Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08-
07] 3,610 sequences; 36,184,363 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq1292 134 9e-27
seq839 113 3e-20
seq443 104 2e-17
>seq1292
Length=3705
Score = 134 bits (148), Expect = 9e-27
Identities = 162/218 (74%), Gaps = 8/218 (4%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||||| ||||| ||| ||||| || ||||| ||||| || ||| |||| ||||
Sbjct 1959 AGGACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGTCCATCT 2018
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| |||||||| |||||||||||||| |||||||| || | || | |||||||||||
Sbjct 2019 TCGAGTTGCTTGCCGGCGAAGATCAGACGTTGCTGATCAGGTGGGATTCCCTCCTTGTCC 2078
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941
| || || ||||| || | ||||| ||| || || || || | ||| ||
Sbjct 2079 TGGATCTTGGACTTGAC--AT--TGTCGATGGTATCAGAGGATTCAACCTCGAGGGTGAT 2134
Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGA 34979
||| || ||||||||||| || || |||||||||||||
Sbjct 2135 GGTTTTACCCGTGAGGGTTTTGACGAAGATCTGCATGA 2172
>seq839
Length=32500
Score = 113 bits (124), Expect = 3e-20
Identities = 134/182 (74%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847
|||| || ||||| ||||| || ||| | || | || || |||||||||||||||||||
Sbjct 17537 CCTTTTGGATGTTGTAGTCTGAAAGGGTTCGTCCGTCCTCGAGTTGCTTTCCGGCGAAGA 17596
Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907
||| ||||| ||||| | || | ||||||||||| | || || |||||
Sbjct 17597 TCAAACGTTGTTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 17656
Query 34908 CTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAA 34967
| || | || || |||||| |||| ||| |||||||||||||| |||||||| || |
Sbjct 17657 CAATAGTATCGGAGGACTCGACCTCAAGGGTGATGGTCTTTCCCGTAAGGGTCTTGACGA 17716
Query 34968 AG 34969
||
Sbjct 17717 AG 17718
>seq443
Length=6205
Score = 104 bits (114), Expect = 2e-17
Identities = 150/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||||| || | ||| ||| ||||| ||||| ||||| ||||| |||| ||||
Sbjct 3117 AGGACCAAATGCAGTGTGGACTCTTTCTGGATGTTGTAGTCTGATAGAGTGCGGCCATCC 3176
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| |||||||| || || ||||| || ||||||||||| | || | |||||||| ||
Sbjct 3177 TCAAGTTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGGATACCCTCCTTATCT 3236
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| || ||| ||| ||| | || | || | ||| || || | || || |||
Sbjct 3237 TGAATCTTTGATTTCACGTTGTCGATGGTATCTGACGACTCAACCTCCAATGTGATTGTC 3296
Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
||||| || || ||||| || ||||| |||||
Sbjct 3297 TTTCCGGTAAGTGTCTTCACGAAGATTTGCAT 3328
Score = 98.7 bits (108), Expect = 6e-16
Identities = 149/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| |||| ||| | |||||||||||||||||||| || || || || | | ||||
Sbjct 2889 AGCACCAAGTGCAAAGTGCTCTCCTTCTGAATGTTGTAATCAGAAAGAGTTCTGCCATCC 2948
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|||| |||||||| || ||||||| ||| || ||||| | || | |||||||||||
Sbjct 2949 TCCAACTGCTTTCCAGCAAAGATCAATCGCTGTTGGTCCGGTGGAATACCCTCCTTGTCT 3008
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| || ||| ||||| | || | || | || || || | || ||||||
Sbjct 3009 TGAATCTTTGACTTGACATTGTCAATGGTATCTGACGATTCCACTTCCAATGTAATGGTC 3068
Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
||||| || | ||||| || |||||||||||
Sbjct 3069 TTTCCGGTCAAAGTCTTGACGAAGATCTGCAT 3100
Score = 82.4 bits (90), Expect = 5e-11
Identities = 138/200 (69%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| |||| ||||| |||| || || || ||||| ||||| ||| |||| ||||
Sbjct 3345 AGCACCAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAGGGTGCGACCATCT 3404
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| ||||| || || |||||||||| ||||| || || | || | |||||||||||
Sbjct 3405 TCGAGTTGTTTACCAGCGAAGATCAAACGTTGTTGATCCGGAGGAATGCCCTCCTTGTCC 3464
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| || || |||||| | || | || | |||||| |||| || ||||||
Sbjct 3465 TGGATCTTGGACTTGACGTTGTCGATGGTGTCGGACGACTCGACCTCAAGAGTGATGGTC 3524
Query 34946 TTTCCCGTGAGGGTCTTTAC 34965
|| || || || ||||| ||
Sbjct 3525 TTGCCAGTAAGAGTCTTGAC 3544
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325678470534590
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |