Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08- 07] 3,610 sequences; 36,184,363 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq3070 86.0 9e-12 >seq3070 Length=35956 Score = 86.0 bits (94), Expect = 9e-12 Identities = 191/286 (67%), Gaps = 3/286 (1%) Strand=Plus/Plus Query 18422 TCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATGCTTTCCATAGCT 18481 || || || || || ||||| | | ||| || |||| || || || | ||||| Sbjct 29128 TCCTTAATGTATGTATCGATGAGGAGAGAGTATGTTTCGGAGTGGATATTCTCCATCATA 29187 Query 18482 ATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGAATCTCGCTATAAAATCTTTCT 18541 || || |||| || || | | ||||||||| ||||| || | | || | || Sbjct 29188 ATTTGGAAACCGTAGAAGCAACGAGCCTCGGGGATTTGAACTTCACCACTGAAGCGCTCG 29247 Query 18542 ACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCAAAACATATTTAATG 18601 || | ||||| || ||||| ||||| | | |||||| ||||| | || | ||| Sbjct 29248 ACAAGGTTCTCGTTGACTATTCCGTCGGATGCTGCGAAGAATGCGAGGACGTGAGAGATG 29307 Query 18602 AAATGTTTTTCATTATCCTTGAGATTGTT---CCATTCATCTATATCTTTTGATAGATCA 18658 |||| |||| ||| ||||| ||||| ||| || | | || ||||| | || Sbjct 29308 AAATAGCGCTCATCATCATTGAGTTTGTTATTCCAATCGTGAAGGTCCTTTGACAAGTCG 29367 Query 18659 ACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTGTTTGTACATTT 18704 | ||||| | |||||| ||||||| ||||||| ||||||||||| Sbjct 29368 ATCTCTTCTGCTGTCCAGAAAGATGCCTCGGCCTTTTTGTACATTT 29413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731838974276000