Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08- 07] 3,610 sequences; 36,184,363 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq443 118 2e-21 >seq443 Length=6205 Score = 118 bits (130), Expect = 2e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 ||| || | ||| || | || || || ||||| ||| || ||| || ||||| || Sbjct 2873 ACCGCCACGAAGACGAAGCACCAAGTGCAAAGTGCTCTCCTTCTGAATGTTGTAATCAGA 2932 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 | || || | || ||||| || || |||||||| || |||| ||||||||| ||||| Sbjct 2933 AAGAGTTCTGCCATCCTCCAACTGCTTTCCAGCAAAGATCAATCGCTGTTGGTCCGGTGG 2992 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 || || || || ||||| || || || ||||| || |||||||||||||| || Sbjct 2993 AATACCCTCCTTGTCTTGAATCTTTGACTTGACATTGTCAATGGTATCTGACGATTCCAC 3052 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||| | |||||||| || || || || || || | ||| |||||||| Sbjct 3053 TTCCAATGTAATGGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCAT 3100 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | || || | || ||||| | || | |||||| || || || ||| Sbjct 3099 ATACCACCACGGAGACGAAGGACCAAATGCAGTGTGGACTCTTTCTGGATGTTGTAGTCT 3158 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 |||| || || | || || | ||| ||||||||||| || | | || ||||| ||| Sbjct 3159 GATAGAGTGCGGCCATCCTCAAGTTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGT 3218 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || |||||||| || || ||| || || || ||||||||||| || Sbjct 3219 GGGATACCCTCCTTATCTTGAATCTTTGATTTCACGTTGTCGATGGTATCTGACGACTCA 3278 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | || || || || || || | ||| || | ||| || ||||| Sbjct 3279 ACCTCCAATGTGATTGTCTTTCCGGTAAGTGTCTTCACGAAGATTTGCAT 3328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905095155738000