Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08-
07] 3,610 sequences; 36,184,363 total letters
Query= NC_015280.1
Length=181044
Score E
Sequences producing significant alignments: (Bits) Value
seq2554 176 5e-39
seq2558 95.1 1e-14
>seq2554
Length=2250
Score = 176 bits (194), Expect = 5e-39
Identities = 217/295 (74%), Gaps = 4/295 (1%)
Strand=Plus/Minus
Query 153747 GATATTGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCAT 153806
||||||||| | || | | ||| | |||||| | || | |||||||||||||| |||
Sbjct 1095 GATATTGCTTTTGGAAATGCTCAACGTTTTGGTGTACCCTTCGGATATGGAGGTCCCCAT 1036
Query 153807 GCTGCATTCTTTGCAACAACAGACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGGT 153866
||||| |||||||| | || ||||| ||| ||||||| || || | | | |||
Sbjct 1035 GCTGCTTTCTTTGCTGTTAGCGAAAAGTACAAGCGAAAGATTCCCGGACGTCTCATTGGT 976
Query 153867 CAGTC--AGTAGATAGTGAAGGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGC 153924
||| || | | | || || ||||||| ||||| ||||||||||||||||| |
Sbjct 975 GTGTCGAAGGACAGATTG--GGCGATAAAGCTATGAGATTGGCACTACAGACTAGAGAAC 918
Query 153925 AGCATATCAGGAGAGACAAAGCAACCAGTAACATCTGCACAGCTCAGGCACTGCTGGCTA 153984
|||||||||| || || || || || ||||| ||||||||||||| ||| |||||||||
Sbjct 917 AGCATATCAGAAGGGAGAAGGCTACTAGTAATGTCTGCACAGCTCAAGCATTGCTGGCTA 858
Query 153985 ATATGTCTGGATTCTATGCAGCATATCATGGTGCAGATGGACTACATGCTATAGC 154039
||||| | ||||||||| | || |||||| | | ||||| | ||||| ||
Sbjct 857 ATATGAGCGCATTCTATGCTGTCTACCATGGTCCTCAAGGACTCAAGGCTATTGC 803
>seq2558
Length=598
Score = 95.1 bits (104), Expect = 1e-14
Identities = 127/177 (72%), Gaps = 0/177 (0%)
Strand=Plus/Minus
Query 154929 TGTAAGATCGTTCATGACAATGGTGGTCAGGTATATCTTGATGGAGCAAATCTAAATGCA 154988
||| | || |||||| | | || ||||| || || | ||||| || ||| | |||||
Sbjct 569 TGTGATATTGTTCATCAGCACGGCGGTCAAGTCTACATGGATGGTGCCAATATGAATGCT 510
Query 154989 CAGGTAGGACTAGCAAAACCATGTGAGTATGGTGCAGATGTATGTCATCTAAACTTACAT 155048
|| | || | || ||||| |||||| ||||| |||||||| ||| | ||
Sbjct 509 CAAATTGGGTTGTGTTCGCCTGGTGAGATTGGTGCTGATGTCTGTCATCTCAACCTTCAC 450
Query 155049 AAAACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATAGGTGTA 155105
|| |||||||||||||||||||| || ||||| || || || || || || ||||||
Sbjct 449 AAGACATTCTGTATTCCACATGGTGGCGGAGGACCAGGTGTTGGACCAATTGGTGTA 393
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 579186663022400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |