Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08- 07] 3,610 sequences; 36,184,363 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq60 183 7e-41 seq3070 122 2e-22 >seq60 Length=14677 Score = 183 bits (202), Expect = 7e-41 Identities = 340/493 (69%), Gaps = 7/493 (1%) Strand=Plus/Minus Query 110552 TATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAAACTCTGGAGG 110611 |||||| |||||||||||| | || || | |||| | || |||||||| ||||||| Sbjct 9511 TATTGATGGTATTTATGATACCCTCAAGACATGTGCTATGATCTCTAAAAATGCTGGAGG 9452 Query 110612 AATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCAACAGCGAAGGG 110671 |||||| | || |||| || || | | || ||| | ||||| | || || Sbjct 9451 TATTGGTCTCAACATTCACAGAATCCGTGCCACTGGTGCATACATCGCCGGTACCAACGG 9392 Query 110672 TG-CTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGA 110730 | || |||| | | | || || ||| || |||| |||||| ||||||| | ||| || Sbjct 9391 TAACTCCAACGGCA-TCGTACCCATGCTACGAGTTTTCAACAACACTGCTAGATACGTCG 9333 Query 110731 ATCAAGGTGGTAAGA---GAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAG 110787 | |||||||| || | | ||| ||||||| ||||||| || |||||||| ||| Sbjct 9332 ACCAAGGTGGAAACAAGCGTCCTGGTGCATTTGCAGTCTATCTTGAGCCTTGGCACGCAG 9273 Query 110788 ATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTG 110847 || | || || ||| | || ||||| || || || || |||||| | || |||| Sbjct 9272 ATGTTTTCGAGTTCCTGGACCTTCGAAAGAACCATGGCAAGGAAGAAGTCCGCGCCCGTG 9213 Query 110848 ATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATG-GC 110906 || | || ||||| |||||||| | ||| | |||||||| |||||| || | || | | Sbjct 9212 ATCTTTTCTATGCCTTGTGGATTCCGGATCTCTTCATGAAGCGTGTTGAAAAGAACGCGG 9153 Query 110907 ATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAG 110966 || ||| | || ||||| || || | |||||| | ||||||||||||| | ||| Sbjct 9152 AT-TGGACACTAATGTGCCCCAATGAATGTCCTGGGTTGGCTGATGTATATGGCGACGAG 9094 Query 110967 TTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAACAAATTCCAGCT 111026 ||||||| || || || | ||||| || ||||| | |||||| || ||| Sbjct 9093 TTTGAAGCTCTCTATGAGAGTTATGAGAAGGAAGGTAGAGGTCGCAAGACCATCAAAGCC 9034 Query 111027 CAAGAACTTTGGT 111039 ||| | ||||||| Sbjct 9033 CAAAAGCTTTGGT 9021 >seq3070 Length=35956 Score = 122 bits (134), Expect = 2e-22 Identities = 159/220 (72%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 131787 TTCCTGCAATTAAAAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTA 131846 ||||| ||||| |||||||| || |||||| | | |||||||||||| | | ||| Sbjct 29033 TTCCTTGCATTAAGAAGAAAGCCGACTGGGCTGTCAGATGGATTCAAGACAAAAACTCTA 28974 Query 131847 ATTTTTCTACAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTT 131906 ||| || | || || ||||||||| |||||| || || ||||| || | | Sbjct 28973 CCTTTGCTCAGCGTCTGGTTGCTTTTGCTGCTGTTGAGGGCATCTTCTTCAGTGGATCAT 28914 Query 131907 TCTGTGCTATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATC 131966 || | ||||||| ||||| ||||||||||| |||||| |||| ||| | || |||||| Sbjct 28913 TCGCTTCTATCTTCTGGCTCAAGAAGCGTGGCTTGATGGCTGGTCTCACTTTCTCCAATG 28854 Query 131967 AATTCATCTCGAGAGATGAAGCATTGCATACTGAATTTGC 132006 | ||||||| | ||||||| | ||||| || || || Sbjct 28853 AGCTCATCTCCCGTGATGAAGGTCTCCATACCGACTTCGC 28814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186757906199210