Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08-
07] 3,610 sequences; 36,184,363 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq60 246 4e-60
>seq60
Length=14677
Score = 246 bits (272), Expect = 4e-60
Identities = 1179/1847 (64%), Gaps = 53/1847 (3%)
Strand=Plus/Minus
Query 75146 TACTTTGGTCTCAAAACCCTTGAGAAGAGC-TATCTTCAACGGCTCGATGGCATCCTCAT 75204
||||| || |||| ||||| ||| || | || |||| || |||||||| | |
Sbjct 9759 TACTTCGGATTCAAGACCCTCGAGC-GATCGTACCTTCTTCGACTCGATGGAAAAGTTGC 9701
Query 75205 GGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGA 75264
||| ||||| | ||| ||||||| || || | || || ||||| || || || ||
Sbjct 9700 AGAACGTCCACAACAAATGATCATGCGTGTTGCCGTTGGTATTCACGGTGACGATATCGA 9641
Query 75265 TTCTGTCTTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAA 75323
| | | ||||| ||| || |||||| | | || |||| ||||| | || |
Sbjct 9640 GAGCGCCATTGAGACCTACAACCTTATGTCCAACAAATAC-TTCACACACGCCTCCCCTA 9582
Query 75324 CCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACA 75383
| || ||| |||||||||||| | | ||| | || |||||||| || | | |
Sbjct 9581 CACTTTTCTCCGCTGGTACACCACAAGCTCAGCTTTCATCATGCTTCCTCATTGATATGA 9522
Query 75384 AGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGT 75443
|||||||| || | ||||| |||| || || | | ||||| ||||| ||
Sbjct 9521 AGGAGGACAGTATTGATGGTATTTATGATACCCTCAAGACATGTGCTATGATCTCTAAAA 9462
Query 75444 GGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGG 75503
||||| |||||||| | |||| || | | |||| | | || |
Sbjct 9461 ATGCTGGAGGTATTGGTCTCAACATTCACAGAATCCGTGCCACTGGTGCATACATCGCCG 9402
Query 75504 GGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGC 75563
| || || ||| | || | || || | || ||||| || || || ||| ||| ||
Sbjct 9401 GTACCAACGGTAACTCCAACGGCATCGTACCCATGCTACGAGTTTTCAACAACACTGCTA 9342
Query 75564 GCTATGTAAATCAAGCGGG------GCGTCGCAAGGGGTCCATC-GCGGTCTACTTGGAA 75616
| || || | |||| || ||||| ||| ||| || ||||| | ||
Sbjct 9341 GATACGTCGACCAAGGTGGAAACAAGCGTCCT----GGTGCATTTGCAGTCTATCTTGAG 9286
Query 75617 CCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAG 75676
|| ||||| || ||| | | |||||||| || | ||| ||||| || | |||||
Sbjct 9285 CCTTGGCACGCAGATGTTTTCGAGTTCCTGGACCTTCGAAAGAACCATGGCAAGGAAGAA 9226
Query 75677 GCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTT 75736
| || | ||||| || | || |||||||||| || || ||||||||||| |||
Sbjct 9225 GTCCGCGCCCGTGATCTTTTCTATGCCTTGTGGATTCCGGATCTCTTCATGAAGCGTGTT 9166
Query 75737 GAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCA---CCAGGTCTCTCCGAC 75793
|| || | | ||| | || | || || ||| | | || || | | ||
Sbjct 9165 GAAAAGAACGCGGATTGGACACTAATGTGCCC---CAATGAATGTCCTGGGTTGGCTGAT 9109
Query 75794 GCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGC---C 75850
| || || ||||||||||| ||||| | ||||| |||| ||||||| |
Sbjct 9108 GTATATGGCGACGAGTTTGAAGCTCTCTATGAGAGTTATGAGAAGGAAGGTAGAGGTCGC 9049
Query 75851 AATGCGACTGTACCAGCCGCCGATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACT 75910
|| ||| | |||| | ||||| | | |||||| | | || || |||||
Sbjct 9048 AA---GACCATCAAAGCCCAAAAGCTTTGGTACTCCATTCTCGAGGCTCAAACCGAGACC 8992
Query 75911 GGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTG 75970
|||| |||| ||||||||||||||||| || ||||||||||| ||||||||||| |
Sbjct 8991 GGAAATCCATTCATGCTTTACAAGGATGCATGCAACAAGAAGAGCAACCAAAAGAACCTC 8932
Query 75971 GGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAG 76030
|| || || ||||| ||| | ||||| |||||| | || ||| | | |||||
Sbjct 8931 GGCACCATTCGCAGCTCCAATTTGTGCACAGAAATTGTCGAATACTCTGCCCCAGATGAA 8872
Query 76031 ACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGT--CAATGAA-GAGACT 76087
||| || || ||||| || || || || |||| | ||| ||||| |||
Sbjct 8871 GTCGCTTGCTGTAACTTGGCTTCCATTGCTCTCCCAACATTTGTGGACATGAATGAG--- 8815
Query 76088 CGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAAC 76147
| |||| |||| |||| ||||| || | || | | ||| || ||| | |||
Sbjct 8814 GGAACTTACGATTTCCAAAAGCTTCACGAGGTTACTCAAGTCGTTGTCAGAAACTTGAAC 8755
Query 76148 CGAGTCATTGACAGAAATTTTTATCCCGT-TGAGACTGCGCGAAAGTCTAATATGCGACA 76206
||||||||| || | || ||||| ||| || ||||| ||| | || ||
Sbjct 8754 AAGATCATTGACATCAACTACTACCCCGTCCCAGA-GGCCAGAAAGAGCAATTTCCGTCA 8696
Query 76207 CAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATT--TTGTGCCGCTAC 76264
||||||| | | | |||||||||||||| || |||| ||| || | | | |||
Sbjct 8695 TCGACCTATCGCTGTCGGTGTTCAAGGTCTTGCCGATG-CTTTCTTGGCTCTTCGATTAC 8637
Query 76265 GCATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCAC 76324
||||||| ||| |||||||||| | | || || ||||| ||||| || || |||
Sbjct 8636 -CATTTGAATCACCTGAAGCCAAGCACCTCAACATTCAAATCTTCGAAACTATTTACCAC 8578
Query 76325 GCATCCCTGGAGGCG--AGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTG 76382
|| | || || |||| || | ||| | | ||| |||||||||| | |
Sbjct 8577 GCTGCTTTGACATCGTCCGTTGAGA--TTGCTAAGGAGTTGGGTACCTATGAGACTTACG 8520
Query 76383 AGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGC 76442
| || || || | || | || | ||||| | |||||||||| | || | ||| | |
Sbjct 8519 AAGGCTCACCTGTCTCGAAGGGCGAACTTCAATACGATATGTGGGGA-GTTACACCTACC 8461
Query 76443 -TCAACTACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGT 76501
| | ||||||||| | ||| || |||||| | | ||| | || ||||||
Sbjct 8460 GACCTTTGGGACTGGGATAGCTTGAAGAAATCCATCAAACAACACGGTGTCCGCAACAGT 8401
Query 76502 CTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGC 76561
| | | || || |||||||||||| |||| | ||||| | ||| || || |||
Sbjct 8400 TTGCTCGTTGCTCCTATGCCAACAGCCAGCACCTCTCAAATTCTCGGTTTCAACGAGTGC 8341
Query 76562 TTTGAACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATT 76621
|||||||||||||| | ||||||||| | | | | || || || || ||
Sbjct 8340 TTTGAACCATACACTTCTAACATCTACTCTCGTCGTGTCTTGGCTGGAGAATTCCAAGTT 8281
Query 76622 GTCAACAAGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAG 76681
|| ||| || |||| || || | || || | ||||| | | ||||||
Sbjct 8280 GTTAACCCATGGCTGCTCAAGGATCTTGTCGACATGGGATTATGGTCAGACAACATGAAG 8221
Query 76682 GATCTCATGGTGAAAGCGGGTGGTTCCATTCAAAATATCTCAGATATCCCAGATGATATC 76741
| | ||| | | |||||||| |||||||| || | | || |||| ||| |||
Sbjct 8220 AACCGCATCATCGCTGACGGTGGTTCTATTCAAAACATTCCCAACATTCCAGCTGACATC 8161
Query 76742 AAGAATCTCTACCGCACAGTGTGGGAAA--TCAAGATGAAAGATGTCATTGACATGGCCG 76799
||| || ||| || || ||||| | || | ||| | | || | |||||||
Sbjct 8160 AAGGCACTTTACAAGACCGTCTGGGAGATTTCTCAACGAACAA--TTGTTCAAATGGCCG 8103
Query 76800 CAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGT--ATGAATCTATTCATGGAAAGTCC 76857
| ||||||||| ||| |||| | ||||| | | ||||| | |||| || ||
Sbjct 8102 CTGATCGTGGTGCCTTTGTTGACC--AGTCACAATCAATGAACATTCACATGAAAGACCC 8045
Query 76858 AACGATGTCCAAGCTCTCTTCTATGCATATGTACGCGTGGAAACAGGGGCTCAAAACCGG 76917
|| ||| |||| | |||| |||||| | || |||||| ||| ||||| |||||
Sbjct 8044 CACAATGGGCAAGATTACTTCCATGCATTTCGCCGGTTGGAAATTGGGTCTCAAGACCGG 7985
Query 76918 AATGTACTATCTCCGATCAAAGGCGAAAGCCCGACCAATTCAGTTCA 76964
||||||||| ||||| | | ||| | || ||| ||||||||||
Sbjct 7984 AATGTACTACCTCCGTACCATGGCCGCATCCGCACCTATTCAGTTCA 7938
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596542679796800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |