Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08-
07] 3,610 sequences; 36,184,363 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq60 168 8e-37
seq3070 82.4 9e-11
>seq60
Length=14677
Score = 168 bits (186), Expect = 8e-37
Identities = 303/440 (69%), Gaps = 2/440 (0%)
Strand=Plus/Plus
Query 48126 TCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGAC 48185
||||| || || ||||| |||| | | ||||||||||||||||| || ||||| | || |
Sbjct 9089 TCAAACTCGTCGCCATATACATCAGCCAACCCAGGACATTCATTGGGGCACATTAGTGTC 9148
Query 48186 CAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATA-AA 48244
|||||| | | |||| || | |||| || | ||| || ||||| | || ||| ||
Sbjct 9149 CAATCCGCGTTCTTTTCAACACGCTTCATGAAGAGATCCGGAATCCACA-AGGCATAGAA 9207
Query 48245 TAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCAT 48304
| ||| | | | | |||||| |||||| ||| || ||| || || || || |
Sbjct 9208 AAGATCACGGGCGCGGACTTCTTCCTTGCCATGGTTCTTTCGAAGGTCCAGGAACTCGAA 9267
Query 48305 TATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCC 48364
| ||| || ||||| || || | ||| | ||| | | |||| || || || || || ||
Sbjct 9268 AACATCTGCGTGCCAAGGCTCAAGATAGACTGCAAATGCACCAGGACGCTTGTTTCCACC 9327
Query 48365 TTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGA 48424
||| || | ||||| ||||| ||||| |||||| || ||| || || || || || ||
Sbjct 9328 TTGGTCGACGTATCTAGCAGTGTTGTTGAAAACTCGTAGCATGGGTACGATGCCGTTGGA 9387
Query 48425 TATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAAATACC 48484
|||| ||||| || | || || ||| | || | || | ||| | |||
Sbjct 9388 GTTACCGTTGGTACCGGCGATGTATGCACCAGTGGCACGGATTCTGTGAATGTTGAGACC 9447
Query 48485 TATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTC 48544
||||| || || ||||||| || | |||||| || |||||||||||||| || ||
Sbjct 9448 AATACCTCCAGCATTTTTAGAGATCATAGCACATGTCTTGAGGGTATCATAAATACCATC 9507
Query 48545 TATACTATCATCTATCATAT 48564
||||| || || ||||||
Sbjct 9508 AATACTGTCCTCCTTCATAT 9527
>seq3070
Length=35956
Score = 82.4 bits (90), Expect = 9e-11
Identities = 120/170 (71%), Gaps = 0/170 (0%)
Strand=Plus/Plus
Query 19003 TCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCA 19062
||||| || || || | ||||| ||||| || | || || | |||||| ||||||||
Sbjct 28853 TCATTGGAGAAAGTGAGACCAGCCATCAAGCCACGCTTCTTGAGCCAGAAGATAGAAGCG 28912
Query 19063 AATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAA 19122
||||||||| ||||| || || || || || ||||||||||| || | | || |
Sbjct 28913 AATGATCCACTGAAGAAGATGCCCTCAACAGCAGCAAAAGCAACCAGACGCTGAGCAAAG 28972
Query 19123 CTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTT 19172
||| | || | ||||||||| | | ||||| || || ||||| ||
Sbjct 28973 GTAGAGTTTTTGTCTTGAATCCATCTGACAGCCCAGTCGGCTTTCTTCTT 29022
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562083434840400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |