Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08-
07] 3,610 sequences; 36,184,363 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq1872 224 7e-53
seq56 105 5e-17
seq201 87.8 1e-11
seq41 87.8 1e-11
>seq1872
Length=6849
Score = 224 bits (248), Expect = 7e-53
Identities = 902/1402 (64%), Gaps = 19/1402 (1%)
Strand=Plus/Minus
Query 281426 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 281485
|||| ||||| | ||||| |||||||| | ||| || ||||| || || || || ||
Sbjct 6521 GCAGAGACATTCATGATACCGTTGGCATCAATATCGAAGGTGACCTCGATCTGTGGAACA 6462
Query 281486 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 281545
|| | |||||||||| || || | | ||| |||| ||| || || || ||
Sbjct 6461 CCACGAGGAGCAGGTGGAATACCAGTGAGCTCAAACTTTCCGAGAAGGTTGTTGTCCTTT 6402
Query 281546 GTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAA 281605
||| ||| |||||||||||| | ||| || || ||| ||| ||||| || |
Sbjct 6401 GTGCGCGTTCTTTCACCCTCGAAGACTTGAATCAAGACACCAGGTTGGTTATCGGAGAAG 6342
Query 281606 GTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTC 281665
|| | || ||| || || || ||||| || ||||| | | ||| | ||||||
Sbjct 6341 GTAGAGAAGACTTCAGACTTCTTGGTGGGAATGGTGGTGTTGCGGTGAATGAGCTTGGTC 6282
Query 281666 ATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATA 281725
|| |||||||| || || | ||||||||| | || | |||||| | || | ||
Sbjct 6281 ATTTGTCCACCAGCAGTCTCGATACCAAGAGACAATGGCGCGACATCGAGAAGAAGGATC 6222
Query 281726 T--TTTGAAGTTTTTCAT-CAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCA 281782
| || | || || || ||| | |||| ||| ||||| || || | ||||||||
Sbjct 6221 TCGTTGGTAGACTTGGATGAAGTGTCACCAGAAAGGATAGCAGCCTGGACGGCAGCACCG 6162
Query 281783 TATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTT 281842
||||||||||| |||||||| || | | | ||| | | ||||| ||||| | |
Sbjct 6161 TATGCAACAGCCTCATCAGGGTTGATGGACTTGTTTGGCTCCTTACCGTTGAAGTAGTCG 6102
Query 281843 GAAAGAAGTTGTCT---TACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCA 281899
| | || | ||| ||| | || ||||| | || || || || || || || ||
Sbjct 6101 GTGATGAGCT-TCTGGATACGT--GGGATACGGGTGGAACCACCGACCAAGACGATCTCG 6045
Query 281900 TGCAC-CTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAAC-GGGTTCAAGAC 281957
|| || ||| ||||| || | || | || | || || || ||||| |
Sbjct 6044 TGGACTCTG-GATTTGTCGATCTTGGCGTCAGCGAGGACACGGTCGACTGGGTTGGTG-G 5987
Query 281958 CAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTAT 282017
|| || || | ||| |||||||| ||||| ||| | ||| | || | |
Sbjct 5986 TAGATCGGAAGAGGTCCTGGCAAAGTTCCTCGAAACGAGCACGAGTGATAGAGGTGTAGA 5927
Query 282018 AATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTG 282077
| || || || ||||| | ||| || | ||| || | || || | || ||||| || |
Sbjct 5926 AGTCGATACCCTCGAAGAGAGAGTCGATTTCGATGGATGTCTGGGCAGAGGAAGAGAGGG 5867
Query 282078 CACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGC-TGATTGATTC 282136
||| ||||||||||| ||||| || | || | || | || || | | || ||
Sbjct 5866 TACGCTTAGCACGTTCGCATGCAGTGCGGAGACGACGAAGAGCACGAGCGTTAGTGCTT- 5808
Query 282137 AAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCA 282196
|||||| | || | || | |||||| || | || | | || ||||| || ||
Sbjct 5807 AAATCTTTCTTGTGCTTGCGCTTGAACTCGTTTACGAAGTGGTTAACGAGACGGTTGTCG 5748
Query 282197 AAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCT 282256
|| || ||||| ||||| | ||| | || | || | | |||| ||| | || ||
Sbjct 5747 AAGTCCTCACCACCCAAGTGAGTGTCACCGGCGGTGGACTTGACTTCGAAGATACCCTCC 5688
Query 282257 TCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTC 282316
|| | || ||| |||| |||||| |||||| ||||| | ||| || || || || ||
Sbjct 5687 TCGATAGTCAAGAGAGAAACATCGAAGGTTCCTCCACCAAGATCGAAGATGAGAACGTTT 5628
Query 282317 ATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTA 282376
|| || || || || | ||| || |||| ||||| || || || || ||
Sbjct 5627 CGCTCACCCTCAACCTTCTTGTCCAAACCGTAAGCAATGGCAGCGGCGGTGGGCTCGTTG 5568
Query 282377 ATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGT 282436
|| || | | |||||| ||||| || || ||||| ||||| |||||||| | |||
Sbjct 5567 ATGATACGGAGAACATTGAGACCGGCGATGAGACCTGCGTCTTTTGTGGCTTGACGTTGG 5508
Query 282437 GAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTT-ACTTCTTTTCCAATATA 282495
|| ||| | || ||||| |||||||| | || || | |||| || | || | ||
Sbjct 5507 GAGTCGGTGAAGTATGCTGGAACAGTGACGACAGCGT-TGTTGACCGTTCCACCGAGGTA 5449
Query 282496 AGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATA 282555
|| || || | |||| || || | ||| || || |||| ||| || | |
Sbjct 5448 GGCCTCAGCAGTCTCCCTCATCTTGACCAAGACCATCGAGGAGATTTCTTCGGGTGTGAA 5389
Query 282556 TTGCTTGGATTCA-TTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAA 282614
|||||| | ||| |||| | ||||||| ||| || ||| | || |
Sbjct 5388 TTGCTTAGCCTCACCCTTGA-ACTCGACTTCAATGACTGGCTTTCCGCCACGGTCGATGA 5330
Query 282615 CTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAA 282674
| || ||||| | | |||||||| | ||| || | |||| || | | ||| |
Sbjct 5329 CCTTGAATGGGAAGTGCTTCATATCAGCTTGGACTTCTGGGTCGGCGAATTTACGACCGA 5270
Query 282675 TTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTG 282734
| | || || ||||| || | || || || || || | || |||| | || || |
Sbjct 5269 TCAGACGCTTAGCATCGAAGACTGTGTTTGTAGGGTTCATGGCGACTTGGTTCTTTGCGG 5210
Query 282735 CATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTAC 282794
||||||| |||||| |||| || ||||| || | ||| | || |||||||| || || |
Sbjct 5209 CATCTCCGATCAGACGTTCGGTGTCTGTGAAAGCAACGAACGAAGGAGTTGTTCGGTTTC 5150
Query 282795 CTTGATCATTCGCAATAATTTC 282816
|||| || || || ||||||||
Sbjct 5149 CTTGGTCGTTGGCGATAATTTC 5128
>seq56
Length=28229
Score = 105 bits (116), Expect = 5e-17
Identities = 115/153 (75%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 282321 CTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAA 282380
||||||| | || ||| || || || || |||| || |||||||| ||||| |||| |
Sbjct 6657 CTTTGTCCTCGTCTTTCTCGAGGCCGTAGGCAAGTGCGGCAGCAGTAGGTTCGTTAACCA 6716
Query 282381 TTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAAT 282440
||| | ||| || | ||| || ||| ||||| ||||| || || || | |||||| |
Sbjct 6717 CTCTGAGAACGTTCAAACCGGCGATTTGGCCTGCGTCTTTTGTTGCCTGGCGTTGTGAGT 6776
Query 282441 CGTTAAAATATGCAGGAACAGTAATAACGGCAT 282473
|||| || || ||||||||||||| ||| ||||
Sbjct 6777 CGTTGAAGTAGGCAGGAACAGTAACAACAGCAT 6809
Score = 105 bits (116), Expect = 5e-17
Identities = 115/153 (75%), Gaps = 0/153 (0%)
Strand=Plus/Minus
Query 282321 CTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAA 282380
||||||| | || ||| || || || || |||| || |||||||| ||||| |||| |
Sbjct 21573 CTTTGTCCTCGTCTTTCTCGAGGCCGTAGGCAAGTGCGGCAGCAGTAGGTTCGTTAACCA 21514
Query 282381 TTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAAT 282440
||| | ||| || | ||| || ||| ||||| ||||| || || || | |||||| |
Sbjct 21513 CTCTGAGAACGTTCAAACCGGCGATTTGGCCTGCGTCTTTTGTTGCCTGGCGTTGTGAGT 21454
Query 282441 CGTTAAAATATGCAGGAACAGTAATAACGGCAT 282473
|||| || || ||||||||||||| ||| ||||
Sbjct 21453 CGTTGAAGTAGGCAGGAACAGTAACAACAGCAT 21421
>seq201
Length=62902
Score = 87.8 bits (96), Expect = 1e-11
Identities = 138/198 (70%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 282688 ATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAG 282747
|||||| || || || |||| || | ||||| || | |||||||||||||| | ||
Sbjct 36200 ATCAAAGATGGTGTTCTTTGGGTTTGCCGCAGCCTGGTTCTTGGCTGCATCTCCGACCAA 36141
Query 282748 ATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGC 282807
| |||| || || || | |||||||| ||||| | || | ||||| || || |
Sbjct 36140 ACGTTCCTCATCGGTGAAGGCGACATATGAAGGAGTAATACGGTGTCCTTGGTCGTTTAC 36081
Query 282808 AATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATC 282867
| ||| |||||||| || |||||| ||||| || ||| | || ||||| | |||
Sbjct 36080 CAGAATCTCAACTTTTCCCTTTTGCATCACACCGACGCAAGAGTATGTGGTTCCAAGATC 36021
Query 282868 AATACCAATAGCAATTTT 282885
||||| || | |||||
Sbjct 36020 GATACCGATGACTATTTT 36003
>seq41
Length=27402
Score = 87.8 bits (96), Expect = 1e-11
Identities = 104/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 435132 TGAATTTTTCTTCCAAGTAATGGCTGGTCGTGAAGGTATTATTAATACAGCTATTAAAAC 435191
|||||| |||||||| | |||||||||||||||||| | || |||| || | || ||
Sbjct 16790 TGAATTCTTCTTCCACGCCATGGCTGGTCGTGAAGGTTTGATCGATACTGCAGTCAAGAC 16731
Query 435192 TGCTGATACTGGTTATATTCAAAGAAAACTTGTCAAGATGCTTGAAGATATTAAACAAGA 435251
|| || |||||||| |||||| | ||||||||| ||||||||| | | |
Sbjct 16730 CGCAGAAACTGGTTACATTCAACGTCGTCTTGTCAAGGCTCTTGAAGATGTCATGGCGAA 16671
Query 435252 ATATGATGGTACAGTGAGAAA 435272
|||||| ||||| || ||||
Sbjct 16670 ATATGACGGTACGGTCCGAAA 16650
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3740453164255860
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |