Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08-
07] 3,610 sequences; 36,184,363 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq443 98.7 9e-16
>seq443
Length=6205
Score = 98.7 bits (108), Expect = 9e-16
Identities = 99/129 (77%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961
||| | ||| | ||||| || | | | || |||||||| |||||||||||||||| |||
Sbjct 3335 ACGAAGGCGGAGCACCAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAGGGT 3394
Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021
|| ||||||||| |||||||| | |||| | ||| |||||||| ||||| |||||
Sbjct 3395 GCGACCATCTTCGAGTTGTTTACCAGCGAAGATCAAACGTTGTTGATCCGGAGGAATGCC 3454
Query 132022 TTCTTTATC 132030
|| || ||
Sbjct 3455 CTCCTTGTC 3463
Score = 84.2 bits (92), Expect = 2e-11
Identities = 79/101 (78%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989
||||| |||||||||||||||||||||| |||||| |||||| || ||||| || |
Sbjct 3647 GACTCCTTTTGAATGTTGTAGTCGCTCAAGGTACGGCCATCTTCAAGTTGTTTGCCCGCG 3706
Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030
|||| | |||||||| || || || || || || |||||
Sbjct 3707 AAGATCAAGCGCTGTTGGTCCGGGGGAATTCCCTCCTTATC 3747
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476589692919600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |