Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08- 07] 3,610 sequences; 36,184,363 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq60 168 8e-37 seq3070 82.4 9e-11 >seq60 Length=14677 Score = 168 bits (186), Expect = 8e-37 Identities = 303/440 (69%), Gaps = 2/440 (0%) Strand=Plus/Plus Query 48126 TCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGAC 48185 ||||| || || ||||| |||| | | ||||||||||||||||| || ||||| | || | Sbjct 9089 TCAAACTCGTCGCCATATACATCAGCCAACCCAGGACATTCATTGGGGCACATTAGTGTC 9148 Query 48186 CAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATA-AA 48244 |||||| | | |||| || | |||| || | ||| || ||||| | || ||| || Sbjct 9149 CAATCCGCGTTCTTTTCAACACGCTTCATGAAGAGATCCGGAATCCACA-AGGCATAGAA 9207 Query 48245 TAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCAT 48304 | ||| | | | | |||||| |||||| ||| || ||| || || || || | Sbjct 9208 AAGATCACGGGCGCGGACTTCTTCCTTGCCATGGTTCTTTCGAAGGTCCAGGAACTCGAA 9267 Query 48305 TATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCC 48364 | ||| || ||||| || || | ||| | ||| | | |||| || || || || || || Sbjct 9268 AACATCTGCGTGCCAAGGCTCAAGATAGACTGCAAATGCACCAGGACGCTTGTTTCCACC 9327 Query 48365 TTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGA 48424 ||| || | ||||| ||||| ||||| |||||| || ||| || || || || || || Sbjct 9328 TTGGTCGACGTATCTAGCAGTGTTGTTGAAAACTCGTAGCATGGGTACGATGCCGTTGGA 9387 Query 48425 TATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAAATACC 48484 |||| ||||| || | || || ||| | || | || | ||| | ||| Sbjct 9388 GTTACCGTTGGTACCGGCGATGTATGCACCAGTGGCACGGATTCTGTGAATGTTGAGACC 9447 Query 48485 TATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTC 48544 ||||| || || ||||||| || | |||||| || |||||||||||||| || || Sbjct 9448 AATACCTCCAGCATTTTTAGAGATCATAGCACATGTCTTGAGGGTATCATAAATACCATC 9507 Query 48545 TATACTATCATCTATCATAT 48564 ||||| || || |||||| Sbjct 9508 AATACTGTCCTCCTTCATAT 9527 >seq3070 Length=35956 Score = 82.4 bits (90), Expect = 9e-11 Identities = 120/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 19003 TCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCA 19062 ||||| || || || | ||||| ||||| || | || || | |||||| |||||||| Sbjct 28853 TCATTGGAGAAAGTGAGACCAGCCATCAAGCCACGCTTCTTGAGCCAGAAGATAGAAGCG 28912 Query 19063 AATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAA 19122 ||||||||| ||||| || || || || || ||||||||||| || | | || | Sbjct 28913 AATGATCCACTGAAGAAGATGCCCTCAACAGCAGCAAAAGCAACCAGACGCTGAGCAAAG 28972 Query 19123 CTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTT 19172 ||| | || | ||||||||| | | ||||| || || ||||| || Sbjct 28973 GTAGAGTTTTTGTCTTGAATCCATCTGACAGCCCAGTCGGCTTTCTTCTT 29022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562083434840400