Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08- 07] 3,610 sequences; 36,184,363 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq1872 499 4e-136 seq201 174 2e-38 seq60 114 2e-20 seq101 107 2e-18 >seq1872 Length=6849 Score = 499 bits (552), Expect = 4e-136 Identities = 1067/1587 (67%), Gaps = 23/1587 (1%) Strand=Plus/Minus Query 6569 TCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGAT 6628 ||||| ||| | || ||||| || || || | ||| ||||| || || || || Sbjct 6641 TCATCATCAGCCTTGTACTTCTCAGCCTCAGACAACATGCGCTCAATATCCTCCTTGGAC 6582 Query 6629 AATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCA 6688 || | ||||| ||||| ||||| |||||| | ||| || || | |||| || || Sbjct 6581 AAGCGACCCTTGTCATTGGTAATGACAATCTTGTTGGACTTTCCGGTACCCTTCTCGACA 6522 Query 6689 GCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTA 6748 ||| ||||||| ||||| || ||||||| |||||| | || | || ||||| | Sbjct 6521 GCAGAGACATTCATGATACCGTTGGCATCAATATCGAAGGTGACCTCGATCTGTGGAACA 6462 Query 6749 CCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGT- 6807 || | || || | ||||||||| || | ||||| | || || | |||| ||| | Sbjct 6461 CCACGAGGAGCAGGTGGAATACCAGTGAGCTCAAACTTTCCGAGAAGGTTGTTGTCCTTT 6402 Query 6808 ---CGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTG 6864 ||| ||||| ||||| || |||||| ||| || ||||||| ||||| Sbjct 6401 GTGCGCGTTCTT----TCACCCTCGAAGACTTGAATCAAGACACCAGGTTGGTTATCGGA 6346 Query 6865 TGCCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGG 6924 || ||||||| || ||||| | ||||| || || || | |||| | | Sbjct 6345 GAAGGTAGAGAAGACTTCAGACTTCTTGGTGGGAATGGTGGTGTTGCGGTGAATGAGCTT 6286 Query 6925 GGTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAA 6984 |||||| ||||| ||| |||| |||||||||| || | || || | || | Sbjct 6285 GGTCATTTGTCCACCAGCAGTCTCGATACCAAGAGACAATGGCGCGACATCGAGAAGAAG 6226 Query 6985 CAGGTCTTGAACAGATTCG--TTCCCT-TCACCCGTTAAGATGGCGGCTTGGACCGTCGC 7041 | || | ||| | | | | ||||| | | ||| || || ||||| | || Sbjct 6225 GATCTCGTTGGTAGACTTGGATGAAGTGTCACCAGAAAGGATAGCAGCCTGGACGGCAGC 6166 Query 7042 CCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATA 7101 |||||||| || |||||||| ||||| || | || || | || |||||||| || || Sbjct 6165 ACCGTATGCAACAGCCTCATCAGGGTTGATGGACTTGTTTGGCTCCTTACCGTTGAAGTA 6106 Query 7102 ATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTC 7161 || | | | | || || ||||| || || || ||||||||||| ||||| || Sbjct 6105 GTCGGTGATGAGCTTCTGGATACGTGGGATACGGGTGGAACCACCGACCAAGACGATCTC 6046 Query 7162 ATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCAT--- 7218 | ||| | ||||| |||||||| | ||| || ||||| || | | Sbjct 6045 GTGGACTCTGGATTTGTCGATCTTGGCGTCAGCGAGGACACGGTCGACTGGGTTGGTGGT 5986 Query 7219 ACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATA 7278 | || ||||| | |||| || |||||||| ||||| ||||| || || || || || Sbjct 5985 AGAT---CGGAAGAGGTCCTGGCAAAGTTCCTCGAAACGAGCACGAGTGATAGAGGTGTA 5929 Query 7279 GAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAA 7338 ||| || | || ||| | | || || ||||| |||| ||| || || | ||||| | Sbjct 5928 GAAGTCGATACCCTCGAAGAGAGAGTCGATTTCGATGGATGTCTGGGCAGAGGAAGAGAG 5869 Query 7339 CGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGA 7398 || ||||| || || || || || || || | ||||||||| ||||| | |||| | Sbjct 5868 GGTACGCTTAGCACGTTCGCATGCAGTGCGGAGACGACGAAGAGCACGAGCGTTAGTGCT 5809 Query 7399 AATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATC 7458 | ||||||||| || || || || ||||| | |||||| || ||| | || Sbjct 5808 TAAATCTTTCTTGTGCTTGCGCTTGAACTCGTTTACGAAGTGGTTAACGAGACGGTTGTC 5749 Query 7459 GAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCC 7518 ||| || |||||||||||||| || || || ||||| | |||||||| |||||||| | Sbjct 5748 GAAGTCCTCACCACCCAAGTGAGTGTCACCGGCGGTGGACTTGACTTCGAAGATACCCTC 5689 Query 7519 TTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTT 7578 || || | || | |||||||| || || || ||||| || || || ||||| ||||| Sbjct 5688 CTCGATAGTCAAGAGAGAAACATCGAAGGTTCCTCCACCAAGATCGAAGATGAGAACGTT 5629 Query 7579 CGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATT 7638 || | || ||||| || | |||||| || || || || || || || || || Sbjct 5628 TCGCTCACCCTCAACCTTCTTGTCCAAACCGTAAGCAATGGCAGCGGCGGTGGGCTCGTT 5569 Query 7639 AATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTG 7698 || ||||| ||| || || || || || | || ||||| || ||||| ||||| Sbjct 5568 GATGATACGGAGAACATTGAGACCGGCGATGAGACCTGCGTCTTTTGTGGCTTGACGTTG 5509 Query 7699 CGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATA 7758 || ||| | ||||| || || || || ||||| |||| |||| | |||||| || Sbjct 5508 GGAGTCGGTGAAGTATGCTGGAACAGTGACGACAGCGTTGTTGACCGTTCCACCGAGGTA 5449 Query 7759 CGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAA 7818 | || || | || |||| ||| | |||||||| || || ||||| | | || Sbjct 5448 GGCCTCAGCAGTCTCCCTCATCTTGACCAAGACCATCGAGGAGATTTCTTCGGGTGTGAA 5389 Query 7819 CTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGAT 7878 || || | ||||| || || || |||||||| | || || ||||| ||| | ||| Sbjct 5388 TTGCTTAGCCTCACCCTTGAACTCGACTTCAATGACTGGCTT-TCCGC--CACGGTCGAT 5332 Query 7879 AACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCC 7938 ||||| | | | | |||||||| ||||||| | | |||| | || || | || Sbjct 5331 GACCTTGAATGGGAAGTGCTTCATATCAGCTTGGACTTCTGGGTCGGCGAATTTACGACC 5272 Query 7939 GATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGC 7998 ||| |||||||| ||||| || ||||||||| | ||||||||||| ||||||||| || Sbjct 5271 GATCAGACGCTTAGCATCGAAGACTGTGTTTGTAGGGTTCATGGCGACTTGGTTCTTTGC 5212 Query 7999 CGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCG 8058 || || ||||| |||||||| | || || || || ||| |||| || || ||||| Sbjct 5211 GGCATCTCCGATCAGACGTTC---GGTGTCTGTGAAAGCAACGAACGAAGGAGTTGTTCG 5155 Query 8059 ATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGA 8118 || ||||||||||| || |||||||| | | ||| | | ||| || |||||||| Sbjct 5154 GTTTCCTTGGTCGTTGGCGATAATTTCGATTCTGTCATCACGGAAGATACCCACGCACGA 5095 Query 8119 ATACGTTGTTCCTAAATCAATACCGAT 8145 || || || || ||||| |||||||| Sbjct 5094 GTAGGTAGTACCCAAATCGATACCGAT 5068 >seq201 Length=62902 Score = 174 bits (192), Expect = 2e-38 Identities = 801/1251 (64%), Gaps = 35/1251 (3%) Strand=Plus/Minus Query 6572 TCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGATAAT 6631 || ||||| ||| ||||| || ||||| ||||| ||||| || |||| | | Sbjct 37629 TCCTCATCGGCATATTTTTCGGCCTCTTGAACCATGCGGTCAATTTCCTCTTGAGTAAGA 37570 Query 6632 CTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCAGCA 6691 | |||||||| || || || || || || ||||| || | |||| || |||| Sbjct 37569 CGTCCCTTATCGTTGGTGATAGTGATGGACTCAGATTTTCCGGTACCCTTGTCACCAGCG 37510 Query 6692 CTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACCC 6751 | || ||||| || || || || |||| ||||| || | |||||| || ||| Sbjct 37509 GTAACCTTCAAGATTCCGTTGGCGTCAAGTTCGAAGGAAACTTCAATTTGAGGAACACCA 37450 Query 6752 CTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTCGCC 6811 | ||||| | ||||||||| || || || ||| ||||||| |||| || ||| | Sbjct 37449 CGTGGTGCTGGTGGAATACCAGTCAATTCGAATTTACCAAGGTTGTTGTTGTCTTTCGTC 37390 Query 6812 TTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCCGTT 6871 ||| || ||||||||||||| ||| || | ||||| || || || || Sbjct 37389 AAAGCACGCTCTCCTTCATAGACTTGAATCAGGACTACGGGTTGGTTGTCGGCGGCTGTG 37330 Query 6872 GAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTCATA 6931 ||||||||||| ||| | || || || ||||| || || | | ||||||| Sbjct 37329 GAGAAGATTTGAGATTTGCGGGTAGGGATAACGGTGTTTCTTGGGATCAACTTGGTCATA 37270 Query 6932 ATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCT 6991 | ||| || |||| || | ||||||| || || | || |||| ||| | | ||| Sbjct 37269 ACACCTCCAGTAGTCTCAATACCAAGAGTCAATGGGTTGACATCCATGAGAACGATGTC- 37211 Query 6992 TGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCG 7051 | ||| | | |||| || || | || | | |||| || | || ||| | ||| Sbjct 37210 --ATCAG-TACCTTCC--TCTCCGGACAAAACACCACCTTGAACAGCGGCACCGAAAGCG 37156 Query 7052 ACCGCCTCATCGGGGTTAAT-CGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAA 7110 || |||||||| ||||| || | || | ||| || || || || ||| | Sbjct 37155 ACAGCCTCATCAGGGTTGATACCCTTGCTGGCCTTC-TTGCCTCCGAAGTATTCCTCAAT 37097 Query 7111 CATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTT 7170 | || |||| || || || || || || ||||||||||| ||||| ||| ||| | Sbjct 37096 GAGTTCCTGAACCTTTGGAATACGAGTGGAACCACCGACCAAGACGATGTCA-TCAACCT 37038 Query 7171 CGAT-TTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGA 7229 || | || | || ||| | ||| || || ||| ||||| | | | || || Sbjct 37037 CGTTCTTCTTGACCTTAGCGTCCTTGAGAACTTGTTCAACAGGCTTGAGAGTCTTCTTGA 36978 Query 7230 ACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGC 7289 | | |||||| || ||||| || || | ||||| | | |||| || || Sbjct 36977 AGAGATCCATATTGAGCTCCTCGAACTTGGCTCTGGTAAGAGTCTCAGAGAAGTCGTTGC 36918 Query 7290 CGTCGTATAACGAATCAATTTCAAT---GGTTGT-TTGTGCCGTCGAAGATAACGTTCGC 7345 | | || |||| || |||||||| ||| || || || ||||| || || ||| Sbjct 36917 CATTGTGGAACGCTTCGATTTCAATGCGGGTAGTCTTTTG----GGAAGACAAAGTACGC 36862 Query 7346 TTTGCGCGCTCA----CACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAAT 7401 || || |||| |||| | | || || | | | | | | | || || Sbjct 36861 TTGGCCTTCTCAGCTTCACG-CTTGAGTTTAC--CCATAGTCTTG-AGATCCTTGGTGAT 36806 Query 7402 AT---CTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATC 7458 | | | || | || ||| | |||| | ||||| || || ||| ||| Sbjct 36805 GTCGACGCTGTTCTCCTT--GTTATATTTCTT-GGCGAAGTAGTTAATGACTCTTTGATC 36749 Query 7459 GAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCC 7518 |||||| || || |||||||| || || || ||||| | ||| || || | ||| | Sbjct 36748 GAAATCCTCTCCTCCCAAGTGAGTGTCACCGGCGGTTGAAAGGACCTCGAAAACACCACG 36689 Query 7519 TTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTT 7578 || ||| | | |||||||| || || || ||||| || || | | || | || Sbjct 36688 GTCGATGGAAAGAAGGGAAACATCGAAAGTTCCTCCACCGAGATCGTAGACGATGA--TT 36631 Query 7579 CGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATT 7638 | | || ||| |||| || | |||||| || ||||| || || || |||||||| Sbjct 36630 TG-ACGTTCTCCTTCAGTCTTGTCCAAACCGTAGGCAATAGCTGCGGCGGTGGGTTCATT 36572 Query 7639 AATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTG 7698 | |||||||| | || || |||||||| | ||||| || || ||||||| || Sbjct 36571 GACGATACGAAGGACTTCCAAACCGGCAATAGTACCGGCATCCTTAGTGGCTTGTCTCTG 36512 Query 7699 CGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATA 7758 |||||| |||||||| || || || || || |||| ||||| ||||| || | || Sbjct 36511 GTTATCGTTGAAGTAGGCTGGAACTGTAACAACAGCGTGGGTGACCTTCTTTCCCAAGTA 36452 Query 7759 CGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTC 7809 ||||| |||| ||| ||||||||| ||||| ||| | || |||||||| Sbjct 36451 TGATTCGGCGACATCCTTCATTTTGCCAAGAATCATGGCGGAGATCTCTTC 36401 >seq60 Length=14677 Score = 114 bits (126), Expect = 2e-20 Identities = 339/520 (65%), Gaps = 11/520 (2%) Strand=Plus/Plus Query 105558 TTCAACGCGTTTCATGAACAAATCTGGAATCCACATGGCTGAAAAGAGGTCTCGACACCT 105617 |||||| || |||||||| | ||| |||||||||| ||| | || || || || | Sbjct 9163 TTCAACACGCTTCATGAAGAGATCCGGAATCCACAAGGCATAGAAAAGATCACGGGCGCG 9222 Query 105618 CGCCTCTTCATCACCTTGATTCAAACGAATTTCGAGAAAATCGAGAATATCGGCGTGCCA 105677 | ||||| | || || ||| |||| || || || |||| || ||| |||||||| Sbjct 9223 GACTTCTTCCTTGCCATGGTTCTTTCGAAGGTCCAGGAACTCGAAAACATCTGCGTGCCA 9282 Query 105678 TGGTTCTAAATAGACTGCAATAGACCCTTTACGACGC------CCCGCTTGATTGACATA 105731 || || | ||||||||||| | || | ||||| || |||| | ||| || Sbjct 9283 AGGCTCAAGATAGACTGCAAATGCACC---AGGACGCTTGTTTCCACCTTGGTCGACGTA 9339 Query 105732 TCTTGCGGTTGAGTTATACACTCGTAACATTGGAATAATACCATCGGATGTTCCATTTGT 105791 ||| || || ||| | ||||||| ||| || | || || | ||| | || || || Sbjct 9340 TCTAGCAGTGTTGTTGAAAACTCGTAGCATGGGTACGATGCCGTTGGAGTTACCGTTGGT 9399 Query 105792 TCCACGAATATGTGATTTATTTGCACGTACATCGTGAACGTGTAACCCAATACCCCCAGC 105851 || || | || | | ||||| | ||||| || | |||||||| ||||| Sbjct 9400 ACCGGCGATGTATGCACCAGTGGCACGGATTCTGTGAATGTTGAGACCAATACCTCCAGC 9459 Query 105852 CCACTTACTGATACGCGCACACTCTTTTACTGTATCGTAAATACCGTCGATACTATCTTC 105911 ||| ||| ||||| || | ||||| |||||||| || ||||| || || Sbjct 9460 ATTTTTAGAGATCATAGCACATGTCTTGAGGGTATCATAAATACCATCAATACTGTCCTC 9519 Query 105912 CTTATTCGCAATCAGGAAACACGATGACATTTGTGGTCTGGGTGTACCAGCATTGAACAG 105971 ||| | |||| ||||| || ||||| | || | | ||||||||||| ||| || Sbjct 9520 CTTCATATCAATGAGGAAGCATGATGAAAGCTGAGCTTGTGGTGTACCAGCGGAGAAAAG 9579 Query 105972 AGTTGGTGTTGCATGAATGAACAAACCTTTCGATA-ACGCTTCGTATGTTTCCAGGACGT 106030 || || | || || |||| | || || | | | || ||| || || | | || Sbjct 9580 TGTAGGGGAGGCGTGTGTGAAGTATTTGTTGGACATAAGGTT-GTAGGTCTCAATGGCGC 9638 Query 106031 GATCAATATCGTGTCCATGAATACCAATAGCGACGCGCAT 106070 || ||||||| || |||||||||| || || ||||| Sbjct 9639 TCTCGATATCGTCACCGTGAATACCAACGGCAACACGCAT 9678 >seq101 Length=46449 Score = 107 bits (118), Expect = 2e-18 Identities = 207/304 (68%), Gaps = 11/304 (4%) Strand=Plus/Plus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 ||||||||||| ||| ||||| || || || || ||||| || ||||| || | ||| Sbjct 31393 ATCGAAATCTTGACCTCCCAAATGGGTGTCACCAGCGGTAGCCTTGACGGTGAAAACACC 31452 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 |||| ||||| || | || ||||| || || || ||||| || || |||| || || Sbjct 31453 ACCTTGAATGTGCAAGAGGGAGACATCGAAAGTTCCTCCACCGAGATCGTAAATTAGAAC 31512 Query 7576 GTTCGTATCG-TCGTCTTTGTTCTT------ATCGAGACCGTACGCGATAGCCGCCGCCG 7628 ||| ||| || | | | |||| | | | ||||| || || || || || | Sbjct 31513 GTT----TCGCTCCTTCTCGCTCTTTCCGGCACCTAAGCCGTATGCAATGGCGGCAGCGG 31568 Query 7629 TTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCG 7688 | || || || || ||||| ||| || || |||||||| | |||| || || || | Sbjct 31569 TAGGCTCGTTGATGATACGGAGAACATTGAGACCAGCAATGGCACCCGCGTCCTTGGTAG 31628 Query 7689 CTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCT 7748 | || ||||| ||||| |||||||| || || || | ||| || | | ||| |||| Sbjct 31629 CCTGACGTTGGTTGTCGTTGAAGTAGGCTGGAACGGTGATGACGGCCTTAGAGACCTTCT 31688 Query 7749 TACC 7752 | || Sbjct 31689 TGCC 31692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635104139632400