Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08-
07] 3,610 sequences; 36,184,363 total letters
Query= NC_014649.1
Length=1181549
Score E
Sequences producing significant alignments: (Bits) Value
seq1872 221 9e-52
seq56 105 5e-17
>seq1872
Length=6849
Score = 221 bits (244), Expect = 9e-52
Identities = 899/1401 (64%), Gaps = 17/1401 (1%)
Strand=Plus/Minus
Query 517259 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 517318
|||| ||||| | ||||| |||||||| | ||| || ||||| || || || || ||
Sbjct 6521 GCAGAGACATTCATGATACCGTTGGCATCAATATCGAAGGTGACCTCGATCTGTGGAACA 6462
Query 517319 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 517378
|| | |||||||||| || || | | ||| |||| ||| || || || ||
Sbjct 6461 CCACGAGGAGCAGGTGGAATACCAGTGAGCTCAAACTTTCCGAGAAGGTTGTTGTCCTTT 6402
Query 517379 GTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAA 517438
||| ||| |||||||||||| | ||| || || ||| ||| ||||| || |
Sbjct 6401 GTGCGCGTTCTTTCACCCTCGAAGACTTGAATCAAGACACCAGGTTGGTTATCGGAGAAG 6342
Query 517439 GTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTC 517498
|| | || ||| || || || ||||| || ||||| | | ||| | ||||||
Sbjct 6341 GTAGAGAAGACTTCAGACTTCTTGGTGGGAATGGTGGTGTTGCGGTGAATGAGCTTGGTC 6282
Query 517499 ATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATA 517558
|| ||||| || || || | ||||||||| | || | |||||| | || | ||
Sbjct 6281 ATTTGTCCACCAGCAGTCTCGATACCAAGAGACAATGGCGCGACATCGAGAAGAAGGATC 6222
Query 517559 T--TTTGAAGTTTTTCAT-CAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCA 517615
| || | || || || ||| | |||| ||| ||||| || || | ||||||||
Sbjct 6221 TCGTTGGTAGACTTGGATGAAGTGTCACCAGAAAGGATAGCAGCCTGGACGGCAGCACCG 6162
Query 517616 TATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTT 517675
||||||||||| |||||||| || | | | ||| | | ||||| ||||| | |
Sbjct 6161 TATGCAACAGCCTCATCAGGGTTGATGGACTTGTTTGGCTCCTTACCGTTGAAGTAGTCG 6102
Query 517676 GAAAGAAGTTGTCT---TACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCA 517732
| | || | ||| ||| | || ||||| | || || || || || || || ||
Sbjct 6101 GTGATGAGCT-TCTGGATACGT--GGGATACGGGTGGAACCACCGACCAAGACGATCTCG 6045
Query 517733 TGCAC-CTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAAC-GGGTTCAAGAC 517790
|| || ||| ||||| || | || | || | || || || ||||| |
Sbjct 6044 TGGACTCTG-GATTTGTCGATCTTGGCGTCAGCGAGGACACGGTCGACTGGGTTGGTG-G 5987
Query 517791 CCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTAT 517850
| || || | ||| |||||||| ||||| ||| | ||| | || | |
Sbjct 5986 TAGATCGGAAGAGGTCCTGGCAAAGTTCCTCGAAACGAGCACGAGTGATAGAGGTGTAGA 5927
Query 517851 AATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTG 517910
| || || || ||||| | ||| || | ||| || | || || | || ||||| || |
Sbjct 5926 AGTCGATACCCTCGAAGAGAGAGTCGATTTCGATGGATGTCTGGGCAGAGGAAGAGAGGG 5867
Query 517911 CACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGC-TGATTGATTC 517969
||| ||||||||||| ||||| || | || | || | || || | | || ||
Sbjct 5866 TACGCTTAGCACGTTCGCATGCAGTGCGGAGACGACGAAGAGCACGAGCGTTAGTGCTT- 5808
Query 517970 AAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCA 518029
|||||| | || | || | |||||| || | || | | || ||||| || ||
Sbjct 5807 AAATCTTTCTTGTGCTTGCGCTTGAACTCGTTTACGAAGTGGTTAACGAGACGGTTGTCG 5748
Query 518030 AAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCT 518089
|| || ||||| ||||| | ||| | || | || | | |||| ||| | || ||
Sbjct 5747 AAGTCCTCACCACCCAAGTGAGTGTCACCGGCGGTGGACTTGACTTCGAAGATACCCTCC 5688
Query 518090 TCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTC 518149
|| | || ||| |||| ||||| |||||| ||||| | ||| || || || || ||
Sbjct 5687 TCGATAGTCAAGAGAGAAACATCGAAGGTTCCTCCACCAAGATCGAAGATGAGAACGTTT 5628
Query 518150 ATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTA 518209
|| || || || || | ||| || |||| ||||| || || || || ||
Sbjct 5627 CGCTCACCCTCAACCTTCTTGTCCAAACCGTAAGCAATGGCAGCGGCGGTGGGCTCGTTG 5568
Query 518210 ATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGT 518269
|| || | | |||||| ||||| || || ||||| ||||| |||||||| | |||
Sbjct 5567 ATGATACGGAGAACATTGAGACCGGCGATGAGACCTGCGTCTTTTGTGGCTTGACGTTGG 5508
Query 518270 GAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAA 518329
|| ||| | || ||||| |||||||| | || || | | || | ||| | ||
Sbjct 5507 GAGTCGGTGAAGTATGCTGGAACAGTGACGACAGCGTTGTTGACCGTTCCACCGAGGTAG 5448
Query 518330 GCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATAT 518389
|| || || | |||| || || | ||| || || |||| ||| || | ||
Sbjct 5447 GCCTCAGCAGTCTCCCTCATCTTGACCAAGACCATCGAGGAGATTTCTTCGGGTGTGAAT 5388
Query 518390 TGCTTGGATTCA-TTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAAC 518448
||||| | ||| |||| | ||||||| ||| || ||| | || ||
Sbjct 5387 TGCTTAGCCTCACCCTTGA-ACTCGACTTCAATGACTGGCTTTCCGCCACGGTCGATGAC 5329
Query 518449 TTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAAT 518508
|| ||||| ||| |||||||| | ||| || | |||| || | | ||| ||
Sbjct 5328 CTTGAATGGGAAGTGCTTCATATCAGCTTGGACTTCTGGGTCGGCGAATTTACGACCGAT 5269
Query 518509 TAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGC 518568
| || || ||||| || | || || || || || || || |||| | || || ||
Sbjct 5268 CAGACGCTTAGCATCGAAGACTGTGTTTGTAGGGTTCATGGCGACTTGGTTCTTTGCGGC 5209
Query 518569 ATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACC 518628
|||||| |||||| |||| || ||||| || | ||| | || |||||||| || || ||
Sbjct 5208 ATCTCCGATCAGACGTTCGGTGTCTGTGAAAGCAACGAACGAAGGAGTTGTTCGGTTTCC 5149
Query 518629 TTGATCATTCGCAATAATTTC 518649
||| || || || ||||||||
Sbjct 5148 TTGGTCGTTGGCGATAATTTC 5128
>seq56
Length=28229
Score = 105 bits (116), Expect = 5e-17
Identities = 115/153 (75%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 518154 CTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAA 518213
||||||| | || ||| || || || || |||| || |||||||| ||||| |||| |
Sbjct 6657 CTTTGTCCTCGTCTTTCTCGAGGCCGTAGGCAAGTGCGGCAGCAGTAGGTTCGTTAACCA 6716
Query 518214 TTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAAT 518273
||| | ||| || | ||| || ||| ||||| ||||| || || || | |||||| |
Sbjct 6717 CTCTGAGAACGTTCAAACCGGCGATTTGGCCTGCGTCTTTTGTTGCCTGGCGTTGTGAGT 6776
Query 518274 CGTTAAAATATGCAGGAACAGTAATAACGGCAT 518306
|||| || || ||||||||||||| ||| ||||
Sbjct 6777 CGTTGAAGTAGGCAGGAACAGTAACAACAGCAT 6809
Score = 105 bits (116), Expect = 5e-17
Identities = 115/153 (75%), Gaps = 0/153 (0%)
Strand=Plus/Minus
Query 518154 CTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAA 518213
||||||| | || ||| || || || || |||| || |||||||| ||||| |||| |
Sbjct 21573 CTTTGTCCTCGTCTTTCTCGAGGCCGTAGGCAAGTGCGGCAGCAGTAGGTTCGTTAACCA 21514
Query 518214 TTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAAT 518273
||| | ||| || | ||| || ||| ||||| ||||| || || || | |||||| |
Sbjct 21513 CTCTGAGAACGTTCAAACCGGCGATTTGGCCTGCGTCTTTTGTTGCCTGGCGTTGTGAGT 21454
Query 518274 CGTTAAAATATGCAGGAACAGTAATAACGGCAT 518306
|||| || || ||||||||||||| ||| ||||
Sbjct 21453 CGTTGAAGTAGGCAGGAACAGTAACAACAGCAT 21421
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3780643259908660
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |