Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08- 07] 3,610 sequences; 36,184,363 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq60 156 1e-32 seq3070 113 1e-19 seq3154 100 8e-16 seq1332 100 8e-16 seq41 86.0 2e-11 >seq60 Length=14677 Score = 156 bits (172), Expect = 1e-32 Identities = 570/880 (65%), Gaps = 17/880 (2%) Strand=Plus/Plus Query 155630 GTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTT 155689 |||||| ||||| || ||||| || || || |||||||| | ||||| ||||| Sbjct 8887 GTATTCGACAATTTCTGTGCACAAATTGGAGCTGCGAATGGTGCCGAGGTTCTTTTGGTT 8946 Query 155690 AGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGC 155749 || |||| || ||||||||||| || ||| |||| |||| ||||| | || || Sbjct 8947 GCTCTTCTTGTTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGTCTCGGTTTGAGC 9006 Query 155750 GTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGA 155809 || ||||| ||| || | |||| || || |||| ||| |||||| Sbjct 9007 CTCGAGAATGGAGTACCAAAGCTTTTGGGCTTTGATGGTCTTGCGACCTCTACCTTCCTT 9066 Query 155810 CTCATA--TTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGG 155867 |||||| | ||||| | ||| ||| | || || || || |||| || ||||| Sbjct 9067 CTCATAACTCTCATAGAGAGC-TTC-AAACTCGTCGCCATATACATCAGCCAACCCAGGA 9124 Query 155868 CACTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATT--ACACGCTCCATAAATA 155925 || | || |||||| | || | |||| || | || ||||||| ||| || | Sbjct 9125 CATTCATTGGGGCACATTAGTGTCCAATCCGCGTT--CTTTTCAACACGCTTCATGAAGA 9182 Query 155926 CATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGAC-TCCTCATCGCCGTGA 155984 ||| ||| | ||||||||||| || | | | ||| || || | ||| || Sbjct 9183 GATCCGGAATCCACAAGGCATAGAAAAGATCAC-GGGCGCGGACTTCTTCCTTGCCATGG 9241 Query 155985 TTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCA 156044 ||||| || || || | ||| || || ||| | || ||||| ||||| | ||| Sbjct 9242 TTCTTTCGAAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGACTGCA 9301 Query 156045 AAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACA 156101 || |||| | |||| ||||| || || || || | |||||| || ||||| || Sbjct 9302 AATGCACCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTGTTGAAAACT 9361 Query 156102 CCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCC-GCGA-ATATGCGAACCAG 156159 | |||||| || | || || ||||| | || ||||| || |||| ||||| ||||| Sbjct 9362 CGTAGCATGGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATGC--ACCAG 9419 Query 156160 ATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGC 156219 | || | | ||||| | || |||||||| || | |||||| || ||| | Sbjct 9420 TGGCACGGATTCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATCATAGCAC 9479 Query 156220 ATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGC 156279 || ||| | |||| ||||||| |||||| || || | ||| | || ||| Sbjct 9480 ATGTCTTGAGGGTATCATAAATACCATCAATACTGTCCTCCTTCATATCAATGAGGAAGC 9539 Query 156280 ACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAA 156339 | || | |||| | ||||||| |||||| ||| |||||||| | || || | | Sbjct 9540 ATGATGAAAGCTGAGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGTGTGA 9599 Query 156340 AATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAA 156399 | || || || |||||| | ||| ||||| | |||| | || ||||||| Sbjct 9600 AGTATTTGTTGGACATAAGGTTGTAGGTCTCAATGGCGCTCTCGATATCGTCACCGTGAA 9659 Query 156400 TACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTC 156459 ||| | | || | ||| ||| || || ||||| ||| ||| |||||| | || Sbjct 9660 TACCAACGGCAACACGCATGATCATTTGTTGTGGACGTTCTGCAACTTTTCCATCGAGTC 9719 Query 156460 GCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATA 156499 | |||||||| | || || || || || || ||||| || Sbjct 9720 GAAGAAGGTACGATCGCTCGAGGGTCTTGAATCCGAAGTA 9759 >seq3070 Length=35956 Score = 113 bits (124), Expect = 1e-19 Identities = 157/220 (71%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 133437 TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGA 133496 ||||||| ||||| |||||| | ||||||||| | | |||||| || ||||| | | Sbjct 29033 TTCCTTGCATTAAGAAGAAAGCCGACTGGGCTGTCAGATGGATTCAAGACAAAAACTCTA 28974 Query 133497 GTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGT 133556 |||||| ||||| ||||||||||||| || |||||||| || |||||||| | | Sbjct 28973 CCTTTGCTCAGCGTCTGGTTGCTTTTGCTGCTGTTGAGGGCATCTTCTTCAGTGGATCAT 28914 Query 133557 TCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACG 133616 || ||||| || ||||| || |||||||| | | |||| || ||| || || | Sbjct 28913 TCGCTTCTATCTTCTGGCTCAAGAAGCGTGGCTTGATGGCTGGTCTCACTTTCTCCAATG 28854 Query 133617 AACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGC 133656 | || || || | || || | || || ||||| || || Sbjct 28853 AGCTCATCTCCCGTGATGAAGGTCTCCATACCGACTTCGC 28814 >seq3154 Length=42454 Score = 100 bits (110), Expect = 8e-16 Identities = 115/152 (76%), Gaps = 6/152 (4%) Strand=Plus/Minus Query 251839 TGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGT 251898 || || |||||||||||| |||||||| || || || ||||| | |||||| | Sbjct 26446 TGTGCAATAGTCATACGAGAAGGAATAGCGTGCGGGTTAATGATAAGGTCGGGAACAATG 26387 Query 251899 CCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATA-ATGT--TTCCAATAGTTCCCTTT 251955 || | | |||||| ||||| |||| || | ||| |||| | || ||||||||||| Sbjct 26386 CCTTGACTAGTGAATGGCATGTCCTGTTGC---ATATATGTGATACCGATAGTTCCCTTC 26330 Query 251956 TGTCCGTGACGAGAACTGAACTTATCACCAAT 251987 ||||||||||||||| |||||||||||||| Sbjct 26329 TGTCCGTGACGAGAAGCAAACTTATCACCAAT 26298 Score = 84.2 bits (92), Expect = 6e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGA 251466 || || ||||| ||| ||| | ||||| || | ||||| ||| | ||| |||| | Sbjct 26878 ATGAGCCCACAGATATCACATATGTGGACTCTAAAGGCATCCGATACCTCAAATAGTCTC 26819 Query 251467 CCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAA 251526 | || ||| | |||||| || || |||||||||||||||||||| ||||||||| Sbjct 26818 TCTTTCAAGAATGCACTTGCACCATGCGAGATCATACAATCACGCTCCATCTCACCGAAA 26759 Query 251527 CGAAGACCACCATCGCGAGCCCTACCCTC 251555 || | |||||||| | ||| | ||| || Sbjct 26758 CGCAAGCCACCATCTCTAGCACGACCTTC 26730 >seq1332 Length=31114 Score = 100 bits (110), Expect = 8e-16 Identities = 140/193 (73%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 289027 TTACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATT 289086 || |||||||| |||||||| ||||||||||| | ||| |||| | | | ||| || | Sbjct 23699 TTTCCAACAGCGTCAATTTCATCAATGAAAATGATACATGGAGTACTCTTTCTTGCCGTG 23640 Query 289087 GCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAA 289146 || || | || | || | ||||||||||| ||| || ||||||| || ||||| ||| Sbjct 23639 GCGAAAAGATCACGGACTCTGGATGCTCCAACACCTACGAACATTTCGACGAATTCCGAA 23580 Query 289147 --GCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTG 289204 | || || |||| ||||| || | | ||||| ||| |||| | |||||||| | Sbjct 23579 CCACTGACAC-TGAA-GAATGGCACCTGGGACTCGCCAGCTGTTGCCTTTGCCAGAAGCG 23522 Query 289205 TCTTACCTGTTCC 289217 | ||||| || || Sbjct 23521 TTTTACCGGTACC 23509 >seq41 Length=27402 Score = 86.0 bits (94), Expect = 2e-11 Identities = 167/247 (68%), Gaps = 0/247 (0%) Strand=Plus/Plus Query 302572 TCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCT 302631 ||||| | | ||||| | |||||| ||||| ||||||||| | || || || || Sbjct 16683 TCTTCAAGAGCCTTGACAAGACGACGTTGAATGTAACCAGTTTCTGCGGTCTTGACTGCA 16742 Query 302632 GTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGC 302691 ||||| || | ||| |||||||| |||| || |||||||| | || || || Sbjct 16743 GTATCGATCAAACCTTCACGACCAGCCATGGCGTGGAAGAAGAATTCAGTGGGGGTAAGA 16802 Query 302692 CCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTA 302751 || | || | | || ||||||||||||| | || || || || | || ||| || Sbjct 16803 CCTCTAAGATATGAATTCTCAACGAAACCTCTCGATTCAGGAGAGTAATCATCCTTAGTG 16862 Query 302752 AAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGC 302811 || || || | || |||| | | ||| | ||||||||||| || || || |||| Sbjct 16863 AAATGCGGTAAAGTTCTGTATTTGAAACCGAACGGGATACGCTTACCCTCGACAGACTGC 16922 Query 302812 TGTCCCA 302818 || |||| Sbjct 16923 TGACCCA 16929 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471749523836570