Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08- 07] 3,610 sequences; 36,184,363 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq3070 141 2e-28 >seq3070 Length=35956 Score = 141 bits (156), Expect = 2e-28 Identities = 350/525 (67%), Gaps = 27/525 (5%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||||||||| || ||||| ||||| |||||||||||||| || | | ||||||||||| Sbjct 28522 CTGGTAGTCACCAACTCTCTTCTCGAAGAAGTTTGTCTTGCCTGCTAGGGAGATGTTCTC 28581 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACC----CGTGTC-AGGCCCATCTGTTCC 47953 ||||||| ||| ||||||| | || |||||| ||| | | | || || Sbjct 28582 CATGAAGTCGAATGGGTTGGCAGACTTGTACACCTTCTCGTTACCAAGAGCAACT----- 28636 Query 47954 AGCAGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATG 48013 || || |||| |||||| |||||||||||| ||| | | | ||||||||| | Sbjct 28637 AGGAGACGATCGGCGACGAACTCGATGTATTGCTTCATCAAGTTCGCGTTCATGCCAAGA 28696 Query 48014 AGGGACACGGGCAA-AGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCAC 48072 || | ||| | || ||||| || | || || | || |||| || || || | Sbjct 28697 AGTG-CACAAGGAAGAGCCTCGGTCAAGAATTCTTGTTCGATCTCGACAGCCTCTGTGAT 28755 Query 48073 AATCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTT------GGCATAGAG 48126 | | ||| |||| | | ||| | | ||||||| || |||| Sbjct 28756 GACAT-CTT------GGACA--GCCTGCTTGCTTGGACGGTGCTTCAAGTGGGAGAAGAG 28806 Query 48127 CATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCA 48186 | ||| || ||||| | || | ||||| || ||| ||||||| | |||||||| Sbjct 28807 GAGGCACGCGAAGTCGGTATGGAGACCTTCATCACGGGAGATGAGCTCATTGGAGAAAGT 28866 Query 48187 GAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAA 48246 |||||||| ||| | || | || ||||||||||| || | ||||| || ||| ||| Sbjct 28867 GAGACCAGCCATCAAGCCACGCTTCTTGAGCCAGAAGATAGAAGCGAATGATCCACTGAA 28926 Query 48247 GAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTC 48306 |||||||||||| || || || || || || | || | || | || ||| ||||| Sbjct 28927 GAAGATGCCCTCAACAGCAGCAAAAGCAACCAGACGCTGAGCAAAGGTAGAGTTTTTGTC 28986 Query 48307 TGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGG 48351 | ||||| | |||||||| || |||||||| ||||| || Sbjct 28987 TTGAATCCATCTGACAGCCCAGTCGGCTTTCTTCTTAATGCAAGG 29031 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931490764582400