Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08-
07] 3,610 sequences; 36,184,363 total letters
Query= NC_018504.1
Length=123876
Score E
Sequences producing significant alignments: (Bits) Value
seq443 107 2e-18
>seq443
Length=6205
Score = 107 bits (118), Expect = 2e-18
Identities = 142/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320
|| || |||||||| ||||||||||| || ||||| ||| | || | |||| ||
Sbjct 3348 ACCAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAGGGTGCGACCATCTTCG 3407
Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380
| ||| ||||| || || |||||||| |||||||| || |||||||| || || || ||
Sbjct 3408 AGTTGTTTACCAGCGAAGATCAAACGTTGTTGATCCGGAGGAATGCCCTCCTTGTCCTGG 3467
Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440
|| || || || | || | ||||| |||| || || |||||||||| || |||
Sbjct 3468 ATCTTGGACTTGACGTTGTCGATGGTGTCGGACGACTCGACCTCAAGAGTGATGGTCTTG 3527
Query 101441 CCGGTTAAAGTTTTTAC 101457
|| || | ||| || ||
Sbjct 3528 CCAGTAAGAGTCTTGAC 3544
Score = 93.3 bits (102), Expect = 3e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320
|| ||||| || || || ||||| || || ||||| || | | ||| | | |||| ||
Sbjct 3120 ACCAAATGCAGTGTGGACTCTTTCTGGATGTTGTAGTCTGATAGAGTGCGGCCATCCTCA 3179
Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380
| ||||||||| ||||| || | ||| || || || || || || || || |||||||||
Sbjct 3180 AGTTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGGATACCCTCCTTATCTTGA 3239
Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440
|| ||| ||| || | || | || || |||| || || || | |||| || ||
Sbjct 3240 ATCTTTGATTTCACGTTGTCGATGGTATCTGACGACTCAACCTCCAATGTGATTGTCTTT 3299
Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469
||||| | || || || || || |||||
Sbjct 3300 CCGGTAAGTGTCTTCACGAAGATTTGCAT 3328
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396260964988770
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |