Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08-
07] 3,610 sequences; 36,184,363 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq1292 134 1e-26
seq443 109 5e-19
seq839 91.5 1e-13
>seq1292
Length=3705
Score = 134 bits (148), Expect = 1e-26
Identities = 169/232 (73%), Gaps = 0/232 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| | ||||| || || |||||||| || || ||||| || ||| || |
Sbjct 2170 ATGCAGATCTTCGTCAAAACCCTCACGGGTAAAACCATCACCCTCGAGGTTGAATCCTCT 2111
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| || | || | || || |||||||| ||||| || ||||| || || |||||
Sbjct 2110 GATACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCACCTGATCAG 2051
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|||||| ||||||| ||||| || || || || ||| | | | | || || || |||
Sbjct 2050 CAACGTCTGATCTTCGCCGGCAAGCAACTCGAAGATGGACGCACCCTTTCCGACTACAAC 1991
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGAA 24935
|| ||||||||||| || || |||||||| | || | || || |||||||
Sbjct 1990 ATCCAAAAGGAATCCACTCTTCACTTGGTCCTTCGTCTACGTGGTGGCGGAA 1939
>seq443
Length=6205
Score = 109 bits (120), Expect = 5e-19
Identities = 150/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| | || || | ||||| || || ||||| | ||||| ||| | |
Sbjct 3100 ATGCAGATCTTCGTCAAGACTTTGACCGGAAAGACCATTACATTGGAAGTGGAATCGTCA 3041
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| || | || | || || |||||| |||||||| || || || || || || |||
Sbjct 3040 GATACCATTGACAATGTCAAGTCAAAGATTCAAGACAAGGAGGGTATTCCACCGGACCAA 2981
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| || ||||||||||| || || ||| |||||||| |||| | || ||||| |||
Sbjct 2980 CAGCGATTGATCTTTGCTGGAAAGCAGTTGGAGGATGGCAGAACTCTTTCTGATTACAAC 2921
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTG 24913
||||| ||||| || | |||||||||
Sbjct 2920 ATTCAGAAGGAGAGCACTTTGCACTTGGTG 2891
Score = 100 bits (110), Expect = 3e-16
Identities = 139/195 (71%), Gaps = 0/195 (0%)
Strand=Plus/Minus
Query 24719 AAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACG 24778
|| || || || || || || || || || || || || | ||||||| | || |
Sbjct 3541 AAGACTCTTACTGGCAAGACCATCACTCTTGAGGTCGAGTCGTCCGACACCATCGACAAC 3482
Query 24779 GTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTT 24838
|| || |||||||| ||||| || || || ||||| ||||||||||||||||||||
Sbjct 3481 GTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCGGATCAACAACGTTTGATCTTC 3422
Query 24839 GCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCG 24898
|| || ||||| || || ||| | | | || || || ||||| ||||| |||||
Sbjct 3421 GCTGGTAAACAACTCGAAGATGGTCGCACCCTGAGCGACTACAACATCCAAAAAGAATCC 3362
Query 24899 ACACTACACTTGGTG 24913
|| || |||||||||
Sbjct 3361 ACCCTTCACTTGGTG 3347
>seq839
Length=32500
Score = 91.5 bits (100), Expect = 1e-13
Identities = 125/175 (71%), Gaps = 0/175 (0%)
Strand=Plus/Minus
Query 24719 AAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACG 24778
|| || || || || || || || || || || || || || |||| || | || |
Sbjct 17711 AAGACCCTTACGGGAAAGACCATCACCCTTGAGGTCGAGTCCTCCGATACTATTGACAAT 17652
Query 24779 GTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTT 24838
|| || |||||||| ||||| || ||||| || || || |||||||||||||||||
Sbjct 17651 GTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAACAACGTTTGATCTTC 17592
Query 24839 GCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGG 24893
||||| || || || ||||| ||| | | ||||| || ||||| |||||||
Sbjct 17591 GCCGGAAAGCAACTCGAGGACGGACGAACCCTTTCAGACTACAACATCCAAAAGG 17537
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449877298370800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |