Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08- 07] 3,610 sequences; 36,184,363 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq3070 132 9e-26 >seq3070 Length=35956 Score = 132 bits (146), Expect = 9e-26 Identities = 340/513 (66%), Gaps = 13/513 (3%) Strand=Plus/Minus Query 25814 GCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGAT-CAACAGCCAGAGCGCTACGTTT 25872 |||| |||| ||| || ||||| | | ||||| ||| | | | | | |||| ||| Sbjct 29027 GCATTAAGAAGAAAGCCGACTGGGCTGTCAGATGGATTCAAGA-CAAAAACTCTACCTTT 28969 Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 | |||| ||||| || ||||||||||| ||||||||||| ||||| || || || || Sbjct 28968 GCTCAGCGTCTGGTTGCTTTTGCTGCTGTTGAGGGCATCTTCTTCAGTGGATCATTCGCT 28909 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGAGCT 25991 | ||||||||||||||| || || ||| | || || ||||| ||||| ||||| Sbjct 28908 TCTATCTTCTGGCTCAAGAAGCGTGGCTTGATGGCTGGTCT-CACTTTCTCCAATGAGCT 28850 Query 25992 CATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTT 26051 |||| | | || || |||||||| | || || || ||||| |||| | | |||||| Sbjct 28849 CATCTCCCGTGATGAAGGTCTCCATACCGACTTCGCGTGCCTCCTCTTCTC---CCACTT 28793 Query 26052 GCTCCACAAACCTTCTCAAG-AGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCG 26110 | ||| || |||| || | ||| | | |||||| ||||||||| ||||||| Sbjct 28792 GAAGCACCGTCC-AAGCAAGCAGGCTGTCCAAGATGTCATCACAGAGGCTGTCGAGATCG 28734 Query 26111 AGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCA 26170 | | || || | ||||||||| | | | Sbjct 28733 AACAAGAATTCTTGACCGAGGCTCTTCCTTGTGCACTTCTTGGCATGAACGCGAACTTGA 28674 Query 26171 TGAGCCAATACATTGAGTATGTGGCCGACCATCTGCT-GTGCCAGCTGGGACTCGCCAGA 26229 ||| |||||||| |||| || ||||| | ||| || || | || || || | Sbjct 28673 TGAAGCAATACATCGAGTTCGTCGCCGATCGTCTCCTAGTTGC-TCTTGGTAACGAGAAG 28615 Query 26230 CTCTAC-AGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGAC 26288 | ||| ||| ||| ||||| |||||||| ||||| ||||| || | | ||| ||||| Sbjct 28614 GTGTACAAGTCTGCC-AACCCATTCGACTTCATGGAGAACATCTCCCTAGCAGGCAAGAC 28556 Query 26289 CAACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321 |||||||| || ||||| || || ||||| || Sbjct 28555 AAACTTCTTCGAGAAGAGAGTTGGTGACTACCA 28523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928802885878400