Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08- 07] 3,610 sequences; 36,184,363 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq1872 141 7e-28 seq101 102 7e-16 seq201 93.3 3e-13 >seq1872 Length=6849 Score = 141 bits (156), Expect = 7e-28 Identities = 263/384 (68%), Gaps = 3/384 (1%) Strand=Plus/Plus Query 552210 AATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAA 552269 || || |||||||||||||| || ||||| || | || || ||||| |||||||| | Sbjct 6139 AACCCTGATGAGGCTGTTGCATACGGTGCTGCCGTCCAGGCTGCTATCCTTTCTGGTGAC 6198 Query 552270 ACTG-ATGAAAAACTACAAA--ATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGT 552326 ||| || || |||| || | || | ||| | ||||| | || | ||||||||| Sbjct 6199 ACTTCATCCAAGTCTACCAACGAGATCCTTCTTCTCGATGTCGCGCCATTGTCTCTTGGT 6258 Query 552327 TTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGT 552386 | || || | ||| || ||||| || || || | | || || || ||||| Sbjct 6259 ATCGAGACTGCTGGTGGACAAATGACCAAGCTCATTCACCGCAACACCACCATTCCCACC 6318 Query 552387 AAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATT 552446 || || ||| || || ||||| | || ||||| ||| ||| ||| |||||| | Sbjct 6319 AAGAAGTCTGAAGTCTTCTCTACCTTCTCCGATAACCAACCTGGTGTCTTGATTCAAGTC 6378 Query 552447 TTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAA 552506 || || || ||||||| ||| || || || || | || || | ||| | | Sbjct 6379 TTCGAGGGTGAAAGAACGCGCACAAAGGACAACAACCTTCTCGGAAAGTTTGAGCTCACT 6438 Query 552507 GGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCC 552566 |||||||| |||||||||||||| || || || || || || || |||||||| |||||| Sbjct 6439 GGTATTCCACCTGCTCCTCGTGGTGTTCCACAGATCGAGGTCACCTTCGATATTGATGCC 6498 Query 552567 AATGGAATTTTGAATGTGACTGCT 552590 || || || ||||||| ||||| Sbjct 6499 AACGGTATCATGAATGTCTCTGCT 6522 Score = 123 bits (136), Expect = 2e-22 Identities = 351/536 (65%), Gaps = 4/536 (1%) Strand=Plus/Plus Query 549994 TATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGT 550053 ||| ||||| ||||| || || || || || || ||| | | | ||| | | | Sbjct 5067 TATCGGTATCGATTTGGGTACTACCTACTCGTGCGTGGGTATCTTCCGTGATGACAGAAT 5126 Query 550054 TGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGA 550113 |||||||| ||||| || ||||| ||| |||| ||||| || | ||| ||||||| || Sbjct 5127 CGAAATTATCGCCAACGACCAAGGAAACCGAACAACTCCTTCGTTCGTTGCTTTCACAGA 5186 Query 550114 AACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATAC 550173 || |||| | | | || ||||| ||||| | |||| | | || ||||| || || Sbjct 5187 CACCGAACGTCTGATCGGAGATGCCGCAAAGAACCAAGTCGCCATGAACCCTACAAACAC 5246 Query 550174 TATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGA 550233 | || |||||||| ||| | || || | | || || | || || || || Sbjct 5247 AGTCTTCGATGCTAAGCGTCTGATCGGTCGTAAATTCGCCGACCCAGAAGTCCAAGCTGA 5306 Query 550234 TATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAG-CTA 550292 ||||||||| | || ||| | | | | | ||||| || ||||||| | | Sbjct 5307 TATGAAGCACTTCCCATTCAAGGTCATCGACCGTGGCGGAAAGCCAGTCATTGAAGTCGA 5366 Query 550293 CTCATGAAGGATCTGT-TAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAATG 550351 | | |||| | | ||| ||||| |||| ||| |||| || || ||||| || | Sbjct 5367 GT--TCAAGGGTGAGGCTAAGCAATTCACACCCGAAGAAATCTCCTCGATGGTCTTGGTC 5424 Query 550352 AAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACT 550411 || |||| | || || || | | ||| | || | | || || | ||| Sbjct 5425 AAGATGAGGGAGACTGCTGAGGCCTACCTCGGTGGAACGGTCAACAACGCTGTCGTCACT 5484 Query 550412 GTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCT 550471 || |||||||| || | ||||| ||||||||||| || ||||| || || | || || Sbjct 5485 GTTCCAGCATACTTCACCGACTCCCAACGTCAAGCCACAAAAGACGCAGGTCTCATCGCC 5544 Query 550472 GGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527 || || |||||||| ||||| ||||| || || || || ||||| |||| || || Sbjct 5545 GGTCTCAATGTTCTCCGTATCATCAACGAGCCCACCGCCGCTGCCATTGCTTACGG 5600 >seq101 Length=46449 Score = 102 bits (112), Expect = 7e-16 Identities = 248/373 (66%), Gaps = 2/373 (1%) Strand=Plus/Minus Query 551895 GCTCTTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACT 551954 |||||||||||||| ||||| |||||||| | || || || | ||||| ||| | Sbjct 31095 GCTCTTCGTCGTCTTAGAACAGCTTGCGAGCGTGCTAAGCGTACCCTTTCTAACGGTGCC 31036 Query 551955 CAAACCACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCG 552014 ||||| ||||| | || ||||| ||||| || || | || | | ||| | Sbjct 31035 TCTACCACCGTTGAAATCGACTCATTGTTTGACGGTGAAGACTTCAACGCACAAATTACC 30976 Query 552015 AGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAA-ACAATTGAACCAGTAGA 552073 | |||| ||| || ||| | | | | || || || | || || || | Sbjct 30975 CGTGCCAGATTCGAGGATCTCAACG-TCAAGGCATTCCAAGGCACCTTGGAGCCCGTTGC 30917 Query 552074 ACAAGTTTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGG 552133 |||||| | | ||| | || || || |||||||| || |||| || || |||||||| Sbjct 30916 GCAAGTTCTCAAGGATGCTAACATCGACAAATCCAAGGTTGATGAGATCGTCCTTGTTGG 30857 Query 552134 TGGATCTACAAGAATTCCTAAAATTCGCGAAATGTTAAGTTCTTATTTCAATGGTAAAAA 552193 ||||||||| | |||||||| ||| | | || || | ||||| || || || Sbjct 30856 TGGATCTACCCGTATTCCTAAGGTTCAAAAGCTCTTGAGCGAGTTCTTCAACGGAAAGAA 30797 Query 552194 ATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGC 552253 || | |||| |||| || |||||||||||||| || ||||| || ||||||| | Sbjct 30796 GTTGGAGAAAAGCATTAACCCTGATGAGGCTGTTGCTTACGGTGCTGCTGTTCAAGCGGG 30737 Query 552254 TATTCTTTCTGGA 552266 ||| || || ||| Sbjct 30736 TATCCTCTCAGGA 30724 >seq201 Length=62902 Score = 93.3 bits (102), Expect = 3e-13 Identities = 256/390 (66%), Gaps = 8/390 (2%) Strand=Plus/Plus Query 552210 AATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAA 552269 || || ||||||||||| || | |||||||| |||||| | | || | || ||| Sbjct 37139 AACCCTGATGAGGCTGTCGCTTTCGGTGCCGCTGTTCAAGGTGGTGTTTTGTCCGGA--- 37195 Query 552270 ACTGATGAAAA-ACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTT 552328 || ||| ||| | | || || || | ||||| | || | |||||||| | Sbjct 37196 ---GAGGAAGGTACTG-ATGACATCGTTCTCATGGATGTCAACCCATTGACTCTTGGTAT 37251 Query 552329 AGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAA 552388 || || ||||||| ||||||| || | ||| ||||| || ||| ||| Sbjct 37252 TGAGACTACTGGAGGTGTTATGACCAAGTTGATCCCAAGAAACACCGTTATCCCTACCCG 37311 Query 552389 AAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTT 552448 ||||||| | || || || | || || ||| | | || |||||| | | Sbjct 37312 CAAATCTCAAATCTTCTCCACAGCCGCCGACAACCAACCCGTAGTCCTGATTCAAGTCTA 37371 Query 552449 TGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGG 552508 ||||||||| | || || ||||| || || | ||||||| || | || || Sbjct 37372 TGAAGGAGAGCGTGCTTTGACGAAAGACAACAACAACCTTGGTAAATTCGAATTGACTGG 37431 Query 552509 TATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAA 552568 |||||| || || || ||||| || || |||||||||||| | ||||| | || ||||| Sbjct 37432 TATTCCACCAGCACCACGTGGTGTTCCTCAAATTGAAGTTTCCTTCGAACTTGACGCCAA 37491 Query 552569 TGGAATTTTGAATGTGACTGCTTGTGATAA 552598 ||||| ||||| || || ||| |||| || Sbjct 37492 CGGAATCTTGAAGGTTACCGCTGGTGACAA 37521 Score = 87.8 bits (96), Expect = 1e-11 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 549986 AAAGTAGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAAT 550045 ||| ||| || ||||| ||| | ||||||||||| ||| || ||||| |||||| Sbjct 36003 AAAATAGTCATCGGTATCGATCTTGGAACCACATACTCTTGCGTCGGTGTGATGCAAAAG 36062 Query 550046 GGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCT 550105 || |||||||| ||| | | || || ||||| || | | |||||| || ||||| | Sbjct 36063 GGAAAAGTTGAGATTCTGGTAAACGACCAAGGACACCGTATTACTCCTTCATATGTCGCC 36122 Query 550106 TTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAA 550143 ||||| || |||| ||| || || |||||||| || Sbjct 36123 TTCACCGATGAGGAACGTTTGGTCGGAGATGCAGCCAA 36160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029105086918900