Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08- 07] 3,610 sequences; 36,184,363 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq443 165 2e-35 seq1292 129 1e-24 seq839 111 3e-19 seq60 91.5 3e-13 >seq443 Length=6205 Score = 165 bits (182), Expect = 2e-35 Identities = 159/204 (78%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| | |||| ||| || ||||| |||||||| | ||||||||| ||||| || | ||| Sbjct 2897 GTGCAAAGTGCTCTCCTTCTGAATGTTGTAATCAGAAAGAGTTCTGCCATCCTCCAACTG 2956 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || || ||||| | ||| |||||||| || ||||| || || ||||||||||| || Sbjct 2957 CTTTCCAGCAAAGATCAATCGCTGTTGGTCCGGTGGAATACCCTCCTTGTCTTGAATCTT 3016 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 | |||||| || |||||||| || || ||||||||| | |||| |||||||| || Sbjct 3017 TGACTTGACATTGTCAATGGTATCTGACGATTCCACTTCCAATGTAATGGTCTTTCCGGT 3076 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 |||||| || ||||| | ||||| Sbjct 3077 CAAAGTCTTGACGAAGATCTGCAT 3100 Score = 138 bits (152), Expect = 3e-27 Identities = 147/194 (76%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||| ||||| |||||||| || ||||| ||| || || | ||||||||||| || Sbjct 3353 GTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAGGGTGCGACCATCTTCGAGTTG 3412 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||||| |||||||| | |||||||| || ||||||||||| || ||||| || || || Sbjct 3413 TTTACCAGCGAAGATCAAACGTTGTTGATCCGGAGGAATGCCCTCCTTGTCCTGGATCTT 3472 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||||||||| || |||||||| || || || ||||| || | ||||| || || Sbjct 3473 GGACTTGACGTTGTCGATGGTGTCGGACGACTCGACCTCAAGAGTGATGGTCTTGCCAGT 3532 Query 195117 CAAAGTTTTTACGA 195130 | ||| || |||| Sbjct 3533 AAGAGTCTTGACGA 3546 Score = 118 bits (130), Expect = 2e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || || ||||||||||| || || ||||| || | ||||| | ||||| || || ||| Sbjct 3126 TGCAGTGTGGACTCTTTCTGGATGTTGTAGTCTGATAGAGTGCGGCCATCCTCAAGTTGC 3185 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 ||||| || |||||||| ||||| ||||| || || || || || || |||||||| ||| Sbjct 3186 TTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGGATACCCTCCTTATCTTGAATCTTT 3245 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 || ||||| || ||||| || || || || || | || | |||||||| || Sbjct 3246 GATTTCACGTTGTCGATGGTATCTGACGACTCAACCTCCAATGTGATTGTCTTTCCGGTA 3305 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 | || || ||||| | |||||| Sbjct 3306 AGTGTCTTCACGAAGATTTGCAT 3328 >seq1292 Length=3705 Score = 129 bits (142), Expect = 1e-24 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||||||||| || ||||| || ||||| |||| ||| || | ||||||||||| || Sbjct 1967 GTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGTCCATCTTCGAGTTG 2026 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || |||||||| || ||||| || || || || || || || ||||| || || || Sbjct 2027 CTTGCCGGCGAAGATCAGACGTTGCTGATCAGGTGGGATTCCCTCCTTGTCCTGGATCTT 2086 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||| || || ||||| || || ||| || || ||||| | || || || || Sbjct 2087 GGACTTGACATTGTCGATGGTATCAGAGGATTCAACCTCGAGGGTGATGGTTTTACCCGT 2146 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | ||||| ||||| | ||||| Sbjct 2147 GAGGGTTTTGACGAAGATCTGCAT 2170 >seq839 Length=32500 Score = 111 bits (122), Expect = 3e-19 Identities = 132/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012 ||||| || ||||| || | ||| |||| || || ||||| ||||| || |||||||| Sbjct 17539 TTTTGGATGTTGTAGTCTGAAAGGGTTCGTCCGTCCTCGAGTTGCTTTCCGGCGAAGATC 17598 Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072 | ||||||||||| || ||||| || || ||||| || || || |||||| || ||| Sbjct 17599 AAACGTTGTTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCA 17658 Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131 || || || || || || |||||||| | |||||||| || | || || ||||| Sbjct 17659 ATAGTATCGGAGGACTCGACCTCAAGGGTGATGGTCTTTCCCGTAAGGGTCTTGACGAA 17717 >seq60 Length=14677 Score = 91.5 bits (100), Expect = 3e-13 Identities = 185/275 (67%), Gaps = 0/275 (0%) Strand=Plus/Minus Query 160587 TTTTCTACGCCATCTGGACTTCCGATCTTTTCATGAAGAGAGTGAAAGACAATGGGGATT 160646 ||||||| ||| | |||| | | ||||| ||||||||| | || || | || | ||||| Sbjct 9209 TTTTCTATGCCTTGTGGATTCCGGATCTCTTCATGAAGCGTGTTGAAAAGAACGCGGATT 9150 Query 160647 GGAGCCTTTTCTGTCCCAATGAAGCGCCTGGACTTGATGATGTTTATGGTTCCGAGTTCG 160706 ||| || | || ||||||||| ||||| | | |||||| ||||| |||||| | Sbjct 9149 GGACACTAATGTGCCCCAATGAATGTCCTGGGTTGGCTGATGTATATGGCGACGAGTTTG 9090 Query 160707 AGACTCTTTATGAAAGATACGAAAAAGAGGGAAGAGCCAAAAAGGTCGTGAAGGCCCAAG 160766 | |||| ||||| || || || || || || |||| ||| | | || |||||| Sbjct 9089 AAGCTCTCTATGAGAGTTATGAGAAGGAAGGTAGAGGTCGCAAGACCATCAAAGCCCAAA 9030 Query 160767 AACTGTGGCATCACATCCTTGTCGCCCAAGTCGAGGTGGGTATGCCCTTTATCGCATACA 160826 | || ||| | ||| || | || ||| |||| || | || || || |||| Sbjct 9029 AGCTTTGGTACTCCATTCTCGAGGCTCAAACCGAGACCGGAAATCCATTCATGCTTTACA 8970 Query 160827 AGGATGCCATCTGTCGCAAGAGTAACCAGAAGAAC 160861 ||||||| | ||||| ||||| |||||| Sbjct 8969 AGGATGCATGCAACAAGAAGAGCAACCAAAAGAAC 8935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109430283008870