Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08-
07] 3,610 sequences; 36,184,363 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq1872 141 7e-28
seq101 102 7e-16
seq201 93.3 3e-13
>seq1872
Length=6849
Score = 141 bits (156), Expect = 7e-28
Identities = 263/384 (68%), Gaps = 3/384 (1%)
Strand=Plus/Plus
Query 552210 AATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAA 552269
|| || |||||||||||||| || ||||| || | || || ||||| |||||||| |
Sbjct 6139 AACCCTGATGAGGCTGTTGCATACGGTGCTGCCGTCCAGGCTGCTATCCTTTCTGGTGAC 6198
Query 552270 ACTG-ATGAAAAACTACAAA--ATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGT 552326
||| || || |||| || | || | ||| | ||||| | || | |||||||||
Sbjct 6199 ACTTCATCCAAGTCTACCAACGAGATCCTTCTTCTCGATGTCGCGCCATTGTCTCTTGGT 6258
Query 552327 TTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGT 552386
| || || | ||| || ||||| || || || | | || || || |||||
Sbjct 6259 ATCGAGACTGCTGGTGGACAAATGACCAAGCTCATTCACCGCAACACCACCATTCCCACC 6318
Query 552387 AAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATT 552446
|| || ||| || || ||||| | || ||||| ||| ||| ||| |||||| |
Sbjct 6319 AAGAAGTCTGAAGTCTTCTCTACCTTCTCCGATAACCAACCTGGTGTCTTGATTCAAGTC 6378
Query 552447 TTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAA 552506
|| || || ||||||| ||| || || || || | || || | ||| | |
Sbjct 6379 TTCGAGGGTGAAAGAACGCGCACAAAGGACAACAACCTTCTCGGAAAGTTTGAGCTCACT 6438
Query 552507 GGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCC 552566
|||||||| |||||||||||||| || || || || || || || |||||||| ||||||
Sbjct 6439 GGTATTCCACCTGCTCCTCGTGGTGTTCCACAGATCGAGGTCACCTTCGATATTGATGCC 6498
Query 552567 AATGGAATTTTGAATGTGACTGCT 552590
|| || || ||||||| |||||
Sbjct 6499 AACGGTATCATGAATGTCTCTGCT 6522
Score = 123 bits (136), Expect = 2e-22
Identities = 351/536 (65%), Gaps = 4/536 (1%)
Strand=Plus/Plus
Query 549994 TATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGT 550053
||| ||||| ||||| || || || || || || ||| | | | ||| | | |
Sbjct 5067 TATCGGTATCGATTTGGGTACTACCTACTCGTGCGTGGGTATCTTCCGTGATGACAGAAT 5126
Query 550054 TGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGA 550113
|||||||| ||||| || ||||| ||| |||| ||||| || | ||| ||||||| ||
Sbjct 5127 CGAAATTATCGCCAACGACCAAGGAAACCGAACAACTCCTTCGTTCGTTGCTTTCACAGA 5186
Query 550114 AACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATAC 550173
|| |||| | | | || ||||| ||||| | |||| | | || ||||| || ||
Sbjct 5187 CACCGAACGTCTGATCGGAGATGCCGCAAAGAACCAAGTCGCCATGAACCCTACAAACAC 5246
Query 550174 TATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGA 550233
| || |||||||| ||| | || || | | || || | || || || ||
Sbjct 5247 AGTCTTCGATGCTAAGCGTCTGATCGGTCGTAAATTCGCCGACCCAGAAGTCCAAGCTGA 5306
Query 550234 TATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAG-CTA 550292
||||||||| | || ||| | | | | | ||||| || ||||||| | |
Sbjct 5307 TATGAAGCACTTCCCATTCAAGGTCATCGACCGTGGCGGAAAGCCAGTCATTGAAGTCGA 5366
Query 550293 CTCATGAAGGATCTGT-TAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAATG 550351
| | |||| | | ||| ||||| |||| ||| |||| || || ||||| || |
Sbjct 5367 GT--TCAAGGGTGAGGCTAAGCAATTCACACCCGAAGAAATCTCCTCGATGGTCTTGGTC 5424
Query 550352 AAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACT 550411
|| |||| | || || || | | ||| | || | | || || | |||
Sbjct 5425 AAGATGAGGGAGACTGCTGAGGCCTACCTCGGTGGAACGGTCAACAACGCTGTCGTCACT 5484
Query 550412 GTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCT 550471
|| |||||||| || | ||||| ||||||||||| || ||||| || || | || ||
Sbjct 5485 GTTCCAGCATACTTCACCGACTCCCAACGTCAAGCCACAAAAGACGCAGGTCTCATCGCC 5544
Query 550472 GGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527
|| || |||||||| ||||| ||||| || || || || ||||| |||| || ||
Sbjct 5545 GGTCTCAATGTTCTCCGTATCATCAACGAGCCCACCGCCGCTGCCATTGCTTACGG 5600
>seq101
Length=46449
Score = 102 bits (112), Expect = 7e-16
Identities = 248/373 (66%), Gaps = 2/373 (1%)
Strand=Plus/Minus
Query 551895 GCTCTTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACT 551954
|||||||||||||| ||||| |||||||| | || || || | ||||| ||| |
Sbjct 31095 GCTCTTCGTCGTCTTAGAACAGCTTGCGAGCGTGCTAAGCGTACCCTTTCTAACGGTGCC 31036
Query 551955 CAAACCACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCG 552014
||||| ||||| | || ||||| ||||| || || | || | | ||| |
Sbjct 31035 TCTACCACCGTTGAAATCGACTCATTGTTTGACGGTGAAGACTTCAACGCACAAATTACC 30976
Query 552015 AGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAA-ACAATTGAACCAGTAGA 552073
| |||| ||| || ||| | | | | || || || | || || || |
Sbjct 30975 CGTGCCAGATTCGAGGATCTCAACG-TCAAGGCATTCCAAGGCACCTTGGAGCCCGTTGC 30917
Query 552074 ACAAGTTTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGG 552133
|||||| | | ||| | || || || |||||||| || |||| || || ||||||||
Sbjct 30916 GCAAGTTCTCAAGGATGCTAACATCGACAAATCCAAGGTTGATGAGATCGTCCTTGTTGG 30857
Query 552134 TGGATCTACAAGAATTCCTAAAATTCGCGAAATGTTAAGTTCTTATTTCAATGGTAAAAA 552193
||||||||| | |||||||| ||| | | || || | ||||| || || ||
Sbjct 30856 TGGATCTACCCGTATTCCTAAGGTTCAAAAGCTCTTGAGCGAGTTCTTCAACGGAAAGAA 30797
Query 552194 ATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGC 552253
|| | |||| |||| || |||||||||||||| || ||||| || ||||||| |
Sbjct 30796 GTTGGAGAAAAGCATTAACCCTGATGAGGCTGTTGCTTACGGTGCTGCTGTTCAAGCGGG 30737
Query 552254 TATTCTTTCTGGA 552266
||| || || |||
Sbjct 30736 TATCCTCTCAGGA 30724
>seq201
Length=62902
Score = 93.3 bits (102), Expect = 3e-13
Identities = 256/390 (66%), Gaps = 8/390 (2%)
Strand=Plus/Plus
Query 552210 AATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAA 552269
|| || ||||||||||| || | |||||||| |||||| | | || | || |||
Sbjct 37139 AACCCTGATGAGGCTGTCGCTTTCGGTGCCGCTGTTCAAGGTGGTGTTTTGTCCGGA--- 37195
Query 552270 ACTGATGAAAA-ACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTT 552328
|| ||| ||| | | || || || | ||||| | || | |||||||| |
Sbjct 37196 ---GAGGAAGGTACTG-ATGACATCGTTCTCATGGATGTCAACCCATTGACTCTTGGTAT 37251
Query 552329 AGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAA 552388
|| || ||||||| ||||||| || | ||| ||||| || ||| |||
Sbjct 37252 TGAGACTACTGGAGGTGTTATGACCAAGTTGATCCCAAGAAACACCGTTATCCCTACCCG 37311
Query 552389 AAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTT 552448
||||||| | || || || | || || ||| | | || |||||| | |
Sbjct 37312 CAAATCTCAAATCTTCTCCACAGCCGCCGACAACCAACCCGTAGTCCTGATTCAAGTCTA 37371
Query 552449 TGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGG 552508
||||||||| | || || ||||| || || | ||||||| || | || ||
Sbjct 37372 TGAAGGAGAGCGTGCTTTGACGAAAGACAACAACAACCTTGGTAAATTCGAATTGACTGG 37431
Query 552509 TATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAA 552568
|||||| || || || ||||| || || |||||||||||| | ||||| | || |||||
Sbjct 37432 TATTCCACCAGCACCACGTGGTGTTCCTCAAATTGAAGTTTCCTTCGAACTTGACGCCAA 37491
Query 552569 TGGAATTTTGAATGTGACTGCTTGTGATAA 552598
||||| ||||| || || ||| |||| ||
Sbjct 37492 CGGAATCTTGAAGGTTACCGCTGGTGACAA 37521
Score = 87.8 bits (96), Expect = 1e-11
Identities = 114/158 (72%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 549986 AAAGTAGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAAT 550045
||| ||| || ||||| ||| | ||||||||||| ||| || ||||| ||||||
Sbjct 36003 AAAATAGTCATCGGTATCGATCTTGGAACCACATACTCTTGCGTCGGTGTGATGCAAAAG 36062
Query 550046 GGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCT 550105
|| |||||||| ||| | | || || ||||| || | | |||||| || ||||| |
Sbjct 36063 GGAAAAGTTGAGATTCTGGTAAACGACCAAGGACACCGTATTACTCCTTCATATGTCGCC 36122
Query 550106 TTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAA 550143
||||| || |||| ||| || || |||||||| ||
Sbjct 36123 TTCACCGATGAGGAACGTTTGGTCGGAGATGCAGCCAA 36160
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4029105086918900
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |