Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08- 07] 3,610 sequences; 36,184,363 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq60 194 2e-44 seq3070 129 7e-25 >seq60 Length=14677 Score = 194 bits (214), Expect = 2e-44 Identities = 1145/1804 (63%), Gaps = 51/1804 (3%) Strand=Plus/Minus Query 111556 TCAAGACCCTCGAGAAAAGCTACCTCCAAAGACTGGATGGTGTCTTGATGGAAACCCCAC 111615 |||||||||||||| | ||||| | |||| ||||| | ||| |||| Sbjct 9749 TCAAGACCCTCGAGCGATCGTACCTTCTTCGACTCGATGGAAAAGTTGCAGAACGTCCAC 9690 Query 111616 AGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTTTTGG 111675 | | ||| ||||||| || || | ||||| || || || ||||| || | | | Sbjct 9689 AACAAATGATCATGCGTGTTGCCGTTGGTATTCACGGTGACGATATCGAGAGCGCCATTG 9630 Query 111676 AGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTCAACG 111735 |||| ||| || |||||| |||| ||||| | || || || ||| || Sbjct 9629 AGACCTACAACCTTATGTCCAACAAATACTTCACACACGCCTCCCCTACACTTTTCTCCG 9570 Query 111736 CTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGATTCAA 111795 ||||||||||| | | || | || || ||||| |||| | |||||||| | Sbjct 9569 CTGGTACACCACAAGCTCAGCTTTCATCATGCTTCCTCATTGATATGAAGGAGGACAGTA 9510 Query 111796 TCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGTGGTA 111855 | |||| ||||| | || |||| |||||| ||||| || ||||| |||| Sbjct 9509 TTGATGGTATTTATGATACCCTCAAGACATGTGCTATGATCTCTAAAAATGCTGGAGGTA 9450 Query 111856 TCGGGATGCACATCCATGATGTCAGAGCCAACAAGT-CTCGTATTAGAGGTACAAATGGT 111914 | || | |||| || || | |||| | || | || ||||| || ||| Sbjct 9449 TTGGTCTCAACATTCACAGAATCCGTGCCA-CTGGTGCATACATCGCCGGTACCAACGGT 9391 Query 111915 CAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAAC 111974 | || | || || | || ||||| || || || ||| ||| || | || || || Sbjct 9390 AACTCCAACGGCATCGTACCCATGCTACGAGTTTTCAACAACACTGCTAGATACGTCGAC 9331 Query 111975 CAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCG 112028 |||| ||| ||||| | || | ||||||||||||||||| |||||||| Sbjct 9330 CAAGGTGGAAACAAGCGTCCTGGTGCATTT---GCAGTCTATCTTGAGCCTTGGCACGCA 9274 Query 112029 GATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGCCGC 112088 ||| | | |||||||| || | || ||||| || | || || | || ||| Sbjct 9273 GATGTTTTCGAGTTCCTGGACCTTCGAAAGAACCATGGCAAGGAAGAAGTCCGCGCCCGT 9214 Query 112089 GATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGC 112148 ||||| |||| || | |||||||| ||||||||||||||| | ||||| ||| | Sbjct 9213 GATCTTTTCTATGCCTTGTGGATTCCGGATCTCTTCATGAAGCGTGTTGAAAAGAACGCG 9154 Query 112149 AATTGGTCTCTCTTTTGTCCAGACAAGGCA---CCCGGTCTCTCCGATGCCGTGGGTGAG 112205 ||||| | || | || || ||| | | || || | | |||| || || Sbjct 9153 GATTGGACACTAATGTGCCC---CAATGAATGTCCTGGGTTGGCTGATGTATATGGCGAC 9097 Query 112206 GAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGC--GACGGTGC 112263 ||||||||||| ||||| | || ||| | ||| || | | | | || ||| | Sbjct 9096 GAGTTTGAAGCTCTCTATGAGAGTTATGAGAAGGAAGGTAGAG-GTC-GCAAGACCATCA 9039 Query 112264 CAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATATA 112323 ||| | | ||| | | |||||| || ||||||||||||| || | |||| | Sbjct 9038 AAGCCCAAAAGCTTTGGTACTCCATTCTCGAGGCTCAAACCGAGACCGGAAATCCATTCA 8979 Query 112324 TGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGA 112383 |||||||||| || || || ||| | ||||| || |||||||| | || || | Sbjct 8978 TGCTTTACAAGGATGCATGCAACAAGAAGAGCAACCAAAAGAACCTCGGCACCATTCGCA 8919 Query 112384 GTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTA 112443 | ||||| | || |||||||| | |||| | | | |||||| ||| |||| Sbjct 8918 GCTCCAATTTGTGCACAGAAATTGTCGAATACTCTGCCCCAGATGAAGTCGCTTGCTGTA 8859 Query 112444 ACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAG-ACATTTGATTAT 112502 || | || || || |||||||| | | |||||| | || | | || | |||| Sbjct 8858 ACTTGGCTTCCATTGCTCTCCCAACATTTGTGGA-CATGAATGAGGGAACTTACGATTTC 8800 Query 112503 GAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATAGA 112562 |||| || ||||| ||||| || || | |||| | |||| | ||||| | Sbjct 8799 CAAAAGCTTCACGAGGTTACTCAAGTCGTTGTCAGAAACTTGAACAAGATCATTGACATC 8740 Query 112563 AATTTTTACCCCGT-TGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCT 112621 || | |||||||| ||| || | || ||| | | || || || || | | | Sbjct 8739 AACTACTACCCCGTCCCAGA-GGCCAGAAAGAGCAATTTCCGTCATCGACCTATCGCTGT 8681 Query 112622 CGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACGA 112681 |||||| |||||||| || |||| ||| | | ||| ||||||| || || Sbjct 8680 CGGTGTTCAAGGTCTTGCCGATGCTTTCTTGGCTCTTCGATTACCATTTGAATCACCTGA 8621 Query 112682 AGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGAGGCGAG 112741 ||| ||| | |||| | || || || || || || ||||| ||| |||| | Sbjct 8620 AGCCAAGCACCTCAACATTCAAATCTTCGAAACTATTTACCACGCTGCT-TTGA-CATCG 8563 Query 112742 TTCG--GAGTTGGC--AGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTT 112797 | || ||| | || || |||| ||| | ||||| || | || || || || | | Sbjct 8562 TCCGTTGAGATTGCTAAGGAGTTG--GGTACCTATGAGACTTACGAAGGCTCACCTGTCT 8505 Query 112798 CACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGC-TTCACTACGACTGG 112856 | | || | ||||||| |||||||||| | || | ||| | | | | |||||| Sbjct 8504 CGAAGGGCGAACTTCAATACGATATGTGGGGA-GTTACACCTACCGACCTTTGGGACTGG 8446 Query 112857 GA-CGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACC 112915 || ||| | ||| || |||||| | | ||| | || |||||| | | | || || Sbjct 8445 GATAGCT-TGAAGAAATCCATCAAACAACACGGTGTCCGCAACAGTTTGCTCGTTGCTCC 8387 Query 112916 AATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACAC 112975 |||||||||||| |||| | ||||| | ||| || || ||||||||||| ||||| Sbjct 8386 TATGCCAACAGCCAGCACCTCTCAAATTCTCGGTTTCAACGAGTGCTTTGAACCATACAC 8327 Query 112976 GACGAACATCTA-TCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCAT- 113033 | |||||||| ||| | | | | || ||||| || |||| ||| ||| Sbjct 8326 TTCTAACATCTACTCT-CGTCGTGTCTTGGCTGGAGAATTCCAAGTTGTTAAC--CCATG 8270 Query 113034 -CTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCATGGT 113092 || | | || || || || || | ||||| | | |||||| | | ||| | Sbjct 8269 GCTGCTCAAGGATCTTGTCGACATGGGATTATGGTCAGACAACATGAAGAACCGCATCAT 8210 Query 113093 GAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAGATGAAATTAAGAAGTTGTA 113152 | |||||||| |||||||| ||| | ||||||| ||| || ||| | || Sbjct 8209 CGCTGACGGTGGTTCTATTCAAAACATTCCCAACATTCCAGCTGACATCAAGGCACTTTA 8150 Query 113153 CCGCACAGTTTGGGAAA--TCAAGATGAAGGATGTCATTGACATGGCCGCAGATCGTGGT 113210 | || || ||||| | || | ||| | | || | |||||||| ||||||||| Sbjct 8149 CAAGACCGTCTGGGAGATTTCTCAACGAACAA--TTGTTCAAATGGCCGCTGATCGTGGT 8092 Query 113211 CGCTTCATTGATCAAAGTCAAAGT--ATGAATCTATTCATGGAAAGTCCAACGATGTCCA 113268 ||| |||| | ||||| | | ||||| | |||| || || || ||| || Sbjct 8091 GCCTTTGTTGACC--AGTCACAATCAATGAACATTCACATGAAAGACCCCACAATGGGCA 8034 Query 113269 AGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTATTACC 113328 || | |||| ||||| | | ||||||| ||||||||| || || ||||| |||| Sbjct 8033 AGATTACTTCCATGCATTTCGCCGGTTGGAAATTGGGTCTCAAGACCGGAATGTACTACC 7974 Query 113329 TCCG 113332 |||| Sbjct 7973 TCCG 7970 >seq3070 Length=35956 Score = 129 bits (142), Expect = 7e-25 Identities = 158/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 102108 ACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGTC 102166 |||||||| || ||| | |||||||| || |||||| | | ||| || | ||||| | Sbjct 29037 ACAGTTCCTTGCATTAAGAAGAAAGCCGACTGGGCTGTCAGATGGATTCAAGACAAAAAC 28978 Query 102167 GCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGG 102226 | | |||||||| |||| || | || ||||| ||||||||| ||||||||| ||| Sbjct 28977 TC-TACCTTTGCTCAGCGTCTGGTTGCTTTTGCTGCTGTTGAGGGCATCTTCTTCAGTGG 28919 Query 102227 TTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTC 102286 || ||| |||| | |||||||||||||| || | ||| | |||||| ||||| Sbjct 28918 ATCATTCGCTTCTATCTTCTGGCTCAAGAAGCGTGGCTTGATGGCTGGTCTCACTTTCTC 28859 Query 102287 CAACGAGCTTATCTCTCGTGACGAGGGACTCCA 102319 ||| ||||| ||||| ||||| || || ||||| Sbjct 28858 CAATGAGCTCATCTCCCGTGATGAAGGTCTCCA 28826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620714388999200