Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08- 07] 3,610 sequences; 36,184,363 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq3070 116 5e-20 >seq3070 Length=35956 Score = 116 bits (128), Expect = 5e-20 Identities = 209/300 (70%), Gaps = 13/300 (4%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| |||||||| |||||||||||||| || || ||||| || || ||| ||||| Sbjct 29421 GATCTGGCAAATGTAC-AAAAAGGCCGAGGCATCTTTCTGGACAGCAGAAGAGATCGACT 29363 Query 1455835 TCG----GCGCCGACACGGTCCACTGGG-TGTCG--CTGAGCGACGACGAGCGCCATTTC 1455887 | | || |||| | ||| | | || | || || |||||| ||||| Sbjct 29362 TGTCAAAGGACCTTCACGAT----TGGAATAACAAACTCAATGATGATGAGCGCTATTTC 29307 Query 1455888 ATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGC 1455947 ||| |||||||||| | || ||||| || ||| || || || ||||||||| | Sbjct 29306 ATCTCTCACGTCCTCG-CATTCTTCGCAGCATCCGACGGAATAGTCAACGAGAACCTTGT 29248 Query 1455948 CGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGAT 1456007 || ||||| | || || ||| | || ||||| |||| || ||||| ||||| || Sbjct 29247 CGAGCGCTTCAGTGGTGAAGTTCAAATCCCCGAGGCTCGTTGCTTCTACGGTTTCCAAAT 29188 Query 1456008 CGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA 1456067 || || || |||||||| ||||| ||||| ||||| ||||| || ||| | ||||| Sbjct 29187 TATGATGGAGAATATCCACTCCGAAACATACTCTCTCCTCATCGATACATACATTAAGGA 29128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177463008864820