Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08- 07] 3,610 sequences; 36,184,363 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq60 260 2e-64 >seq60 Length=14677 Score = 260 bits (288), Expect = 2e-64 Identities = 1165/1815 (64%), Gaps = 53/1815 (3%) Strand=Plus/Plus Query 105590 CGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCACGCGTACATATGCATAGAAGAG 105649 ||||| |||||||| ||||||||||| || |||||| || | |||||| |||| Sbjct 7970 CGGAGGTAGTACATTCCGGTCTTGAGACCCAATTTCCAACCGGCGAAATGCATGGAAGTA 8029 Query 105650 AGCTTGGACATCGTTGGACTTTCCATGAAAAGATTCATACTTTGACTCTGGTCAATGAAG 105709 | |||| ||| || || || |||| || ||||| ||| |||||||| ||| Sbjct 8030 ATCTTGCCCATTGTGGGGTCTTTCATGTGAATGTTCATTGATTGTGACTGGTCAACAAAG 8089 Query 105710 CGACCACGTTGTGCCGCCATATCAATGACATCCTTCATCTTGA--TTTCCCACACTGTGC 105767 |||||| | || ||||| | || | | ||| | || | ||||| || || Sbjct 8090 GCACCACGATCAGCGGCCATTTGAACAA--TTGTTCGTTGAGAAATCTCCCAGACGGTCT 8147 Query 105768 GGTAGAGATTCTTGATATCATCTGGGATATCTGAGATATTTTGAATTGAACCCCCCGCCT 105827 ||| || |||||| ||| |||| || | | || |||||||| ||||| || | Sbjct 8148 TGTAAAGTGCCTTGATGTCAGCTGGAATGTTGGGAATGTTTTGAATAGAACCACCGTCAG 8207 Query 105828 TGACCATGAGATCCTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACGA 105887 || ||| | | |||||| | | ||||| | || || | ||||| |||| | Sbjct 8208 CGATGATGCGGTTCTTCATGTTGTCTGACCATAATCCCATGTCGACAAGATCCTTGAGCA 8267 Query 105888 G--ATGCTTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGA-TAGATGTTCG 105944 | ||| ||| |||| || ||||| || | | | | ||| |||||||| | Sbjct 8268 GCCATGG--GTTAACAACTTGGAATTCTCCAGCCAAGACACGACG-AGAGTAGATGTTAG 8324 Query 105945 TCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCA 106004 ||||| ||||||||||| || || ||| | ||||| | |||| ||||||||||| Sbjct 8325 AAGTGTATGGTTCAAAGCACTCGTTGAAACCGAGAATTTGAGAGGTGCTGGCTGTTGGCA 8384 Query 106005 TTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACAT 106064 | || || | | | |||||| || | ||| | || |||||| || ||| | || Sbjct 8385 TAGGAGCAACGAGCAAACTGTTGCGGACACCGTGTTGTTTGATGGATTTCTTCAAGCTAT 8444 Query 106065 CCCAGTCGTAGTTGA-GCTTGGTTTCACCTTCCCACATATCAAATTGAAGCAC-CCCTTG 106122 ||||||| | | | | ||| | || | |||||||||| ||||||| | ||||| Sbjct 8445 CCCAGTCCCAAAGGTCGGTAGGTGTAAC-TCCCCACATATCGTATTGAAGTTCGCCCTTC 8503 Query 106123 G-GACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCACAGC 106181 | ||| | ||| || || | |||||||||| ||| | | ||| | ||| | Sbjct 8504 GAGACAGGTGAG--CCTTCGTAAGTCTCATAGGTACCCAACTCCTTAGCAATCTCAACGG 8561 Query 106182 TCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTT 106241 || || | ||||| || || ||||| ||||| || || | | |||||||| Sbjct 8562 ACGATGTCAAAGCAGCGTGGTAAATAGTTTCGAAGATTTGAATGTTGAGGTGCTTGGCTT 8621 Query 106242 CATCTGAATCAAATGCGTAGCGGCACAA--AATAAATACATCCGCGAGACCTTGAACACC 106299 || ||| ||||||| ||| | | | || ||| |||| || |||||||||||||| Sbjct 8622 CAGGTGATTCAAATG-GTAATCGAAGAGCCAAGAAAG-CATCGGCAAGACCTTGAACACC 8679 Query 106300 CAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA-ACGGGATAAAAAT 106358 | | | ||||||| || || | ||| ||||| || ||| ||||| || | | Sbjct 8680 GACAGCGATAGGTCGATGACGGAAATTGCTCTTTCTGGCC-TCTGGGACGGGGTAGTAGT 8738 Query 106359 TTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTT 106418 | ||||||||| ||| | ||| || ||| | | || | || ||||| |||| Sbjct 8739 TGATGTCAATGATCTTGTTCAAGTTTCTGACAACGACTTGAGTAACCTCGTGAAGCTTTT 8798 Query 106419 CATAATCAAAAGTGCGAGTCTC-TTCATTG--ACATACTTTGGAAGGGCGATTGATGCCA 106475 |||| |||| | ||| ||||| ||| | |||| || || || || |||| Sbjct 8799 GGAAATCGTAAGTTCC---CTCATTCATGTCCACAAATGTTGGGAGAGCAATGGAAGCCA 8855 Query 106476 AATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGG 106535 | || || ||| ||||| | | ||| || | ||||||||| ||||| |||| Sbjct 8856 AGTTACAGCAAGCGACTTCATCTGGGGCAGAGTATTCGACAATTTCTGTGCACAAATTGG 8915 Query 106536 AACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGA 106595 | || ||| || || | ||||||||||| ||||| |||||||| ||||||||||| | Sbjct 8916 AGCTGCGAATGGTGCCGAGGTTCTTTTGGTTGCTCTTCTTGTTGCATGCATCCTTGTAAA 8975 Query 106596 GCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACACATCGGCGG 106655 ||||| | || | || ||||| || || | || |||||| | | ||| | | || Sbjct 8976 GCATGAATGGATTTCCGGTCTCGGTTTGAGCCTCGAGAATGGAGTACCAAAGCTTTTGGG 9035 Query 106656 CTGGTACAATGGCGTTG---GCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAA 106712 | | |||| ||| | | || ||| ||| || | ||||| ||||||| Sbjct 9036 C---TTTGATGGTCTTGCGACCTCTACCTTCCTTCTCATAACTCTCATAGAGAGCTTCAA 9092 Query 106713 ACTCCTCACCCACCGCGTCGGAGAGACCTGG---TGCCTTGTCTGGACAGAAAAGAGACC 106769 |||| || || | || | | || || | | ||| || || | || | || Sbjct 9093 ACTCGTCGCCATATACATCAGCCAACCCAGGACATTCATTG---GGGCACATTAGTGTCC 9149 Query 106770 ATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGA 106829 | | | || ||||| ||||||||||| || || |||||||||| || | || | Sbjct 9150 AATCCGCGTTCTTTTCAACACGCTTCATGAAGAGATCCGGAATCCACAAGGCATAGAAAA 9209 Query 106830 GATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGA 106889 |||| | || | ||||| | || ||||| ||| | || |||||||| | | Sbjct 9210 GATCACGGGCGCGGACTTCTTCCTTGCCATGGTTCTTTCGAAGGTCCAGGAACTCGAAAA 9269 Query 106890 TATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------CCAG 106943 ||| |||||||| ||||||||||||||||| | || | ||||| ||| Sbjct 9270 CATCTGCGTGCCAAGGCTCAAGATAGACTGC---AAATGCACCAGGACGCTTGTTTCCAC 9326 Query 106944 CTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTG 107003 |||| | || || | || ||| ||| || || || ||||| || | || || | | Sbjct 9327 CTTGGTCGACGTATCTAGCAGTGTTGTTGAAAACTCGTAGCATGGGTACGATGCCGTTGG 9386 Query 107004 ATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCC 107063 | | ||| || || || || | | |||| | | || |||| | | Sbjct 9387 AGTTACCGTTGGTACCGGCGATGTATGCACCAGTGGCACGGATTCTGTGAATGTTGAGAC 9446 Query 107064 CAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGT 107123 ||||||| ||||| || ||||| ||||| | | || || |||| ||||| | Sbjct 9447 CAATACCTCCAGCATTTTTAGAGATCATAGCACATGTCTTGAGGGTATCATAAATACCAT 9506 Query 107124 TGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTAC 107183 || ||||||||| | | || |||||||| || | ||| | | |||||||| Sbjct 9507 CAATACTGTCCTCCTTCATATCAATGAGGAAGCATGATGAAAGCTGAGCTTGTGGTGTAC 9566 Query 107184 CAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCGTAT 107242 |||| ||| || || || | ||||| |||| || | | |||||| || ||| Sbjct 9567 CAGCGGAGAAAAGTGTAGGGGAGGCGTGTGTGAA-GTATTTGTTGGACATAAGGTTGTAG 9625 Query 107243 GTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATG 107302 ||||| | | | || || || || ||||| || || | ||| |||||||| | ||| Sbjct 9626 GTCTCAATGGCGCTCTCGATATCGTCACCGTGAATACCAACGGCAACACGCATGATCATT 9685 Query 107303 TATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATA-GCTCTTCTCAAGGGT 107361 | ||| || ||| | | |||||||| || |||| || | || ||| ||||| Sbjct 9686 TGTTGTGGACGTTCTGCAACTTTTCCATCGAGTCGAAGAAGGTACGATC-GCTCGAGGGT 9744 Query 107362 TTTGAGACCAAAGTA 107376 |||| || ||||| Sbjct 9745 CTTGAATCCGAAGTA 9759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589954177116400