Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08-
07] 3,610 sequences; 36,184,363 total letters
Query= NC_021247.1
Length=228750
Score E
Sequences producing significant alignments: (Bits) Value
seq3070 86.0 9e-12
>seq3070
Length=35956
Score = 86.0 bits (94), Expect = 9e-12
Identities = 191/286 (67%), Gaps = 3/286 (1%)
Strand=Plus/Plus
Query 18422 TCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATGCTTTCCATAGCT 18481
|| || || || || ||||| | | ||| || |||| || || || | |||||
Sbjct 29128 TCCTTAATGTATGTATCGATGAGGAGAGAGTATGTTTCGGAGTGGATATTCTCCATCATA 29187
Query 18482 ATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGAATCTCGCTATAAAATCTTTCT 18541
|| || |||| || || | | ||||||||| ||||| || | | || | ||
Sbjct 29188 ATTTGGAAACCGTAGAAGCAACGAGCCTCGGGGATTTGAACTTCACCACTGAAGCGCTCG 29247
Query 18542 ACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCAAAACATATTTAATG 18601
|| | ||||| || ||||| ||||| | | |||||| ||||| | || | |||
Sbjct 29248 ACAAGGTTCTCGTTGACTATTCCGTCGGATGCTGCGAAGAATGCGAGGACGTGAGAGATG 29307
Query 18602 AAATGTTTTTCATTATCCTTGAGATTGTT---CCATTCATCTATATCTTTTGATAGATCA 18658
|||| |||| ||| ||||| ||||| ||| || | | || ||||| | ||
Sbjct 29308 AAATAGCGCTCATCATCATTGAGTTTGTTATTCCAATCGTGAAGGTCCTTTGACAAGTCG 29367
Query 18659 ACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTGTTTGTACATTT 18704
| ||||| | |||||| ||||||| ||||||| |||||||||||
Sbjct 29368 ATCTCTTCTGCTGTCCAGAAAGATGCCTCGGCCTTTTTGTACATTT 29413
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 731838974276000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |