Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08- 07] 3,610 sequences; 36,184,363 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq443 127 2e-24 seq1292 95.1 1e-14 >seq443 Length=6205 Score = 127 bits (140), Expect = 2e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 |||||| || || || |||||||| |||||||||||||| | | |||| | || || Sbjct 2891 CACCAAGTGCAAAGTGCTCTCCTTCTGAATGTTGTAATCAGAAAGAGTTCTGCCATCCTC 2950 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 || |||||| || ||||| ||||| ||||| ||||||| |||| | ||||||||| Sbjct 2951 CAACTGCTTTCCAGCAAAGATCAATCGCTGTTGGTCCGGTGGAATACCCTCCTTGTCTTG 3010 Query 35647 GATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 |||||| ||| | | | | | || || ||||||||| |||| || || || || Sbjct 3011 AATCTTTGACTTGACATTGTCAATGGTATCTGACGATTCCACTTCCAATGTAATGGTCTT 3070 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || |||||||| || || || |||||||| Sbjct 3071 TCCGGTCAAAGTCTTGACGAAGATCTGCAT 3100 Score = 91.5 bits (100), Expect = 1e-13 Identities = 123/169 (73%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||||||||||||||| ||| |||||| || | || || || || || ||||| || Sbjct 3649 CTCCTTTTGAATGTTGTAGTCGCTCAAGGTACGGCCATCTTCAAGTTGTTTGCCCGCGAA 3708 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||| ||||| ||||||| |||| | |||||| ||| ||||| ||| | || Sbjct 3709 GATCAAGCGCTGTTGGTCCGGGGGAATTCCCTCCTTATCCTGAATCTTGCTCTTTA-CGT 3767 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGT 35712 || | | || ||||| || || ||||| | ||||| || || || || Sbjct 3768 TGTCGATAGTATCGCTGGACTCGACCTCGAGGGTGATGGTCTTGCCGGT 3816 >seq1292 Length=3705 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||||| | | ||||| || | || |||||||| |||||||| |||| Sbjct 1944 CCACCACGTAGACGAAGGACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAA 2003 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || | || || || ||||| || || || |||| || ||||| || | || Sbjct 2004 AGGGTGCGTCCATCTTCGAGTTGCTTGCCGGCGAAGATCAGACGTTGCTGATCAGGTGGG 2063 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | |||||||||| |||||| ||| | | | | | || || ||||| ||| Sbjct 2064 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTATCAGAGGATTCAACC 2123 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||||| ||||||||||| | ||||| || || |||||||| Sbjct 2124 TCGAGGGTGATGGTTTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 2170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450773257938800