Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08- 07] 3,610 sequences; 36,184,363 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq60 259 7e-64 seq3070 107 3e-18 >seq60 Length=14677 Score = 259 bits (286), Expect = 7e-64 Identities = 1143/1780 (64%), Gaps = 41/1780 (2%) Strand=Plus/Plus Query 68374 GTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGA 68433 || |||||||| |||| |||||||| | ||||| || |||||||| ||||| || ||| Sbjct 7937 GTGAACTGAATAGGTGCGGATGCGGCCATGGTACGGAGGTAGTACATTCCGGTCTTGAGA 7996 Query 68434 CCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATA 68493 || | |||| ||| ||||||||| || | ||| | || || || Sbjct 7997 CCCAATTTCCAACCGGCGAAATGCATGGAAGTAATCTTGCCCATTGTGGGGTCTTTCATG 8056 Query 68494 TGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATA 68553 ||||| ||||| ||||| || || | || || || | ||| || ||||||| | | Sbjct 8057 TGAATGTTCATTGATTGTGACTGGTCAACAAAGGCACCACGATCAGCGGCCATTTGAACA 8116 Query 68554 ATACTCTTTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAAGG 68613 || | ||||| ||| ||||| | ||||| ||| ||||| ||| |||||| | Sbjct 8117 ATTGTTCGTTGAGAAATCTCCCAGACGGTCTTGTAAAGTGCCTTGATGTCAGCTGGAATG 8176 Query 68614 CTCGTA---TTTTGAATGGATCCACCATCGGATATAATTATATTCTTGATCTCATCATTC 68670 | | | |||||||| || ||||| || | || || ||||| || | || | Sbjct 8177 TTGGGAATGTTTTGAATAGAACCACCGTCAGCGATGATGCGGTTCTTCATGTTGTCTGAC 8236 Query 68671 CACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCA 68730 || ||| | || | | | | || || || ||||| | ||| ||||| ||| Sbjct 8237 CATAATCCCATGTCGACAAGATCCTTGAGCAGCCATGGGTTAACAACTTGGAATTCTCCA 8296 Query 68731 GATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCC 68790 | || || | ||||| ||| || ||| || |||||||| | | || || || Sbjct 8297 GCCAAGACACGACGAGAGTAGATGTTAGAAGTGTATGGTTCAAAGCACTCGTTGAAACCG 8356 Query 68791 AGAATTTGAGCAGTTGATG-CAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 68849 |||||||||| || || || | ||||||||||| || || | ||||| || | | ||| Sbjct 8357 AGAATTTGAG-AGGTGCTGGCTGTTGGCATAGGAGCAACGAGCAAACTGTTGCGGACACC 8415 Query 68850 ATGTGTTATGATTT-TATCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACAT 68908 ||| | |||| | |||| || | | ||| |||||||| || | ||| ||| Sbjct 8416 GTGTTGTTTGATGGATTTCTTCAAGCTATC-CCAGTCCCAAAGGTCGGTAGGTGTAACTC 8474 Query 68909 TCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCATTATATGTTTCATAAG 68968 ||| | ||||||||| || || || || ||| || | || || ||||| | Sbjct 8475 CCCACATATCGTATTGAAGTTCGCCCTTCGAGACAGGTGAGCCTTCGTAAGTCTCATAGG 8534 Query 68969 GTCCTTCCTGTTCAGCTAGTTCACAACTTGCC-TCT-AATGCACCGTAATAAATTGTTTC 69026 || || | ||| | || |||| | | | || ||| ||| ||||| ||||| Sbjct 8535 TACCCAACTCCTTAGCAA--TCTCAACGGACGATGTCAAAGCAGCGTGGTAAATAGTTTC 8592 Query 69027 GAAAATCTTCTTATTGAGAT-CTTGTGCTTCTAGACTATCGAATGGATAATGTAAAAG-- 69083 ||| || | | ||||| | |||| ||||| | || ||||| |||| || || Sbjct 8593 GAAGATTTGAATGTTGAGGTGCTTG-GCTTCAGGTGATTCAAATGG-TAATCGAAGAGCC 8650 Query 69084 AATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGA 69143 || ||| ||||| || | || ||||| || | | ||||||||| ||| | ||| | Sbjct 8651 AAGAAA-GCATCGGCAAGACCTTGAACACCGACAGCGATAGGTCGATGACGGAAATT-GC 8708 Query 69144 ACTTTCAG-CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATTTCGGA 69202 ||||| | | ||||| | || || || || || || || || || || | |||| || Sbjct 8709 TCTTTCTGGCCTCTGGGACGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAGTTTCTGA 8768 Query 69203 CTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATCGTCCATCTATAA----CA 69258 | || |||| | || || | || || | ||||| | ||| || | | || Sbjct 8769 CAACGACTTGAGTAACCTCGTGAAGCTTTTGGAAATCGTAAGTTCCCTCATTCATGTCCA 8828 Query 69259 AACATATTC--AGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCAT 69316 | || || || || | || || | ||||| || || |||| | | | Sbjct 8829 CAAATGTTGGGAGAGCAATGGAAGCCAAGTTACAGCAAGCGACTTCATCTGGGGCAGAGT 8888 Query 69317 ATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTAC 69376 ||| | || ||||| || | ||| | || || || || || | || || | Sbjct 8889 ATTCGACAATTTCTGTGCACAAATTGGAGCTGCGAATGGTGCCGAGGTTCTTTTGGTTGC 8948 Query 69377 TCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATT 69436 |||| ||||| || || ||||||||||| || || ||| | || || || | |||| | Sbjct 8949 TCTTCTTGTTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGTCTCGGTTTGAGCCT 9008 Query 69437 CGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAACG-CTTC--TCTT 69493 ||| ||| || | ||||| || || || ||||||| || || | || | Sbjct 9009 CGAGAATGGAGTACCAAAGCTTTTGGGCTTTGAT---GGTCTTGCGACCTCTACCTTCCT 9065 Query 69494 TTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGAC 69553 | ||||| ||| || ||| || || || || | |||||| |||| ||||||| Sbjct 9066 TCTCATAACTCTCATAGAGAGCTTCAAACTCGTCGCCATATACATCAGCCAACCCAGGAC 9125 Query 69554 ATTCATTTGGACACATCAATGACCACACATCATCATCCTT---AACTCGTTTCATAAATA 69610 ||||||| || ||||| | || ||| ||| | | ||| ||| || ||||| || | Sbjct 9126 ATTCATTGGGGCACATTAGTGTCCA---ATCCGCGTTCTTTTCAACACGCTTCATGAAGA 9182 Query 69611 GATCGGGAATCCAAAGAGCTATA-AAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTA 69669 |||| |||||||| | || ||| || ||||| | || | |||||| || || Sbjct 9183 GATCCGGAATCCACA-AGGCATAGAAAAGATCACGGGCGCGGACTTCTTCCTTGCCATGG 9241 Query 69670 ttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCC 69729 || ||| ||| || || ||||| | || ||| | ||||| || || ||||| | || Sbjct 9242 TTCTTTCGAAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGACTGCA 9301 Query 69730 ATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACT 69789 | | || || || || ||||| || || || | |||||| |||||||| || | ||| Sbjct 9302 AATGCACCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTGTTGAAAACT 9361 Query 69790 CTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTT 69849 | ||||| || | || || || || ||||| || || || | || || || | Sbjct 9362 CGTAGCATGGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATGCACCAGTG 9421 Query 69850 GCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAA 69909 || || || | ||| ||||| || ||||| || |||||||||| | |||||| Sbjct 9422 GCACGGATTCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATCATAGCACAT 9481 Query 69910 CGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAG 69969 || | || ||||| ||||| || || || || || |||| | || || || || Sbjct 9482 GTCTTGAGGGTATCATAAATACCATCAATACTGTCCTCCTTCATATCAATGAGGAAGCAT 9541 Query 69970 CTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAAC 70029 || | ||| ||| || || || || | |||||| || ||||| ||||| Sbjct 9542 GATGAAAGCTGAGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGTGTGAAG 9601 Query 70030 CATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATC-CCACTGATGAAT 70088 |||| | || | || ||||| || ||||| || || ||||| ||| | ||||| Sbjct 9602 TATTTGTTGGACATAAGGTTGTAGGTCTCAATGGCGCTCTCGATATCGTCACCG-TGAAT 9660 Query 70089 TCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCT 70128 || | || |||||||| | ||| || || || |||||| Sbjct 9661 ACCAACGGCAACACGCATGATCATTTGTTGTGGACGTTCT 9700 >seq3070 Length=35956 Score = 107 bits (118), Expect = 3e-18 Identities = 304/461 (66%), Gaps = 16/461 (3%) Strand=Plus/Plus Query 39313 CATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTC 39372 |||||| || || ||||| |||||||| | |||||||| || || || |||||| | Sbjct 28507 CATAACACCAGCCTTCTGGTAGTCACCAACTCTCTTCTCGAAGAAGTTTGTCTTGCCTGC 28566 Query 39373 CAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAt---ttttttttA-- 39427 | || || || |||||||| || || || || | | || || || | ||| Sbjct 28567 TAGGGAGATGTTCTCCATGAAGTCGAATGGGTTGGCAGACTTGTACACCTTCTCGTTACC 28626 Query 39428 AATCCTAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCAT-TTC 39486 || || | || | | ||| || || || || |||||| ||||||| ||| Sbjct 28627 AAGAGCAACTAGGAGA-----CGATCGGCGACGAACTCGATGTATTGCTTCATCAAGTTC 28681 Query 39487 ACAATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTC 39546 | ||||| || | ||| | || |||||||| || | || |||| |||||| || Sbjct 28682 GCG-TTCATGCCAAGAAGTGCACAAGGAAGAGCCTCGGTCAAGAATTCTTGTTCGATCTC 28740 Query 39547 TACGGCCTCTGTTATTATCGATGTT--ACTACCTCATCACTCGGTGGATGCAATAAATGT 39604 || |||||||| || | || || || ||| | || || | ||| || || Sbjct 28741 GACAGCCTCTGTGATGAC--ATCTTGGACAGCCTGCTTGCTTGGACGGTGCTTCAAGTGG 28798 Query 39605 TTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTA 39664 || | | ||| |||||||| ||| || || ||||| | || | || || Sbjct 28799 GAGAAGAGGAGGCACGCGAAGTCGGTATGGAGACCTTCATCACGGGAGATGAGCTCATTG 28858 Query 39665 GAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT 39724 || || ||||| |||| ||| | |||||||| |||||||| || || | ||| || ||| Sbjct 28859 GAGAAAGTGAGACCAGCCATCAAGCCACGCTTCTTGAGCCAGAAGATAGAAGCGAATGAT 28918 Query 39725 CCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAG 39765 ||| ||||||||||| || || || ||||| ||||| || Sbjct 28919 CCACTGAAGAAGATGCCCTCAACAGCAGCAAAAGCAACCAG 28959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686877803240400