Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08-
07] 3,610 sequences; 36,184,363 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq3070 141 2e-28
>seq3070
Length=35956
Score = 141 bits (156), Expect = 2e-28
Identities = 350/525 (67%), Gaps = 27/525 (5%)
Strand=Plus/Plus
Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898
||||||||| || ||||| ||||| |||||||||||||| || | | |||||||||||
Sbjct 28522 CTGGTAGTCACCAACTCTCTTCTCGAAGAAGTTTGTCTTGCCTGCTAGGGAGATGTTCTC 28581
Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACC----CGTGTC-AGGCCCATCTGTTCC 47953
||||||| ||| ||||||| | || |||||| ||| | | | || ||
Sbjct 28582 CATGAAGTCGAATGGGTTGGCAGACTTGTACACCTTCTCGTTACCAAGAGCAACT----- 28636
Query 47954 AGCAGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATG 48013
|| || |||| |||||| |||||||||||| ||| | | | ||||||||| |
Sbjct 28637 AGGAGACGATCGGCGACGAACTCGATGTATTGCTTCATCAAGTTCGCGTTCATGCCAAGA 28696
Query 48014 AGGGACACGGGCAA-AGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCAC 48072
|| | ||| | || ||||| || | || || | || |||| || || || |
Sbjct 28697 AGTG-CACAAGGAAGAGCCTCGGTCAAGAATTCTTGTTCGATCTCGACAGCCTCTGTGAT 28755
Query 48073 AATCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTT------GGCATAGAG 48126
| | ||| |||| | | ||| | | ||||||| || ||||
Sbjct 28756 GACAT-CTT------GGACA--GCCTGCTTGCTTGGACGGTGCTTCAAGTGGGAGAAGAG 28806
Query 48127 CATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCA 48186
| ||| || ||||| | || | ||||| || ||| ||||||| | ||||||||
Sbjct 28807 GAGGCACGCGAAGTCGGTATGGAGACCTTCATCACGGGAGATGAGCTCATTGGAGAAAGT 28866
Query 48187 GAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAA 48246
|||||||| ||| | || | || ||||||||||| || | ||||| || ||| |||
Sbjct 28867 GAGACCAGCCATCAAGCCACGCTTCTTGAGCCAGAAGATAGAAGCGAATGATCCACTGAA 28926
Query 48247 GAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTC 48306
|||||||||||| || || || || || || | || | || | || ||| |||||
Sbjct 28927 GAAGATGCCCTCAACAGCAGCAAAAGCAACCAGACGCTGAGCAAAGGTAGAGTTTTTGTC 28986
Query 48307 TGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGG 48351
| ||||| | |||||||| || |||||||| ||||| ||
Sbjct 28987 TTGAATCCATCTGACAGCCCAGTCGGCTTTCTTCTTAATGCAAGG 29031
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 931490764582400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |