Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08-
07] 3,610 sequences; 36,184,363 total letters
Query= NC_026922.1
Length=157977
Score E
Sequences producing significant alignments: (Bits) Value
seq1292 129 6e-25
seq443 127 2e-24
>seq1292
Length=3705
Score = 129 bits (142), Expect = 6e-25
Identities = 151/204 (74%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569
||| || |||||||||||||| |||||||||||| || |||| | || ||||| ||
Sbjct 1967 GTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGTCCATCTTCGAGTTG 2026
Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629
||||| || || |||| ||| |||||||| || || || || || || || || || ||
Sbjct 2027 CTTGCCGGCGAAGATCAGACGTTGCTGATCAGGTGGGATTCCCTCCTTGTCCTGGATCTT 2086
Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689
||||| ||| | || || || ||||| || ||||| || ||||||||||| ||
Sbjct 2087 GGACTTGACATTGTCGATGGTATCAGAGGATTCAACCTCGAGGGTGATGGTTTTACCCGT 2146
Query 134690 TAAAGTTTTAACGAAAATTTGCAT 134713
| ||||| ||||| || |||||
Sbjct 2147 GAGGGTTTTGACGAAGATCTGCAT 2170
>seq443
Length=6205
Score = 127 bits (140), Expect = 2e-24
Identities = 153/208 (74%), Gaps = 0/208 (0%)
Strand=Plus/Plus
Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555
|| || | ||| | ||| || |||||||| ||||| ||||||||||||| | |||| ||
Sbjct 3339 AGGCGGAGCACCAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAGGGTGCGA 3398
Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615
|| ||||| ||||| || || || |||||||| || ||||| || || ||||| ||
Sbjct 3399 CCATCTTCGAGTTGTTTACCAGCGAAGATCAAACGTTGTTGATCCGGAGGAATGCCCTCC 3458
Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675
|| || || || || ||||| ||| | ||||||||||| || || || |||||
Sbjct 3459 TTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGACGACTCGACCTCAAGAGTG 3518
Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGA 134703
||||| || || || | ||| || ||||
Sbjct 3519 ATGGTCTTGCCAGTAAGAGTCTTGACGA 3546
Score = 105 bits (116), Expect = 7e-18
Identities = 140/192 (73%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 134523 TCCTTTTGAATGTTGTAGTCGCCAACGGTG-TGAGAGTCGTCGAGCTGTTTGCCTGCAAA 134581
||||| ||||||||||| || || || || | || || | ||| || || |||||
Sbjct 2910 TCCTTCTGAATGTTGTAATCAGAAAGAGTTCTGCCA-TCCTCCAACTGCTTTCCAGCAAA 2968
Query 134582 AATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGC 134641
||||| ||||| || || || || || || || || |||||||| ||| |||||
Sbjct 2969 GATCAATCGCTGTTGGTCCGGTGGAATACCCTCCTTGTCTTGAATCTTTGACTTGACATT 3028
Query 134642 GTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAAC 134701
||| | || || ||||||||||| || | |||||||| || ||||| ||||| || ||
Sbjct 3029 GTCAATGGTATCTGACGATTCCACTTCCAATGTAATGGTCTTTCCGGTCAAAGTCTTGAC 3088
Query 134702 GAAAATTTGCAT 134713
||| || |||||
Sbjct 3089 GAAGATCTGCAT 3100
Score = 91.5 bits (100), Expect = 1e-13
Identities = 131/185 (71%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564
||||| || || || || |||||||||||||||||||||| | ||| | || ||
Sbjct 3632 ACGAGATGGAGAGTAGACTCCTTTTGAATGTTGTAGTCGCTCAAGGTACGGCCATCTTCA 3691
Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624
|| |||||||| || || ||||| ||||| || || || || || || || || || |||
Sbjct 3692 AGTTGTTTGCCCGCGAAGATCAAGCGCTGTTGGTCCGGGGGAATTCCCTCCTTATCCTGA 3751
Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684
|| || || || ||| | || ||| || || || ||||| || ||||| ||
Sbjct 3752 ATCTTGCTCTTTACGTTGTCGATAGTATCGCTGGACTCGACCTCGAGGGTGATGGTCTTG 3811
Query 134685 CCGGT 134689
|||||
Sbjct 3812 CCGGT 3816
Score = 82.4 bits (90), Expect = 8e-11
Identities = 140/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGT 134570
|| || ||||| || || || ||||||||||| | ||| | || || || ||
Sbjct 3126 TGCAGTGTGGACTCTTTCTGGATGTTGTAGTCTGATAGAGTGCGGCCATCCTCAAGTTGC 3185
Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630
|| || ||||| || | ||| ||||| || || || || || || || |||||||| |||
Sbjct 3186 TTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGGATACCCTCCTTATCTTGAATCTTT 3245
Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690
||| || ||| | || || ||||| || || || | || || || || |||||
Sbjct 3246 GATTTCACGTTGTCGATGGTATCTGACGACTCAACCTCCAATGTGATTGTCTTTCCGGTA 3305
Query 134691 AAAGTTTTAACGAAAATTTGCAT 134713
| || || ||||| ||||||||
Sbjct 3306 AGTGTCTTCACGAAGATTTGCAT 3328
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 505375593897200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |