Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08- 07] 3,610 sequences; 36,184,363 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq443 107 1e-18 seq1292 102 5e-17 >seq443 Length=6205 Score = 107 bits (118), Expect = 1e-18 Identities = 156/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593 ||| | |||||| || | ||||||||| || || ||||||||||| || || || | | Sbjct 2885 ACGAAGCACCAAGTGCAAAGTGCTCTCCTTCTGAATGTTGTAATCAGAAAGAGTTCTGCC 2944 Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653 || ||||| || ||||| ||||| ||||| ||||| || || | || | ||| || || Sbjct 2945 ATCCTCCAACTGCTTTCCAGCAAAGATCAATCGCTGTTGGTCCGGTGGAATACCCTCCTT 3004 Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGA 33712 ||| ||| || || | |||| ||| | ||| || |||||||| || | || | Sbjct 3005 GTCTTGAATCTT-TGACTTGACATTGTCAATGGTATCTGACGATTCCACTTCCAATGTAA 3063 Query 33713 TCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || || || || || || || || |||||||||||| Sbjct 3064 TGGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCATA 3101 >seq1292 Length=3705 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | ||||| || |||||| || ||||| |||||||| ||||| Sbjct 1944 CCACCACGTAGACGAAGGACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAA 2003 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || |||||| | || || | ||| || ||||| || |||| ||| |||||||| | || Sbjct 2004 AGGGTGCGTCCATCTTCGAGTTGCTTGCCGGCGAAGATCAGACGTTGCTGATCAGGTGGG 2063 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || || || | ||| ||| | ||| || ||||| || Sbjct 2064 ATTCCCTCCTTGTCCTGGATCTTGGACTTGA-CATTGTCGATGGTATCAGAGGATTCAAC 2122 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| |||||||| || | ||||| || ||||||||||| Sbjct 2123 CTCGAGGGTGATGGTTTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 2170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328689538051200