Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08-
07] 3,610 sequences; 36,184,363 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq3070 116 5e-20
>seq3070
Length=35956
Score = 116 bits (128), Expect = 5e-20
Identities = 209/300 (70%), Gaps = 13/300 (4%)
Strand=Plus/Minus
Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834
||| ||| |||||||| |||||||||||||| || || ||||| || || ||| |||||
Sbjct 29421 GATCTGGCAAATGTAC-AAAAAGGCCGAGGCATCTTTCTGGACAGCAGAAGAGATCGACT 29363
Query 1455835 TCG----GCGCCGACACGGTCCACTGGG-TGTCG--CTGAGCGACGACGAGCGCCATTTC 1455887
| | || |||| | ||| | | || | || || |||||| |||||
Sbjct 29362 TGTCAAAGGACCTTCACGAT----TGGAATAACAAACTCAATGATGATGAGCGCTATTTC 29307
Query 1455888 ATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGC 1455947
||| |||||||||| | || ||||| || ||| || || || ||||||||| |
Sbjct 29306 ATCTCTCACGTCCTCG-CATTCTTCGCAGCATCCGACGGAATAGTCAACGAGAACCTTGT 29248
Query 1455948 CGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGAT 1456007
|| ||||| | || || ||| | || ||||| |||| || ||||| ||||| ||
Sbjct 29247 CGAGCGCTTCAGTGGTGAAGTTCAAATCCCCGAGGCTCGTTGCTTCTACGGTTTCCAAAT 29188
Query 1456008 CGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA 1456067
|| || || |||||||| ||||| ||||| ||||| ||||| || ||| | |||||
Sbjct 29187 TATGATGGAGAATATCCACTCCGAAACATACTCTCTCCTCATCGATACATACATTAAGGA 29128
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177463008864820
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |