Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08- 07] 3,610 sequences; 36,184,363 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq1292 134 1e-26 seq443 109 5e-19 seq839 91.5 1e-13 >seq1292 Length=3705 Score = 134 bits (148), Expect = 1e-26 Identities = 169/232 (73%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | ||||| || || |||||||| || || ||||| || ||| || | Sbjct 2170 ATGCAGATCTTCGTCAAAACCCTCACGGGTAAAACCATCACCCTCGAGGTTGAATCCTCT 2111 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || |||||||| ||||| || ||||| || || ||||| Sbjct 2110 GATACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCACCTGATCAG 2051 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| ||||||| ||||| || || || || ||| | | | | || || || ||| Sbjct 2050 CAACGTCTGATCTTCGCCGGCAAGCAACTCGAAGATGGACGCACCCTTTCCGACTACAAC 1991 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGAA 24935 || ||||||||||| || || |||||||| | || | || || ||||||| Sbjct 1990 ATCCAAAAGGAATCCACTCTTCACTTGGTCCTTCGTCTACGTGGTGGCGGAA 1939 >seq443 Length=6205 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || | ||||| || || ||||| | ||||| ||| | | Sbjct 3100 ATGCAGATCTTCGTCAAGACTTTGACCGGAAAGACCATTACATTGGAAGTGGAATCGTCA 3041 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || |||||| |||||||| || || || || || || ||| Sbjct 3040 GATACCATTGACAATGTCAAGTCAAAGATTCAAGACAAGGAGGGTATTCCACCGGACCAA 2981 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||||||| || || ||| |||||||| |||| | || ||||| ||| Sbjct 2980 CAGCGATTGATCTTTGCTGGAAAGCAGTTGGAGGATGGCAGAACTCTTTCTGATTACAAC 2921 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTG 24913 ||||| ||||| || | ||||||||| Sbjct 2920 ATTCAGAAGGAGAGCACTTTGCACTTGGTG 2891 Score = 100 bits (110), Expect = 3e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 24719 AAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACG 24778 || || || || || || || || || || || || || | ||||||| | || | Sbjct 3541 AAGACTCTTACTGGCAAGACCATCACTCTTGAGGTCGAGTCGTCCGACACCATCGACAAC 3482 Query 24779 GTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTT 24838 || || |||||||| ||||| || || || ||||| |||||||||||||||||||| Sbjct 3481 GTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCGGATCAACAACGTTTGATCTTC 3422 Query 24839 GCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCG 24898 || || ||||| || || ||| | | | || || || ||||| ||||| ||||| Sbjct 3421 GCTGGTAAACAACTCGAAGATGGTCGCACCCTGAGCGACTACAACATCCAAAAAGAATCC 3362 Query 24899 ACACTACACTTGGTG 24913 || || ||||||||| Sbjct 3361 ACCCTTCACTTGGTG 3347 >seq839 Length=32500 Score = 91.5 bits (100), Expect = 1e-13 Identities = 125/175 (71%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 24719 AAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACG 24778 || || || || || || || || || || || || || || |||| || | || | Sbjct 17711 AAGACCCTTACGGGAAAGACCATCACCCTTGAGGTCGAGTCCTCCGATACTATTGACAAT 17652 Query 24779 GTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTT 24838 || || |||||||| ||||| || ||||| || || || ||||||||||||||||| Sbjct 17651 GTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAACAACGTTTGATCTTC 17592 Query 24839 GCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGG 24893 ||||| || || || ||||| ||| | | ||||| || ||||| ||||||| Sbjct 17591 GCCGGAAAGCAACTCGAGGACGGACGAACCCTTTCAGACTACAACATCCAAAAGG 17537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449877298370800