Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08-
07] 3,610 sequences; 36,184,363 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq3070 132 9e-26
>seq3070
Length=35956
Score = 132 bits (146), Expect = 9e-26
Identities = 340/513 (66%), Gaps = 13/513 (3%)
Strand=Plus/Minus
Query 25814 GCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGAT-CAACAGCCAGAGCGCTACGTTT 25872
|||| |||| ||| || ||||| | | ||||| ||| | | | | | |||| |||
Sbjct 29027 GCATTAAGAAGAAAGCCGACTGGGCTGTCAGATGGATTCAAGA-CAAAAACTCTACCTTT 28969
Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932
| |||| ||||| || ||||||||||| ||||||||||| ||||| || || || ||
Sbjct 28968 GCTCAGCGTCTGGTTGCTTTTGCTGCTGTTGAGGGCATCTTCTTCAGTGGATCATTCGCT 28909
Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGAGCT 25991
| ||||||||||||||| || || ||| | || || ||||| ||||| |||||
Sbjct 28908 TCTATCTTCTGGCTCAAGAAGCGTGGCTTGATGGCTGGTCT-CACTTTCTCCAATGAGCT 28850
Query 25992 CATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTT 26051
|||| | | || || |||||||| | || || || ||||| |||| | | ||||||
Sbjct 28849 CATCTCCCGTGATGAAGGTCTCCATACCGACTTCGCGTGCCTCCTCTTCTC---CCACTT 28793
Query 26052 GCTCCACAAACCTTCTCAAG-AGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCG 26110
| ||| || |||| || | ||| | | |||||| ||||||||| |||||||
Sbjct 28792 GAAGCACCGTCC-AAGCAAGCAGGCTGTCCAAGATGTCATCACAGAGGCTGTCGAGATCG 28734
Query 26111 AGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCA 26170
| | || || | ||||||||| | | |
Sbjct 28733 AACAAGAATTCTTGACCGAGGCTCTTCCTTGTGCACTTCTTGGCATGAACGCGAACTTGA 28674
Query 26171 TGAGCCAATACATTGAGTATGTGGCCGACCATCTGCT-GTGCCAGCTGGGACTCGCCAGA 26229
||| |||||||| |||| || ||||| | ||| || || | || || || |
Sbjct 28673 TGAAGCAATACATCGAGTTCGTCGCCGATCGTCTCCTAGTTGC-TCTTGGTAACGAGAAG 28615
Query 26230 CTCTAC-AGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGAC 26288
| ||| ||| ||| ||||| |||||||| ||||| ||||| || | | ||| |||||
Sbjct 28614 GTGTACAAGTCTGCC-AACCCATTCGACTTCATGGAGAACATCTCCCTAGCAGGCAAGAC 28556
Query 26289 CAACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321
|||||||| || ||||| || || ||||| ||
Sbjct 28555 AAACTTCTTCGAGAAGAGAGTTGGTGACTACCA 28523
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928802885878400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |