Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08- 07] 3,610 sequences; 36,184,363 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq60 246 4e-60 >seq60 Length=14677 Score = 246 bits (272), Expect = 4e-60 Identities = 1179/1847 (64%), Gaps = 53/1847 (3%) Strand=Plus/Minus Query 75146 TACTTTGGTCTCAAAACCCTTGAGAAGAGC-TATCTTCAACGGCTCGATGGCATCCTCAT 75204 ||||| || |||| ||||| ||| || | || |||| || |||||||| | | Sbjct 9759 TACTTCGGATTCAAGACCCTCGAGC-GATCGTACCTTCTTCGACTCGATGGAAAAGTTGC 9701 Query 75205 GGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGA 75264 ||| ||||| | ||| ||||||| || || | || || ||||| || || || || Sbjct 9700 AGAACGTCCACAACAAATGATCATGCGTGTTGCCGTTGGTATTCACGGTGACGATATCGA 9641 Query 75265 TTCTGTCTTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAA 75323 | | | ||||| ||| || |||||| | | || |||| ||||| | || | Sbjct 9640 GAGCGCCATTGAGACCTACAACCTTATGTCCAACAAATAC-TTCACACACGCCTCCCCTA 9582 Query 75324 CCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACA 75383 | || ||| |||||||||||| | | ||| | || |||||||| || | | | Sbjct 9581 CACTTTTCTCCGCTGGTACACCACAAGCTCAGCTTTCATCATGCTTCCTCATTGATATGA 9522 Query 75384 AGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGT 75443 |||||||| || | ||||| |||| || || | | ||||| ||||| || Sbjct 9521 AGGAGGACAGTATTGATGGTATTTATGATACCCTCAAGACATGTGCTATGATCTCTAAAA 9462 Query 75444 GGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGG 75503 ||||| |||||||| | |||| || | | |||| | | || | Sbjct 9461 ATGCTGGAGGTATTGGTCTCAACATTCACAGAATCCGTGCCACTGGTGCATACATCGCCG 9402 Query 75504 GGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGC 75563 | || || ||| | || | || || | || ||||| || || || ||| ||| || Sbjct 9401 GTACCAACGGTAACTCCAACGGCATCGTACCCATGCTACGAGTTTTCAACAACACTGCTA 9342 Query 75564 GCTATGTAAATCAAGCGGG------GCGTCGCAAGGGGTCCATC-GCGGTCTACTTGGAA 75616 | || || | |||| || ||||| ||| ||| || ||||| | || Sbjct 9341 GATACGTCGACCAAGGTGGAAACAAGCGTCCT----GGTGCATTTGCAGTCTATCTTGAG 9286 Query 75617 CCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAG 75676 || ||||| || ||| | | |||||||| || | ||| ||||| || | ||||| Sbjct 9285 CCTTGGCACGCAGATGTTTTCGAGTTCCTGGACCTTCGAAAGAACCATGGCAAGGAAGAA 9226 Query 75677 GCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTT 75736 | || | ||||| || | || |||||||||| || || ||||||||||| ||| Sbjct 9225 GTCCGCGCCCGTGATCTTTTCTATGCCTTGTGGATTCCGGATCTCTTCATGAAGCGTGTT 9166 Query 75737 GAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCA---CCAGGTCTCTCCGAC 75793 || || | | ||| | || | || || ||| | | || || | | || Sbjct 9165 GAAAAGAACGCGGATTGGACACTAATGTGCCC---CAATGAATGTCCTGGGTTGGCTGAT 9109 Query 75794 GCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGC---C 75850 | || || ||||||||||| ||||| | ||||| |||| ||||||| | Sbjct 9108 GTATATGGCGACGAGTTTGAAGCTCTCTATGAGAGTTATGAGAAGGAAGGTAGAGGTCGC 9049 Query 75851 AATGCGACTGTACCAGCCGCCGATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACT 75910 || ||| | |||| | ||||| | | |||||| | | || || ||||| Sbjct 9048 AA---GACCATCAAAGCCCAAAAGCTTTGGTACTCCATTCTCGAGGCTCAAACCGAGACC 8992 Query 75911 GGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTG 75970 |||| |||| ||||||||||||||||| || ||||||||||| ||||||||||| | Sbjct 8991 GGAAATCCATTCATGCTTTACAAGGATGCATGCAACAAGAAGAGCAACCAAAAGAACCTC 8932 Query 75971 GGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAG 76030 || || || ||||| ||| | ||||| |||||| | || ||| | | ||||| Sbjct 8931 GGCACCATTCGCAGCTCCAATTTGTGCACAGAAATTGTCGAATACTCTGCCCCAGATGAA 8872 Query 76031 ACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGT--CAATGAA-GAGACT 76087 ||| || || ||||| || || || || |||| | ||| ||||| ||| Sbjct 8871 GTCGCTTGCTGTAACTTGGCTTCCATTGCTCTCCCAACATTTGTGGACATGAATGAG--- 8815 Query 76088 CGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAAC 76147 | |||| |||| |||| ||||| || | || | | ||| || ||| | ||| Sbjct 8814 GGAACTTACGATTTCCAAAAGCTTCACGAGGTTACTCAAGTCGTTGTCAGAAACTTGAAC 8755 Query 76148 CGAGTCATTGACAGAAATTTTTATCCCGT-TGAGACTGCGCGAAAGTCTAATATGCGACA 76206 ||||||||| || | || ||||| ||| || ||||| ||| | || || Sbjct 8754 AAGATCATTGACATCAACTACTACCCCGTCCCAGA-GGCCAGAAAGAGCAATTTCCGTCA 8696 Query 76207 CAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATT--TTGTGCCGCTAC 76264 ||||||| | | | |||||||||||||| || |||| ||| || | | | ||| Sbjct 8695 TCGACCTATCGCTGTCGGTGTTCAAGGTCTTGCCGATG-CTTTCTTGGCTCTTCGATTAC 8637 Query 76265 GCATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCAC 76324 ||||||| ||| |||||||||| | | || || ||||| ||||| || || ||| Sbjct 8636 -CATTTGAATCACCTGAAGCCAAGCACCTCAACATTCAAATCTTCGAAACTATTTACCAC 8578 Query 76325 GCATCCCTGGAGGCG--AGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTG 76382 || | || || |||| || | ||| | | ||| |||||||||| | | Sbjct 8577 GCTGCTTTGACATCGTCCGTTGAGA--TTGCTAAGGAGTTGGGTACCTATGAGACTTACG 8520 Query 76383 AGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGC 76442 | || || || | || | || | ||||| | |||||||||| | || | ||| | | Sbjct 8519 AAGGCTCACCTGTCTCGAAGGGCGAACTTCAATACGATATGTGGGGA-GTTACACCTACC 8461 Query 76443 -TCAACTACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGT 76501 | | ||||||||| | ||| || |||||| | | ||| | || |||||| Sbjct 8460 GACCTTTGGGACTGGGATAGCTTGAAGAAATCCATCAAACAACACGGTGTCCGCAACAGT 8401 Query 76502 CTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGC 76561 | | | || || |||||||||||| |||| | ||||| | ||| || || ||| Sbjct 8400 TTGCTCGTTGCTCCTATGCCAACAGCCAGCACCTCTCAAATTCTCGGTTTCAACGAGTGC 8341 Query 76562 TTTGAACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATT 76621 |||||||||||||| | ||||||||| | | | | || || || || || Sbjct 8340 TTTGAACCATACACTTCTAACATCTACTCTCGTCGTGTCTTGGCTGGAGAATTCCAAGTT 8281 Query 76622 GTCAACAAGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAG 76681 || ||| || |||| || || | || || | ||||| | | |||||| Sbjct 8280 GTTAACCCATGGCTGCTCAAGGATCTTGTCGACATGGGATTATGGTCAGACAACATGAAG 8221 Query 76682 GATCTCATGGTGAAAGCGGGTGGTTCCATTCAAAATATCTCAGATATCCCAGATGATATC 76741 | | ||| | | |||||||| |||||||| || | | || |||| ||| ||| Sbjct 8220 AACCGCATCATCGCTGACGGTGGTTCTATTCAAAACATTCCCAACATTCCAGCTGACATC 8161 Query 76742 AAGAATCTCTACCGCACAGTGTGGGAAA--TCAAGATGAAAGATGTCATTGACATGGCCG 76799 ||| || ||| || || ||||| | || | ||| | | || | ||||||| Sbjct 8160 AAGGCACTTTACAAGACCGTCTGGGAGATTTCTCAACGAACAA--TTGTTCAAATGGCCG 8103 Query 76800 CAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGT--ATGAATCTATTCATGGAAAGTCC 76857 | ||||||||| ||| |||| | ||||| | | ||||| | |||| || || Sbjct 8102 CTGATCGTGGTGCCTTTGTTGACC--AGTCACAATCAATGAACATTCACATGAAAGACCC 8045 Query 76858 AACGATGTCCAAGCTCTCTTCTATGCATATGTACGCGTGGAAACAGGGGCTCAAAACCGG 76917 || ||| |||| | |||| |||||| | || |||||| ||| ||||| ||||| Sbjct 8044 CACAATGGGCAAGATTACTTCCATGCATTTCGCCGGTTGGAAATTGGGTCTCAAGACCGG 7985 Query 76918 AATGTACTATCTCCGATCAAAGGCGAAAGCCCGACCAATTCAGTTCA 76964 ||||||||| ||||| | | ||| | || ||| |||||||||| Sbjct 7984 AATGTACTACCTCCGTACCATGGCCGCATCCGCACCTATTCAGTTCA 7938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596542679796800