Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08-
07] 3,610 sequences; 36,184,363 total letters
Query= NC_026268.1
Length=139132
Score E
Sequences producing significant alignments: (Bits) Value
seq1292 86.0 6e-12
seq443 82.4 7e-11
>seq1292
Length=3705
Score = 86.0 bits (94), Expect = 6e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233
|||||| | || || ||||| | || || ||| | ||||| |||| || ||| ||
Sbjct 2171 CATGCAGATCTTCGTCAAAACCCTCACGGGTAAAACCATCACCCTCGAGGTTGAATCCTC 2112
Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293
||||| ||||| | || || || || || || ||||| || || || |||||
Sbjct 2111 TGATACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCACCTGATCA 2052
Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353
|||| | || || | || |||||| ||||||||||||| | | | ||| |||||
Sbjct 2051 GCAACGTCTGATCTTCGCCGGCAAGCAACTCGAAGATGGACGCACCCTTTCCGACTACAA 1992
Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGT 25383
|| ||||| |||||||| |||| || ||
Sbjct 1991 CATCCAAAAGGAATCCACTCTTCACTTGGT 1962
>seq443
Length=6205
Score = 82.4 bits (90), Expect = 7e-11
Identities = 122/173 (71%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 25199 ACCGGAAAATCGATCACGATCGAAGTCGAAGCCAACGATACTATCGAGCAAGTAAAACAA 25258
||||| || | ||||| |||| ||||| ||| |||||||||||| | |||||
Sbjct 3816 ACCGGCAAGACCATCACCCTCGAGGTCGAGTCCAGCGATACTATCGACAACGTAAAGAGC 3757
Query 25259 AAAATTACCGATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAA 25318
|| ||| ||||| ||||| || || || || || || | | || | || ||||||
Sbjct 3756 AAGATTCAGGATAAGGAGGGAATTCCCCCGGACCAACAGCGCTTGATCTTCGCGGGCAAA 3697
Query 25319 CAACTCGAAGATGATAGAAATGTCAGCGATTACAATATTCAAAAAGAATCCAC 25371
||||| ||||||| | | | ||||| ||||| |||||||| || || ||
Sbjct 3696 CAACTTGAAGATGGCCGTACCTTGAGCGACTACAACATTCAAAAGGAGTCTAC 3644
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445074315115200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |