Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08-
07] 3,610 sequences; 36,184,363 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq443 129 5e-25
>seq443
Length=6205
Score = 129 bits (142), Expect = 5e-25
Identities = 143/191 (75%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631
|| |||||||| ||||| |||||||||||||| ||||| || || | ||||||| |
Sbjct 3342 CGGAGCACCAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAGGGTGCGACCA 3401
Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691
|| ||||||||||| ||||| | ||||| | ||| |||||||| ||||| ||||| |||
Sbjct 3402 TCTTCGAGTTGTTTACCAGCGAAGATCAAACGTTGTTGATCCGGAGGAATGCCCTCCTTG 3461
Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751
|| || | || ||||| | || | ||||| || || || |||||||| ||
Sbjct 3462 TCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGACGACTCGACCTCAAGAGTGATG 3521
Query 29752 GTTTTGCCAGT 29762
|| ||||||||
Sbjct 3522 GTCTTGCCAGT 3532
Score = 100 bits (110), Expect = 2e-16
Identities = 154/217 (71%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630
||| |||||||| || | ||| || || |||||||| ||||| | || || |
Sbjct 2885 ACGAAGCACCAAGTGCAAAGTGCTCTCCTTCTGAATGTTGTAATCAGAAAGAGTTCTGCC 2944
Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690
||| || | || || |||||| | ||||||| || || ||||| ||||||||||| ||
Sbjct 2945 ATCCTCCAACTGCTTTCCAGCAAAGATCAATCGCTGTTGGTCCGGTGGAATACCCTCCTT 3004
Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749
|||||| ||| |||| |||||| | || | || || || ||| ||||| | || |
Sbjct 3005 GTCTTG-AATCTTTGACTTGACATTGTCAATGGTATCTGACGATTCCACTTCCAATGTAA 3063
Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
| || || || || || || || || || ||||||||
Sbjct 3064 TGGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCAT 3100
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 385202251559010
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |