Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08- 07] 3,610 sequences; 36,184,363 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq1302 131 2e-24 seq58 111 2e-18 seq3070 96.9 4e-14 >seq1302 Length=13363 Score = 131 bits (144), Expect = 2e-24 Identities = 129/164 (79%), Gaps = 2/164 (1%) Strand=Plus/Plus Query 1592131 GTGGGACAAGGAGTTT-TGCGACGTCGAGCAGCCCACCCTCTTTGAGTTGATCCTCGCCG 1592189 ||||||| | |||| ||| | ||||| ||| | |||| |||| | || || || | Sbjct 7733 GTGGGACCAAATGTTTATGCAA-GTCGACCAGGATATGCTCTATGAGCTCATTCTGGCTG 7791 Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249 | ||||||||| |||||||| |||| ||||||||||| |||||| |||| ||||| |||| Sbjct 7792 CTAACTACCTCAACATCAAGGCTCTTCTCGATCTTGGCTGCAAGACTGTTGCCAATATGA 7851 Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATC 1592293 |||| |||||||| || || || ||||| ||||| || |||||| Sbjct 7852 TCAAAGGCAAGTCTCCAGAAGAAATCCGAAAGACATTCAACATC 7895 >seq58 Length=22670 Score = 111 bits (122), Expect = 2e-18 Identities = 90/109 (83%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || |||||||||||||| ||||| |||| ||||| | || |||||| | || ||||| Sbjct 17316 GCTGCCAACTACCTCGATATCAAAGCTCTCCTCGACGTCGGCTGCAAGACCGTCGCCAAT 17257 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294 ||||||||||||||||| || || || ||||| ||||| |||||||||| Sbjct 17256 ATGATCAAGGGCAAGTCCCCAGAAGAAATCCGAAAGACATTTAACATCA 17208 >seq3070 Length=35956 Score = 96.9 bits (106), Expect = 4e-14 Identities = 166/241 (69%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| || || || | | |||||| ||||| |||||||| | || ||||| Sbjct 28517 GCCTTCTGGTAGTCACCAACTCTCTTCTCGAAGAAGTTTGTCTTGCCTGCTAGGGAGATG 28576 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | ||| ||||||| | |||||| ||| ||| || || | | Sbjct 28577 TTCTCCATGAAGTCGAATGGGTTGGCAGACTTGTACACCTTCTCGTTACCAAGAGCAACT 28636 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 || || || |||||||| ||||||||||| || ||| | | ||||||||||| | Sbjct 28637 AGGAGACGATCGGCGACGAACTCGATGTATTGCTTCATCAAGTTCGCGTTCATGCCAAGA 28696 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 || || || || | |||| ||| || |||| ||||||||||| ||||| |||| Sbjct 28697 AGTGCACAAGGAAGAGCCTCGGTCAAGAATTCTTGTTCGATCTCGACAGCCTCTGTGATG 28756 Query 868931 A 868931 | Sbjct 28757 A 28757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106842946494370