Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08-
07] 3,610 sequences; 36,184,363 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq58 111 2e-18
seq3070 91.5 2e-12
>seq58
Length=22670
Score = 111 bits (122), Expect = 2e-18
Identities = 90/109 (83%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706
|| |||||||||||||| ||||| | |||||||| | || ||||||||||| |||||
Sbjct 17316 GCTGCCAACTACCTCGATATCAAAGCTCTCCTCGACGTCGGCTGCAAGACCGTCGCCAAT 17257
Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCA 2035755
| |||||||||||||| || || || ||||| ||||| ||||||||||
Sbjct 17256 ATGATCAAGGGCAAGTCCCCAGAAGAAATCCGAAAGACATTTAACATCA 17208
>seq3070
Length=35956
Score = 91.5 bits (100), Expect = 2e-12
Identities = 149/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 793925 CTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGC 793984
|||||| ||||| |||||||| | || ||||| |||||| | ||| ||||||||
Sbjct 28543 CTCGAAGAAGTTTGTCTTGCCTGCTAGGGAGATGTTCTCCATGAAGTCGAATGGGTTGGC 28602
Query 793985 CGTCAGGTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGGCGGTCGGCGACGAATTCAAT 794044
| | ||| ||||||| || || | | || || || ||||||||||| || ||
Sbjct 28603 AGACTTGTACACCTTCTCGTTACCAAGAGCAACTAGGAGACGATCGGCGACGAACTCGAT 28662
Query 794045 GTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCACGGGCAGCGACTCGCTGAC 794104
||| || ||| | | ||||||||||| | || || || || | |||| | |
Sbjct 28663 GTATTGCTTCATCAAGTTCGCGTTCATGCCAAGAAGTGCACAAGGAAGAGCCTCGGTCAA 28722
Query 794105 AAACTCTTTCTCGATCTCGACGGCCTCGATGATGA 794139
|| |||| ||||||||||| ||||| ||||||
Sbjct 28723 GAATTCTTGTTCGATCTCGACAGCCTCTGTGATGA 28757
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7915862387834790
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |