Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08- 07] 3,610 sequences; 36,184,363 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq58 111 2e-18 seq3070 91.5 2e-12 >seq58 Length=22670 Score = 111 bits (122), Expect = 2e-18 Identities = 90/109 (83%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706 || |||||||||||||| ||||| | |||||||| | || ||||||||||| ||||| Sbjct 17316 GCTGCCAACTACCTCGATATCAAAGCTCTCCTCGACGTCGGCTGCAAGACCGTCGCCAAT 17257 Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCA 2035755 | |||||||||||||| || || || ||||| ||||| |||||||||| Sbjct 17256 ATGATCAAGGGCAAGTCCCCAGAAGAAATCCGAAAGACATTTAACATCA 17208 >seq3070 Length=35956 Score = 91.5 bits (100), Expect = 2e-12 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 793925 CTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGC 793984 |||||| ||||| |||||||| | || ||||| |||||| | ||| |||||||| Sbjct 28543 CTCGAAGAAGTTTGTCTTGCCTGCTAGGGAGATGTTCTCCATGAAGTCGAATGGGTTGGC 28602 Query 793985 CGTCAGGTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGGCGGTCGGCGACGAATTCAAT 794044 | | ||| ||||||| || || | | || || || ||||||||||| || || Sbjct 28603 AGACTTGTACACCTTCTCGTTACCAAGAGCAACTAGGAGACGATCGGCGACGAACTCGAT 28662 Query 794045 GTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCACGGGCAGCGACTCGCTGAC 794104 ||| || ||| | | ||||||||||| | || || || || | |||| | | Sbjct 28663 GTATTGCTTCATCAAGTTCGCGTTCATGCCAAGAAGTGCACAAGGAAGAGCCTCGGTCAA 28722 Query 794105 AAACTCTTTCTCGATCTCGACGGCCTCGATGATGA 794139 || |||| ||||||||||| ||||| |||||| Sbjct 28723 GAATTCTTGTTCGATCTCGACAGCCTCTGTGATGA 28757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915862387834790