Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08- 07] 3,610 sequences; 36,184,363 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq60 181 1e-40 seq3070 114 2e-20 >seq60 Length=14677 Score = 181 bits (200), Expect = 1e-40 Identities = 1162/1840 (63%), Gaps = 55/1840 (3%) Strand=Plus/Plus Query 109408 CGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAG 109467 || || || ||||| || || |||||||| ||||| || | |||||| |||| Sbjct 7970 CGGAGGTAGTACATTCCGGTCTTGAGACCCAATTTCCAACCGGCGAAATGCATGGAAGTA 8029 Query 109468 AGTTTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAAT 109527 | ||| | ||| || | ||| | |||||| || || ||||| || | || Sbjct 8030 ATCTTGCCCATTGTGGGGTCTTTCATGTGAATGTTCATTGATTGTGACTGGTCAACAAAG 8089 Query 109528 CGACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGACAGTCTTG 109587 |||||||||||| ||||| | | || ||| ||| |||||||| |||||| Sbjct 8090 GCACCACGATCAGCGGCCATTTGAACAATTGTTCGTTGAGAAATCTCCCAGACGGTCTTG 8149 Query 109588 TACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACCAGCCTTC 109647 || | |||||| ||| | ||||||| |||||||||||||| ||||| | Sbjct 8150 TAAAGTGCCTTGATGTCAGCTGGAATGTTGGGAATGTTTTGAATAGAACCACCGTCAGCG 8209 Query 109648 ACCATGAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGTCAACAAG- 109706 | ||| | | |||||| | | ||||| | || | | ||||| | | || Sbjct 8210 ATGATGCGGTTCTTCATGTTGTCTGACCATAATCCCATGTCGACAAGATCCTTGAGCAGC 8269 Query 109707 -ATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCG 109765 ||| ||| || || ||||| ||||| | || || ||||||||||| | Sbjct 8270 CATGG--GTTAACAACTTGGAATTCTCCAGCCAAGACACGACGAGAGTAGATGTTAGAAG 8327 Query 109766 TGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGG 109825 |||| ||||| || ||||| ||| || || ||||| | ||| ||||| ||||| | Sbjct 8328 TGTATGGTTCAAAGCACTCGTTGAAACCGAGAATTTGAGAGGTGCTGGCTGTTGGCATAG 8387 Query 109826 GAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTCACGCATTGCG-TCC 109884 |||| | ||| | |||||| |||| ||| | | ||| | | | || ||| Sbjct 8388 GAGCAACGAGCAAACTGTTGCGGACACCGTGT-TGTTTGATGGATTTCTTCAAGCTATCC 8446 Query 109885 CAATCATAACGACCACTAAATTTAGTCTCACCATCCCACATATCTGGTTGAAGTACACCC 109944 || || || | | || | || ||| |||||||||| ||||||| | ||| Sbjct 8447 CAGTCCCAAAGGTCGGTAGGTGTAA-CTC-----CCCACATATCGTATTGAAGTTCGCCC 8500 Query 109945 TCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCAACTC---G 110001 | | |||| || || | | || |||| || | ||| ||| || | ||| | Sbjct 8501 TTCGAGACAGGTGAGCCTTCGTAAGTCTCATAGGTACCCAACTCCTTAGCAATCTCAACG 8560 Query 110002 GATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAGCATTCATGAGGCGA 110061 || || | | | || || || || ||||| || || || ||| || |||| | Sbjct 8561 GACGATGTC---AAAGCAGCGTGGTAAATAGTTTCGAAGATTTGAATGTT---GAGGTGC 8614 Query 110062 GACTCTTCAC---AGTCGAAGGGAAGACCACAAAG--AATAAACACATCCGCTAGACCCT 110116 ||||| | || || || | | | | || || ||| |||| || ||||| | Sbjct 8615 TTGGCTTCAGGTGATTCAAATGGTAATCGA-AGAGCCAAGAAAG-CATCGGCAAGACCTT 8672 Query 110117 GAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTACGGGGT 110176 ||||||||| | | || || ||||| | || || || | ||||||| Sbjct 8673 GAACACCGACAGCGATAGGTCGATGACGGAAATTGCTCTTTCTGGCCTCTGGGACGGGGT 8732 Query 110177 AAAAGTTGCGGTCGATGACCCGATTGA-GATTCTTCGTCACAGTCTTC-GTGATTTCATG 110234 | ||||| ||| |||| | || | | |||| | || | ||| || | || || Sbjct 8733 AGTAGTTGATGTCAATGATCTTGTTCAAGTTTCT--GACAACGACTTGAGTAACCTCGTG 8790 Query 110235 GAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTGACATATTTGGGGAGAGCAATAGA 110294 || || | | ||||| | ||| | | | | | ||| || | ||||||||||| || Sbjct 8791 AAGCTTTTGGAAATCGTAAGTTCCCTCATTCATGTCCACAAATGTTGGGAGAGCAATGGA 8850 Query 110295 CGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCCGTACACAA 110354 || | || || || || ||| | | | |||||| | |||||| || ||||| Sbjct 8851 AGCCAAGTTACAGCAAGCGACTTCATCTGGGGCAGAGTATTCGACAATTTCTGTGCACAA 8910 Query 110355 GTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCATCCTT 110414 ||||| || |||| || | |||||| || || || ||||||||||||||| Sbjct 8911 ATTGGAGCTGCGAATGGTGCCGAGGTTCTTTTGGTTGCTCTTCTTGTTGCATGCATCCTT 8970 Query 110415 ATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATACATC 110474 || |||||| |||| | || || || || || | || |||||||| | ||| | | Sbjct 8971 GTAAAGCATGAATGGATTTCCGGTCTCGGTTTGAGCCTCGAGAATGGAGTACCAAAGCTT 9030 Query 110475 GGCGGCGGGGACAGT--TGCGTTAGCGAGACCTTCCTCCTCGTACTTGGTGTACAAGTCC 110532 ||| || || |||| | | |||||||| ||| || | || | | Sbjct 9031 TTGGGCTTTGATGGTCTTGCG--ACCTCTACCTTCCTTCTCATAACTCTCATAGAGAGCT 9088 Query 110533 TCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTG-TCGGGACAGAAGAGGGA 110591 ||||| || | || || ||||||| | |||| | || | ||| || | || | Sbjct 9089 TCAAACTCGTCGCCATATACATCAGCCA-ACCCAGGACATTCATTGGGGCACATTAGTGT 9147 Query 110592 CCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAA 110651 ||||| | || ||||| | ||||||||| || || |||||||||| || |||| Sbjct 9148 CCAATCCGCGTTCTTTTCAACACGCTTCATGAAGAGATCCGGAATCCACAAGGCATAGAA 9207 Query 110652 AAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCAT 110711 ||| |||||| || | ||||| | || ||||| || || |||| || || | Sbjct 9208 AAGATCACGGGCGCGGACTTCTTCCTTGCCATGGTTCTTTCGAAGGTCCAGGAACTCGAA 9267 Query 110712 GATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACGACGAC-----CC 110766 | ||| | |||||| || || |||||||| || | | || | |||| || Sbjct 9268 AACATCTGCGTGCCAAGGCTCAAGATAGACTGCAAATGCACC---AGGACGCTTGTTTCC 9324 Query 110767 GCCT-GGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATC 110825 ||| ||| || || | || ||| ||||| || | ||||| || | || || | Sbjct 9325 ACCTTGGTCGACGTATCTAGCAGTGTTGTTGAAAACTCGTAGCATGGGTACGATGCCGTT 9384 Query 110826 GGATTGACCATTTGTACCCCTAAT-TCTGGACTTATTGGCACGAATGTCGTGGATATGCA 110884 ||| | ||| || ||||| || | || || | ||||||| || ||| || | | Sbjct 9385 GGAGTTACCGTTGGTACCGGCGATGTATGCACC-AGTGGCACGGATTCTGTGAATGTTGA 9443 Query 110885 TACCAATACCACCCGCCCACTTACTAATTTGTGCACAC-TCTGTGAGTGTACCATAAATA 110943 ||||||||| || || ||| || ||||| ||| |||| ||| |||||||| Sbjct 9444 GACCAATACCTCCAGCATTTTTAGAGATCATAGCACATGTCT-TGAGGGTATCATAAATA 9502 Query 110944 CCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGC 111003 |||||||| || |||| | |||| || ||||| || || | ||||| | || Sbjct 9503 CCATCAATACTGTCCTCCTTCATATCAATGAGGAAGCATGATGAAAGCTGAGCTTGTGGT 9562 Query 111004 GTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTG--GGACATCTTGT 111061 || || || ||| |||||||| | || || |||| | ||| |||||| || Sbjct 9563 GTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGTGTGAA--GTATTTGTTGGACATAAGGT 9620 Query 111062 TGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAATACCAATGGCAACTCGCATGA 111121 |||| || || | ||| | ||| | |||||||||||||| |||||| ||||||| Sbjct 9621 TGTAGGTCTCAATGGCGCTCTCGATATCGTCACCGTGAATACCAACGGCAACACGCATGA 9680 Query 111122 ACATATATTGAGGCGTTTCGATTAGCTTTCCATCAACACGCTGAAGGTAACTCTTCTCTA 111181 ||| | ||| || ||| | |||||||| | || ||||||| ||| | Sbjct 9681 TCATTTGTTGTGGACGTTCTGCAACTTTTCCATCGAGTCGAAGAAGGTACGATCGCTCGA 9740 Query 111182 GGGTCTTGAGACCAAAGTATCCAAAATCGAAATCACGATC 111221 ||||||||| || |||||| ||| ||| || ||||| Sbjct 9741 GGGTCTTGAATCCGAAGTATTGGTAATTGAAGTCTCGATC 9780 >seq3070 Length=35956 Score = 114 bits (126), Expect = 2e-20 Identities = 349/522 (67%), Gaps = 23/522 (4%) Strand=Plus/Plus Query 119208 TAGTCACCCACCCTCTTTTCGAAGAAATTCGTCTTACCATCGAGTGAGATGTTTTCCATA 119267 |||||||| || ||||| |||||||| || ||||| || | || |||||||| ||||| Sbjct 28526 TAGTCACCAACTCTCTTCTCGAAGAAGTTTGTCTTGCCTGCTAGGGAGATGTTCTCCATG 28585 Query 119268 AAGTCAAAAGGATTTTTGGAGTTCCAGAT-TGGTGGTTGACCAACTTGTTTCAGAAGACG 119326 ||||| || || || || || | | | | ||| ||||| || ||||| Sbjct 28586 AAGTCGAATGGGTTGGCAGACTTGTACACCTTCTCGTT-ACCAAGAGCAACTAGGAGACG 28644 Query 119327 ATCGGAGACATACTCGATATATTCGGACATCTTTTCCGAATTCATACCTATGAGATTACA 119386 ||||| ||| ||||||| |||| |||| | || ||||| || | || ||| Sbjct 28645 ATCGGCGACGAACTCGATGTATTGCTTCATCAAGTTCGCGTTCATGCCAAGAAGTGCACA 28704 Query 119387 CGGGAGAGCATCGAGGATGAAGTTCTTCT-CGATCTCCACAGCTTCTTTCACGA-----T 119440 || ||||| ||| | ||| ||||| | ||||||| ||||| ||| | | || | Sbjct 28705 AGGAAGAGCCTCGGTCAAGAA-TTCTTGTTCGATCTCGACAGCCTCTGTGATGACATCTT 28763 Query 119441 GGAGTGAATAGTTTCTGTCGATGGTTTGTTTCTCAAGAGTTTAAACA--ACTCTACGGCA 119498 ||| | | || || | || ||| | ||| ||| | || | | | ||| | Sbjct 28764 GGACAGCCTGCTTGCT-TGGACGGT--GCTTC--AAGTGGGAGAAGAGGAGGC-ACG-CG 28816 Query 119499 AATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGC 119558 || || ||| || |||||||| || |||||||||||||| ||| || |||| | Sbjct 28817 AAGTCGGTATGGAGACCTTCATCACGGGAGATGAGCTCATTGGAGAAAGTGAGACCAGCC 28876 Query 119559 ATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCC 119618 || | || | ||||| ||||| ||||| | | || |||| |||||||||||| Sbjct 28877 ATCAAGCCACGCTTCTTGAGCCAGAAGATAGAAGCGAATGATCCACTGAAGAAGATGCCC 28936 Query 119619 TCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAG-ACTTGTC--GAA-CCA 119674 || ||| || ||||| | ||||||| ||| |||||| ||| ||||| ||| ||| Sbjct 28937 TCAACAGCAGCAAAAGCAACCAGACGCTGAGC-AAAGGTAGAGTTTTTGTCTTGAATCCA 28995 Query 119675 CTTGAGAGCCCAGTTGGCCTTACGCTCTATGCAGGGGACAGT 119716 ||| |||||||| ||| || || ||||| || || || Sbjct 28996 TCTGACAGCCCAGTCGGCTTTCTTCTTAATGCAAGGAACTGT 29037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588949422458000