Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08-
07] 3,610 sequences; 36,184,363 total letters
Query= NC_024697.1
Length=370920
Score E
Sequences producing significant alignments: (Bits) Value
seq60 183 7e-41
seq3070 122 2e-22
>seq60
Length=14677
Score = 183 bits (202), Expect = 7e-41
Identities = 340/493 (69%), Gaps = 7/493 (1%)
Strand=Plus/Minus
Query 110552 TATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAAACTCTGGAGG 110611
|||||| |||||||||||| | || || | |||| | || |||||||| |||||||
Sbjct 9511 TATTGATGGTATTTATGATACCCTCAAGACATGTGCTATGATCTCTAAAAATGCTGGAGG 9452
Query 110612 AATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCAACAGCGAAGGG 110671
|||||| | || |||| || || | | || ||| | ||||| | || ||
Sbjct 9451 TATTGGTCTCAACATTCACAGAATCCGTGCCACTGGTGCATACATCGCCGGTACCAACGG 9392
Query 110672 TG-CTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGA 110730
| || |||| | | | || || ||| || |||| |||||| ||||||| | ||| ||
Sbjct 9391 TAACTCCAACGGCA-TCGTACCCATGCTACGAGTTTTCAACAACACTGCTAGATACGTCG 9333
Query 110731 ATCAAGGTGGTAAGA---GAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAG 110787
| |||||||| || | | ||| ||||||| ||||||| || |||||||| |||
Sbjct 9332 ACCAAGGTGGAAACAAGCGTCCTGGTGCATTTGCAGTCTATCTTGAGCCTTGGCACGCAG 9273
Query 110788 ATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTG 110847
|| | || || ||| | || ||||| || || || || |||||| | || ||||
Sbjct 9272 ATGTTTTCGAGTTCCTGGACCTTCGAAAGAACCATGGCAAGGAAGAAGTCCGCGCCCGTG 9213
Query 110848 ATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATG-GC 110906
|| | || ||||| |||||||| | ||| | |||||||| |||||| || | || | |
Sbjct 9212 ATCTTTTCTATGCCTTGTGGATTCCGGATCTCTTCATGAAGCGTGTTGAAAAGAACGCGG 9153
Query 110907 ATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAG 110966
|| ||| | || ||||| || || | |||||| | ||||||||||||| | |||
Sbjct 9152 AT-TGGACACTAATGTGCCCCAATGAATGTCCTGGGTTGGCTGATGTATATGGCGACGAG 9094
Query 110967 TTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAACAAATTCCAGCT 111026
||||||| || || || | ||||| || ||||| | |||||| || |||
Sbjct 9093 TTTGAAGCTCTCTATGAGAGTTATGAGAAGGAAGGTAGAGGTCGCAAGACCATCAAAGCC 9034
Query 111027 CAAGAACTTTGGT 111039
||| | |||||||
Sbjct 9033 CAAAAGCTTTGGT 9021
>seq3070
Length=35956
Score = 122 bits (134), Expect = 2e-22
Identities = 159/220 (72%), Gaps = 0/220 (0%)
Strand=Plus/Minus
Query 131787 TTCCTGCAATTAAAAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTA 131846
||||| ||||| |||||||| || |||||| | | |||||||||||| | | |||
Sbjct 29033 TTCCTTGCATTAAGAAGAAAGCCGACTGGGCTGTCAGATGGATTCAAGACAAAAACTCTA 28974
Query 131847 ATTTTTCTACAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTT 131906
||| || | || || ||||||||| |||||| || || ||||| || | |
Sbjct 28973 CCTTTGCTCAGCGTCTGGTTGCTTTTGCTGCTGTTGAGGGCATCTTCTTCAGTGGATCAT 28914
Query 131907 TCTGTGCTATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATC 131966
|| | ||||||| ||||| ||||||||||| |||||| |||| ||| | || ||||||
Sbjct 28913 TCGCTTCTATCTTCTGGCTCAAGAAGCGTGGCTTGATGGCTGGTCTCACTTTCTCCAATG 28854
Query 131967 AATTCATCTCGAGAGATGAAGCATTGCATACTGAATTTGC 132006
| ||||||| | ||||||| | ||||| || || ||
Sbjct 28853 AGCTCATCTCCCGTGATGAAGGTCTCCATACCGACTTCGC 28814
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1186757906199210
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |