Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08- 07] 3,610 sequences; 36,184,363 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq1872 221 9e-52 seq56 105 5e-17 >seq1872 Length=6849 Score = 221 bits (244), Expect = 9e-52 Identities = 899/1401 (64%), Gaps = 17/1401 (1%) Strand=Plus/Minus Query 517259 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 517318 |||| ||||| | ||||| |||||||| | ||| || ||||| || || || || || Sbjct 6521 GCAGAGACATTCATGATACCGTTGGCATCAATATCGAAGGTGACCTCGATCTGTGGAACA 6462 Query 517319 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 517378 || | |||||||||| || || | | ||| |||| ||| || || || || Sbjct 6461 CCACGAGGAGCAGGTGGAATACCAGTGAGCTCAAACTTTCCGAGAAGGTTGTTGTCCTTT 6402 Query 517379 GTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAA 517438 ||| ||| |||||||||||| | ||| || || ||| ||| ||||| || | Sbjct 6401 GTGCGCGTTCTTTCACCCTCGAAGACTTGAATCAAGACACCAGGTTGGTTATCGGAGAAG 6342 Query 517439 GTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTC 517498 || | || ||| || || || ||||| || ||||| | | ||| | |||||| Sbjct 6341 GTAGAGAAGACTTCAGACTTCTTGGTGGGAATGGTGGTGTTGCGGTGAATGAGCTTGGTC 6282 Query 517499 ATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATA 517558 || ||||| || || || | ||||||||| | || | |||||| | || | || Sbjct 6281 ATTTGTCCACCAGCAGTCTCGATACCAAGAGACAATGGCGCGACATCGAGAAGAAGGATC 6222 Query 517559 T--TTTGAAGTTTTTCAT-CAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCA 517615 | || | || || || ||| | |||| ||| ||||| || || | |||||||| Sbjct 6221 TCGTTGGTAGACTTGGATGAAGTGTCACCAGAAAGGATAGCAGCCTGGACGGCAGCACCG 6162 Query 517616 TATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTT 517675 ||||||||||| |||||||| || | | | ||| | | ||||| ||||| | | Sbjct 6161 TATGCAACAGCCTCATCAGGGTTGATGGACTTGTTTGGCTCCTTACCGTTGAAGTAGTCG 6102 Query 517676 GAAAGAAGTTGTCT---TACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCA 517732 | | || | ||| ||| | || ||||| | || || || || || || || || Sbjct 6101 GTGATGAGCT-TCTGGATACGT--GGGATACGGGTGGAACCACCGACCAAGACGATCTCG 6045 Query 517733 TGCAC-CTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAAC-GGGTTCAAGAC 517790 || || ||| ||||| || | || | || | || || || ||||| | Sbjct 6044 TGGACTCTG-GATTTGTCGATCTTGGCGTCAGCGAGGACACGGTCGACTGGGTTGGTG-G 5987 Query 517791 CCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTAT 517850 | || || | ||| |||||||| ||||| ||| | ||| | || | | Sbjct 5986 TAGATCGGAAGAGGTCCTGGCAAAGTTCCTCGAAACGAGCACGAGTGATAGAGGTGTAGA 5927 Query 517851 AATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTG 517910 | || || || ||||| | ||| || | ||| || | || || | || ||||| || | Sbjct 5926 AGTCGATACCCTCGAAGAGAGAGTCGATTTCGATGGATGTCTGGGCAGAGGAAGAGAGGG 5867 Query 517911 CACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGC-TGATTGATTC 517969 ||| ||||||||||| ||||| || | || | || | || || | | || || Sbjct 5866 TACGCTTAGCACGTTCGCATGCAGTGCGGAGACGACGAAGAGCACGAGCGTTAGTGCTT- 5808 Query 517970 AAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCA 518029 |||||| | || | || | |||||| || | || | | || ||||| || || Sbjct 5807 AAATCTTTCTTGTGCTTGCGCTTGAACTCGTTTACGAAGTGGTTAACGAGACGGTTGTCG 5748 Query 518030 AAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCT 518089 || || ||||| ||||| | ||| | || | || | | |||| ||| | || || Sbjct 5747 AAGTCCTCACCACCCAAGTGAGTGTCACCGGCGGTGGACTTGACTTCGAAGATACCCTCC 5688 Query 518090 TCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTC 518149 || | || ||| |||| ||||| |||||| ||||| | ||| || || || || || Sbjct 5687 TCGATAGTCAAGAGAGAAACATCGAAGGTTCCTCCACCAAGATCGAAGATGAGAACGTTT 5628 Query 518150 ATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTA 518209 || || || || || | ||| || |||| ||||| || || || || || Sbjct 5627 CGCTCACCCTCAACCTTCTTGTCCAAACCGTAAGCAATGGCAGCGGCGGTGGGCTCGTTG 5568 Query 518210 ATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGT 518269 || || | | |||||| ||||| || || ||||| ||||| |||||||| | ||| Sbjct 5567 ATGATACGGAGAACATTGAGACCGGCGATGAGACCTGCGTCTTTTGTGGCTTGACGTTGG 5508 Query 518270 GAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAA 518329 || ||| | || ||||| |||||||| | || || | | || | ||| | || Sbjct 5507 GAGTCGGTGAAGTATGCTGGAACAGTGACGACAGCGTTGTTGACCGTTCCACCGAGGTAG 5448 Query 518330 GCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATAT 518389 || || || | |||| || || | ||| || || |||| ||| || | || Sbjct 5447 GCCTCAGCAGTCTCCCTCATCTTGACCAAGACCATCGAGGAGATTTCTTCGGGTGTGAAT 5388 Query 518390 TGCTTGGATTCA-TTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAAC 518448 ||||| | ||| |||| | ||||||| ||| || ||| | || || Sbjct 5387 TGCTTAGCCTCACCCTTGA-ACTCGACTTCAATGACTGGCTTTCCGCCACGGTCGATGAC 5329 Query 518449 TTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAAT 518508 || ||||| ||| |||||||| | ||| || | |||| || | | ||| || Sbjct 5328 CTTGAATGGGAAGTGCTTCATATCAGCTTGGACTTCTGGGTCGGCGAATTTACGACCGAT 5269 Query 518509 TAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGC 518568 | || || ||||| || | || || || || || || || |||| | || || || Sbjct 5268 CAGACGCTTAGCATCGAAGACTGTGTTTGTAGGGTTCATGGCGACTTGGTTCTTTGCGGC 5209 Query 518569 ATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACC 518628 |||||| |||||| |||| || ||||| || | ||| | || |||||||| || || || Sbjct 5208 ATCTCCGATCAGACGTTCGGTGTCTGTGAAAGCAACGAACGAAGGAGTTGTTCGGTTTCC 5149 Query 518629 TTGATCATTCGCAATAATTTC 518649 ||| || || || |||||||| Sbjct 5148 TTGGTCGTTGGCGATAATTTC 5128 >seq56 Length=28229 Score = 105 bits (116), Expect = 5e-17 Identities = 115/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 518154 CTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAA 518213 ||||||| | || ||| || || || || |||| || |||||||| ||||| |||| | Sbjct 6657 CTTTGTCCTCGTCTTTCTCGAGGCCGTAGGCAAGTGCGGCAGCAGTAGGTTCGTTAACCA 6716 Query 518214 TTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAAT 518273 ||| | ||| || | ||| || ||| ||||| ||||| || || || | |||||| | Sbjct 6717 CTCTGAGAACGTTCAAACCGGCGATTTGGCCTGCGTCTTTTGTTGCCTGGCGTTGTGAGT 6776 Query 518274 CGTTAAAATATGCAGGAACAGTAATAACGGCAT 518306 |||| || || ||||||||||||| ||| |||| Sbjct 6777 CGTTGAAGTAGGCAGGAACAGTAACAACAGCAT 6809 Score = 105 bits (116), Expect = 5e-17 Identities = 115/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 518154 CTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAA 518213 ||||||| | || ||| || || || || |||| || |||||||| ||||| |||| | Sbjct 21573 CTTTGTCCTCGTCTTTCTCGAGGCCGTAGGCAAGTGCGGCAGCAGTAGGTTCGTTAACCA 21514 Query 518214 TTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAAT 518273 ||| | ||| || | ||| || ||| ||||| ||||| || || || | |||||| | Sbjct 21513 CTCTGAGAACGTTCAAACCGGCGATTTGGCCTGCGTCTTTTGTTGCCTGGCGTTGTGAGT 21454 Query 518274 CGTTAAAATATGCAGGAACAGTAATAACGGCAT 518306 |||| || || ||||||||||||| ||| |||| Sbjct 21453 CGTTGAAGTAGGCAGGAACAGTAACAACAGCAT 21421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780643259908660