Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08-
07] 3,610 sequences; 36,184,363 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq1302 131 2e-24
seq58 111 2e-18
seq3070 96.9 4e-14
>seq1302
Length=13363
Score = 131 bits (144), Expect = 2e-24
Identities = 129/164 (79%), Gaps = 2/164 (1%)
Strand=Plus/Plus
Query 1592131 GTGGGACAAGGAGTTT-TGCGACGTCGAGCAGCCCACCCTCTTTGAGTTGATCCTCGCCG 1592189
||||||| | |||| ||| | ||||| ||| | |||| |||| | || || || |
Sbjct 7733 GTGGGACCAAATGTTTATGCAA-GTCGACCAGGATATGCTCTATGAGCTCATTCTGGCTG 7791
Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249
| ||||||||| |||||||| |||| ||||||||||| |||||| |||| ||||| ||||
Sbjct 7792 CTAACTACCTCAACATCAAGGCTCTTCTCGATCTTGGCTGCAAGACTGTTGCCAATATGA 7851
Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATC 1592293
|||| |||||||| || || || ||||| ||||| || ||||||
Sbjct 7852 TCAAAGGCAAGTCTCCAGAAGAAATCCGAAAGACATTCAACATC 7895
>seq58
Length=22670
Score = 111 bits (122), Expect = 2e-18
Identities = 90/109 (83%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245
|| |||||||||||||| ||||| |||| ||||| | || |||||| | || |||||
Sbjct 17316 GCTGCCAACTACCTCGATATCAAAGCTCTCCTCGACGTCGGCTGCAAGACCGTCGCCAAT 17257
Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294
||||||||||||||||| || || || ||||| ||||| ||||||||||
Sbjct 17256 ATGATCAAGGGCAAGTCCCCAGAAGAAATCCGAAAGACATTTAACATCA 17208
>seq3070
Length=35956
Score = 96.9 bits (106), Expect = 4e-14
Identities = 166/241 (69%), Gaps = 0/241 (0%)
Strand=Plus/Plus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750
||||| ||| || || || | | |||||| ||||| |||||||| | || |||||
Sbjct 28517 GCCTTCTGGTAGTCACCAACTCTCTTCTCGAAGAAGTTTGTCTTGCCTGCTAGGGAGATG 28576
Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810
|||||| | ||| ||||||| | |||||| ||| ||| || || | |
Sbjct 28577 TTCTCCATGAAGTCGAATGGGTTGGCAGACTTGTACACCTTCTCGTTACCAAGAGCAACT 28636
Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870
|| || || |||||||| ||||||||||| || ||| | | ||||||||||| |
Sbjct 28637 AGGAGACGATCGGCGACGAACTCGATGTATTGCTTCATCAAGTTCGCGTTCATGCCAAGA 28696
Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930
|| || || || | |||| ||| || |||| ||||||||||| ||||| ||||
Sbjct 28697 AGTGCACAAGGAAGAGCCTCGGTCAAGAATTCTTGTTCGATCTCGACAGCCTCTGTGATG 28756
Query 868931 A 868931
|
Sbjct 28757 A 28757
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6106842946494370
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |