Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08- 07] 3,610 sequences; 36,184,363 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq1872 224 7e-53 seq56 105 5e-17 seq201 87.8 1e-11 seq41 87.8 1e-11 >seq1872 Length=6849 Score = 224 bits (248), Expect = 7e-53 Identities = 902/1402 (64%), Gaps = 19/1402 (1%) Strand=Plus/Minus Query 281426 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 281485 |||| ||||| | ||||| |||||||| | ||| || ||||| || || || || || Sbjct 6521 GCAGAGACATTCATGATACCGTTGGCATCAATATCGAAGGTGACCTCGATCTGTGGAACA 6462 Query 281486 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 281545 || | |||||||||| || || | | ||| |||| ||| || || || || Sbjct 6461 CCACGAGGAGCAGGTGGAATACCAGTGAGCTCAAACTTTCCGAGAAGGTTGTTGTCCTTT 6402 Query 281546 GTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAA 281605 ||| ||| |||||||||||| | ||| || || ||| ||| ||||| || | Sbjct 6401 GTGCGCGTTCTTTCACCCTCGAAGACTTGAATCAAGACACCAGGTTGGTTATCGGAGAAG 6342 Query 281606 GTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTC 281665 || | || ||| || || || ||||| || ||||| | | ||| | |||||| Sbjct 6341 GTAGAGAAGACTTCAGACTTCTTGGTGGGAATGGTGGTGTTGCGGTGAATGAGCTTGGTC 6282 Query 281666 ATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATA 281725 || |||||||| || || | ||||||||| | || | |||||| | || | || Sbjct 6281 ATTTGTCCACCAGCAGTCTCGATACCAAGAGACAATGGCGCGACATCGAGAAGAAGGATC 6222 Query 281726 T--TTTGAAGTTTTTCAT-CAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCA 281782 | || | || || || ||| | |||| ||| ||||| || || | |||||||| Sbjct 6221 TCGTTGGTAGACTTGGATGAAGTGTCACCAGAAAGGATAGCAGCCTGGACGGCAGCACCG 6162 Query 281783 TATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTT 281842 ||||||||||| |||||||| || | | | ||| | | ||||| ||||| | | Sbjct 6161 TATGCAACAGCCTCATCAGGGTTGATGGACTTGTTTGGCTCCTTACCGTTGAAGTAGTCG 6102 Query 281843 GAAAGAAGTTGTCT---TACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCA 281899 | | || | ||| ||| | || ||||| | || || || || || || || || Sbjct 6101 GTGATGAGCT-TCTGGATACGT--GGGATACGGGTGGAACCACCGACCAAGACGATCTCG 6045 Query 281900 TGCAC-CTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAAC-GGGTTCAAGAC 281957 || || ||| ||||| || | || | || | || || || ||||| | Sbjct 6044 TGGACTCTG-GATTTGTCGATCTTGGCGTCAGCGAGGACACGGTCGACTGGGTTGGTG-G 5987 Query 281958 CAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTAT 282017 || || || | ||| |||||||| ||||| ||| | ||| | || | | Sbjct 5986 TAGATCGGAAGAGGTCCTGGCAAAGTTCCTCGAAACGAGCACGAGTGATAGAGGTGTAGA 5927 Query 282018 AATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTG 282077 | || || || ||||| | ||| || | ||| || | || || | || ||||| || | Sbjct 5926 AGTCGATACCCTCGAAGAGAGAGTCGATTTCGATGGATGTCTGGGCAGAGGAAGAGAGGG 5867 Query 282078 CACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGC-TGATTGATTC 282136 ||| ||||||||||| ||||| || | || | || | || || | | || || Sbjct 5866 TACGCTTAGCACGTTCGCATGCAGTGCGGAGACGACGAAGAGCACGAGCGTTAGTGCTT- 5808 Query 282137 AAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCA 282196 |||||| | || | || | |||||| || | || | | || ||||| || || Sbjct 5807 AAATCTTTCTTGTGCTTGCGCTTGAACTCGTTTACGAAGTGGTTAACGAGACGGTTGTCG 5748 Query 282197 AAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCT 282256 || || ||||| ||||| | ||| | || | || | | |||| ||| | || || Sbjct 5747 AAGTCCTCACCACCCAAGTGAGTGTCACCGGCGGTGGACTTGACTTCGAAGATACCCTCC 5688 Query 282257 TCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTC 282316 || | || ||| |||| |||||| |||||| ||||| | ||| || || || || || Sbjct 5687 TCGATAGTCAAGAGAGAAACATCGAAGGTTCCTCCACCAAGATCGAAGATGAGAACGTTT 5628 Query 282317 ATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTA 282376 || || || || || | ||| || |||| ||||| || || || || || Sbjct 5627 CGCTCACCCTCAACCTTCTTGTCCAAACCGTAAGCAATGGCAGCGGCGGTGGGCTCGTTG 5568 Query 282377 ATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGT 282436 || || | | |||||| ||||| || || ||||| ||||| |||||||| | ||| Sbjct 5567 ATGATACGGAGAACATTGAGACCGGCGATGAGACCTGCGTCTTTTGTGGCTTGACGTTGG 5508 Query 282437 GAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTT-ACTTCTTTTCCAATATA 282495 || ||| | || ||||| |||||||| | || || | |||| || | || | || Sbjct 5507 GAGTCGGTGAAGTATGCTGGAACAGTGACGACAGCGT-TGTTGACCGTTCCACCGAGGTA 5449 Query 282496 AGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATA 282555 || || || | |||| || || | ||| || || |||| ||| || | | Sbjct 5448 GGCCTCAGCAGTCTCCCTCATCTTGACCAAGACCATCGAGGAGATTTCTTCGGGTGTGAA 5389 Query 282556 TTGCTTGGATTCA-TTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAA 282614 |||||| | ||| |||| | ||||||| ||| || ||| | || | Sbjct 5388 TTGCTTAGCCTCACCCTTGA-ACTCGACTTCAATGACTGGCTTTCCGCCACGGTCGATGA 5330 Query 282615 CTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAA 282674 | || ||||| | | |||||||| | ||| || | |||| || | | ||| | Sbjct 5329 CCTTGAATGGGAAGTGCTTCATATCAGCTTGGACTTCTGGGTCGGCGAATTTACGACCGA 5270 Query 282675 TTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTG 282734 | | || || ||||| || | || || || || || | || |||| | || || | Sbjct 5269 TCAGACGCTTAGCATCGAAGACTGTGTTTGTAGGGTTCATGGCGACTTGGTTCTTTGCGG 5210 Query 282735 CATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTAC 282794 ||||||| |||||| |||| || ||||| || | ||| | || |||||||| || || | Sbjct 5209 CATCTCCGATCAGACGTTCGGTGTCTGTGAAAGCAACGAACGAAGGAGTTGTTCGGTTTC 5150 Query 282795 CTTGATCATTCGCAATAATTTC 282816 |||| || || || |||||||| Sbjct 5149 CTTGGTCGTTGGCGATAATTTC 5128 >seq56 Length=28229 Score = 105 bits (116), Expect = 5e-17 Identities = 115/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 282321 CTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAA 282380 ||||||| | || ||| || || || || |||| || |||||||| ||||| |||| | Sbjct 6657 CTTTGTCCTCGTCTTTCTCGAGGCCGTAGGCAAGTGCGGCAGCAGTAGGTTCGTTAACCA 6716 Query 282381 TTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAAT 282440 ||| | ||| || | ||| || ||| ||||| ||||| || || || | |||||| | Sbjct 6717 CTCTGAGAACGTTCAAACCGGCGATTTGGCCTGCGTCTTTTGTTGCCTGGCGTTGTGAGT 6776 Query 282441 CGTTAAAATATGCAGGAACAGTAATAACGGCAT 282473 |||| || || ||||||||||||| ||| |||| Sbjct 6777 CGTTGAAGTAGGCAGGAACAGTAACAACAGCAT 6809 Score = 105 bits (116), Expect = 5e-17 Identities = 115/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 282321 CTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAA 282380 ||||||| | || ||| || || || || |||| || |||||||| ||||| |||| | Sbjct 21573 CTTTGTCCTCGTCTTTCTCGAGGCCGTAGGCAAGTGCGGCAGCAGTAGGTTCGTTAACCA 21514 Query 282381 TTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAAT 282440 ||| | ||| || | ||| || ||| ||||| ||||| || || || | |||||| | Sbjct 21513 CTCTGAGAACGTTCAAACCGGCGATTTGGCCTGCGTCTTTTGTTGCCTGGCGTTGTGAGT 21454 Query 282441 CGTTAAAATATGCAGGAACAGTAATAACGGCAT 282473 |||| || || ||||||||||||| ||| |||| Sbjct 21453 CGTTGAAGTAGGCAGGAACAGTAACAACAGCAT 21421 >seq201 Length=62902 Score = 87.8 bits (96), Expect = 1e-11 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 282688 ATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAG 282747 |||||| || || || |||| || | ||||| || | |||||||||||||| | || Sbjct 36200 ATCAAAGATGGTGTTCTTTGGGTTTGCCGCAGCCTGGTTCTTGGCTGCATCTCCGACCAA 36141 Query 282748 ATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGC 282807 | |||| || || || | |||||||| ||||| | || | ||||| || || | Sbjct 36140 ACGTTCCTCATCGGTGAAGGCGACATATGAAGGAGTAATACGGTGTCCTTGGTCGTTTAC 36081 Query 282808 AATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATC 282867 | ||| |||||||| || |||||| ||||| || ||| | || ||||| | ||| Sbjct 36080 CAGAATCTCAACTTTTCCCTTTTGCATCACACCGACGCAAGAGTATGTGGTTCCAAGATC 36021 Query 282868 AATACCAATAGCAATTTT 282885 ||||| || | ||||| Sbjct 36020 GATACCGATGACTATTTT 36003 >seq41 Length=27402 Score = 87.8 bits (96), Expect = 1e-11 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 435132 TGAATTTTTCTTCCAAGTAATGGCTGGTCGTGAAGGTATTATTAATACAGCTATTAAAAC 435191 |||||| |||||||| | |||||||||||||||||| | || |||| || | || || Sbjct 16790 TGAATTCTTCTTCCACGCCATGGCTGGTCGTGAAGGTTTGATCGATACTGCAGTCAAGAC 16731 Query 435192 TGCTGATACTGGTTATATTCAAAGAAAACTTGTCAAGATGCTTGAAGATATTAAACAAGA 435251 || || |||||||| |||||| | ||||||||| ||||||||| | | | Sbjct 16730 CGCAGAAACTGGTTACATTCAACGTCGTCTTGTCAAGGCTCTTGAAGATGTCATGGCGAA 16671 Query 435252 ATATGATGGTACAGTGAGAAA 435272 |||||| ||||| || |||| Sbjct 16670 ATATGACGGTACGGTCCGAAA 16650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740453164255860