Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08- 07] 3,610 sequences; 36,184,363 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq417 120 2e-22 >seq417 Length=25006 Score = 120 bits (132), Expect = 2e-22 Identities = 290/438 (66%), Gaps = 11/438 (3%) Strand=Plus/Minus Query 19441 AATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGACGTTTG 19500 |||||||||||| | ||||||| ||||| || || || ||||||||| | ||| | Sbjct 12096 AATGGTCCTGAAGTACTAAATAAGTATGTTGGACAGTCTGAAGAAAATATCCGAAAGCTC 12037 Query 19501 TTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCG-CAAAAGTTCTTTGCACATTAT 19559 || || || || || |||| | | || | | || | | | ||| ||| ||||| || Sbjct 12036 TTCGCAGATGCAGA-GAAGGAGTACAAAGAGAAAGGAGACGAGAGTGGTTTACACATCAT 11978 Query 19560 AATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTC---------TGGTGTAAA 19610 || | || ||| | ||||| | |||||||||||||| ||| | || Sbjct 11977 CATCTTCGACGAACTCGACGCTGTTTGTAAGCAAAGAGGAAGCGGAGCAGGTGGCGGAAC 11918 Query 19611 TGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTAACCAACT 19670 || || ||||| |||||||||||| | ||||| || | || |||||| |||| || Sbjct 11917 CGGCGTCGGTGACAGTGTTGTCAATCAGTTGCTGTCCAAGCTCGATGGTGTTGACCAGCT 11858 Query 19671 GAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGCGCCTTATT 19730 || || ||| | ||||||| ||||||||| | |||| | || || || ||| | Sbjct 11857 CAACAACATTCTCCTTATTGGAATGACTAATCGGATGGATATGATTGATGATGCTTTACT 11798 Query 19731 ACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGTGGACGTGT 19790 || || || || ||||| | | || ||||| ||| || |||||| || | | Sbjct 11797 TCGTCCTGGACGTTTGGAGGTGCATATGGAAATCTCCTTGCCGGATGAAGCGGGTAGAGC 11738 Query 19791 GGAAATTTTAAACATACATACATCAACCATGCGACAAAATAACCTTTTAAATGACGATGT 19850 | | ||| | || || || ||||| | ||||| | || ||| || | || ||||| Sbjct 11737 GCAGATTCTCAAGATTCACACATCGAAGATGCGCGACAACAACGTTATGGATCCAGATGT 11678 Query 19851 AGATCTAGAAGAAATTGC 19868 | | | | |||| |||| Sbjct 11677 AAACGTTGCAGAACTTGC 11660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397438513178050