Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08-
07] 3,610 sequences; 36,184,363 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq60 156 1e-32
seq3070 113 1e-19
seq3154 100 8e-16
seq1332 100 8e-16
seq41 86.0 2e-11
>seq60
Length=14677
Score = 156 bits (172), Expect = 1e-32
Identities = 570/880 (65%), Gaps = 17/880 (2%)
Strand=Plus/Plus
Query 155630 GTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTT 155689
|||||| ||||| || ||||| || || || |||||||| | ||||| |||||
Sbjct 8887 GTATTCGACAATTTCTGTGCACAAATTGGAGCTGCGAATGGTGCCGAGGTTCTTTTGGTT 8946
Query 155690 AGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGC 155749
|| |||| || ||||||||||| || ||| |||| |||| ||||| | || ||
Sbjct 8947 GCTCTTCTTGTTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGTCTCGGTTTGAGC 9006
Query 155750 GTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGA 155809
|| ||||| ||| || | |||| || || |||| ||| ||||||
Sbjct 9007 CTCGAGAATGGAGTACCAAAGCTTTTGGGCTTTGATGGTCTTGCGACCTCTACCTTCCTT 9066
Query 155810 CTCATA--TTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGG 155867
|||||| | ||||| | ||| ||| | || || || || |||| || |||||
Sbjct 9067 CTCATAACTCTCATAGAGAGC-TTC-AAACTCGTCGCCATATACATCAGCCAACCCAGGA 9124
Query 155868 CACTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATT--ACACGCTCCATAAATA 155925
|| | || |||||| | || | |||| || | || ||||||| ||| || |
Sbjct 9125 CATTCATTGGGGCACATTAGTGTCCAATCCGCGTT--CTTTTCAACACGCTTCATGAAGA 9182
Query 155926 CATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGAC-TCCTCATCGCCGTGA 155984
||| ||| | ||||||||||| || | | | ||| || || | ||| ||
Sbjct 9183 GATCCGGAATCCACAAGGCATAGAAAAGATCAC-GGGCGCGGACTTCTTCCTTGCCATGG 9241
Query 155985 TTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCA 156044
||||| || || || | ||| || || ||| | || ||||| ||||| | |||
Sbjct 9242 TTCTTTCGAAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGACTGCA 9301
Query 156045 AAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACA 156101
|| |||| | |||| ||||| || || || || | |||||| || ||||| ||
Sbjct 9302 AATGCACCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTGTTGAAAACT 9361
Query 156102 CCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCC-GCGA-ATATGCGAACCAG 156159
| |||||| || | || || ||||| | || ||||| || |||| ||||| |||||
Sbjct 9362 CGTAGCATGGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATGC--ACCAG 9419
Query 156160 ATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGC 156219
| || | | ||||| | || |||||||| || | |||||| || ||| |
Sbjct 9420 TGGCACGGATTCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATCATAGCAC 9479
Query 156220 ATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGC 156279
|| ||| | |||| ||||||| |||||| || || | ||| | || |||
Sbjct 9480 ATGTCTTGAGGGTATCATAAATACCATCAATACTGTCCTCCTTCATATCAATGAGGAAGC 9539
Query 156280 ACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAA 156339
| || | |||| | ||||||| |||||| ||| |||||||| | || || | |
Sbjct 9540 ATGATGAAAGCTGAGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGTGTGA 9599
Query 156340 AATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAA 156399
| || || || |||||| | ||| ||||| | |||| | || |||||||
Sbjct 9600 AGTATTTGTTGGACATAAGGTTGTAGGTCTCAATGGCGCTCTCGATATCGTCACCGTGAA 9659
Query 156400 TACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTC 156459
||| | | || | ||| ||| || || ||||| ||| ||| |||||| | ||
Sbjct 9660 TACCAACGGCAACACGCATGATCATTTGTTGTGGACGTTCTGCAACTTTTCCATCGAGTC 9719
Query 156460 GCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATA 156499
| |||||||| | || || || || || || ||||| ||
Sbjct 9720 GAAGAAGGTACGATCGCTCGAGGGTCTTGAATCCGAAGTA 9759
>seq3070
Length=35956
Score = 113 bits (124), Expect = 1e-19
Identities = 157/220 (71%), Gaps = 0/220 (0%)
Strand=Plus/Minus
Query 133437 TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGA 133496
||||||| ||||| |||||| | ||||||||| | | |||||| || ||||| | |
Sbjct 29033 TTCCTTGCATTAAGAAGAAAGCCGACTGGGCTGTCAGATGGATTCAAGACAAAAACTCTA 28974
Query 133497 GTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGT 133556
|||||| ||||| ||||||||||||| || |||||||| || |||||||| | |
Sbjct 28973 CCTTTGCTCAGCGTCTGGTTGCTTTTGCTGCTGTTGAGGGCATCTTCTTCAGTGGATCAT 28914
Query 133557 TCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACG 133616
|| ||||| || ||||| || |||||||| | | |||| || ||| || || |
Sbjct 28913 TCGCTTCTATCTTCTGGCTCAAGAAGCGTGGCTTGATGGCTGGTCTCACTTTCTCCAATG 28854
Query 133617 AACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGC 133656
| || || || | || || | || || ||||| || ||
Sbjct 28853 AGCTCATCTCCCGTGATGAAGGTCTCCATACCGACTTCGC 28814
>seq3154
Length=42454
Score = 100 bits (110), Expect = 8e-16
Identities = 115/152 (76%), Gaps = 6/152 (4%)
Strand=Plus/Minus
Query 251839 TGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGT 251898
|| || |||||||||||| |||||||| || || || ||||| | |||||| |
Sbjct 26446 TGTGCAATAGTCATACGAGAAGGAATAGCGTGCGGGTTAATGATAAGGTCGGGAACAATG 26387
Query 251899 CCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATA-ATGT--TTCCAATAGTTCCCTTT 251955
|| | | |||||| ||||| |||| || | ||| |||| | || |||||||||||
Sbjct 26386 CCTTGACTAGTGAATGGCATGTCCTGTTGC---ATATATGTGATACCGATAGTTCCCTTC 26330
Query 251956 TGTCCGTGACGAGAACTGAACTTATCACCAAT 251987
||||||||||||||| ||||||||||||||
Sbjct 26329 TGTCCGTGACGAGAAGCAAACTTATCACCAAT 26298
Score = 84.2 bits (92), Expect = 6e-11
Identities = 108/149 (72%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGA 251466
|| || ||||| ||| ||| | ||||| || | ||||| ||| | ||| |||| |
Sbjct 26878 ATGAGCCCACAGATATCACATATGTGGACTCTAAAGGCATCCGATACCTCAAATAGTCTC 26819
Query 251467 CCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAA 251526
| || ||| | |||||| || || |||||||||||||||||||| |||||||||
Sbjct 26818 TCTTTCAAGAATGCACTTGCACCATGCGAGATCATACAATCACGCTCCATCTCACCGAAA 26759
Query 251527 CGAAGACCACCATCGCGAGCCCTACCCTC 251555
|| | |||||||| | ||| | ||| ||
Sbjct 26758 CGCAAGCCACCATCTCTAGCACGACCTTC 26730
>seq1332
Length=31114
Score = 100 bits (110), Expect = 8e-16
Identities = 140/193 (73%), Gaps = 4/193 (2%)
Strand=Plus/Minus
Query 289027 TTACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATT 289086
|| |||||||| |||||||| ||||||||||| | ||| |||| | | | ||| || |
Sbjct 23699 TTTCCAACAGCGTCAATTTCATCAATGAAAATGATACATGGAGTACTCTTTCTTGCCGTG 23640
Query 289087 GCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAA 289146
|| || | || | || | ||||||||||| ||| || ||||||| || ||||| |||
Sbjct 23639 GCGAAAAGATCACGGACTCTGGATGCTCCAACACCTACGAACATTTCGACGAATTCCGAA 23580
Query 289147 --GCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTG 289204
| || || |||| ||||| || | | ||||| ||| |||| | |||||||| |
Sbjct 23579 CCACTGACAC-TGAA-GAATGGCACCTGGGACTCGCCAGCTGTTGCCTTTGCCAGAAGCG 23522
Query 289205 TCTTACCTGTTCC 289217
| ||||| || ||
Sbjct 23521 TTTTACCGGTACC 23509
>seq41
Length=27402
Score = 86.0 bits (94), Expect = 2e-11
Identities = 167/247 (68%), Gaps = 0/247 (0%)
Strand=Plus/Plus
Query 302572 TCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCT 302631
||||| | | ||||| | |||||| ||||| ||||||||| | || || || ||
Sbjct 16683 TCTTCAAGAGCCTTGACAAGACGACGTTGAATGTAACCAGTTTCTGCGGTCTTGACTGCA 16742
Query 302632 GTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGC 302691
||||| || | ||| |||||||| |||| || |||||||| | || || ||
Sbjct 16743 GTATCGATCAAACCTTCACGACCAGCCATGGCGTGGAAGAAGAATTCAGTGGGGGTAAGA 16802
Query 302692 CCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTA 302751
|| | || | | || ||||||||||||| | || || || || | || ||| ||
Sbjct 16803 CCTCTAAGATATGAATTCTCAACGAAACCTCTCGATTCAGGAGAGTAATCATCCTTAGTG 16862
Query 302752 AAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGC 302811
|| || || | || |||| | | ||| | ||||||||||| || || || ||||
Sbjct 16863 AAATGCGGTAAAGTTCTGTATTTGAAACCGAACGGGATACGCTTACCCTCGACAGACTGC 16922
Query 302812 TGTCCCA 302818
|| ||||
Sbjct 16923 TGACCCA 16929
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471749523836570
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |