Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08-
07] 3,610 sequences; 36,184,363 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq417 120 2e-22
>seq417
Length=25006
Score = 120 bits (132), Expect = 2e-22
Identities = 290/438 (66%), Gaps = 11/438 (3%)
Strand=Plus/Minus
Query 19441 AATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGACGTTTG 19500
|||||||||||| | ||||||| ||||| || || || ||||||||| | ||| |
Sbjct 12096 AATGGTCCTGAAGTACTAAATAAGTATGTTGGACAGTCTGAAGAAAATATCCGAAAGCTC 12037
Query 19501 TTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCG-CAAAAGTTCTTTGCACATTAT 19559
|| || || || || |||| | | || | | || | | | ||| ||| ||||| ||
Sbjct 12036 TTCGCAGATGCAGA-GAAGGAGTACAAAGAGAAAGGAGACGAGAGTGGTTTACACATCAT 11978
Query 19560 AATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTC---------TGGTGTAAA 19610
|| | || ||| | ||||| | |||||||||||||| ||| | ||
Sbjct 11977 CATCTTCGACGAACTCGACGCTGTTTGTAAGCAAAGAGGAAGCGGAGCAGGTGGCGGAAC 11918
Query 19611 TGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTAACCAACT 19670
|| || ||||| |||||||||||| | ||||| || | || |||||| |||| ||
Sbjct 11917 CGGCGTCGGTGACAGTGTTGTCAATCAGTTGCTGTCCAAGCTCGATGGTGTTGACCAGCT 11858
Query 19671 GAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGCGCCTTATT 19730
|| || ||| | ||||||| ||||||||| | |||| | || || || ||| |
Sbjct 11857 CAACAACATTCTCCTTATTGGAATGACTAATCGGATGGATATGATTGATGATGCTTTACT 11798
Query 19731 ACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGTGGACGTGT 19790
|| || || || ||||| | | || ||||| ||| || |||||| || | |
Sbjct 11797 TCGTCCTGGACGTTTGGAGGTGCATATGGAAATCTCCTTGCCGGATGAAGCGGGTAGAGC 11738
Query 19791 GGAAATTTTAAACATACATACATCAACCATGCGACAAAATAACCTTTTAAATGACGATGT 19850
| | ||| | || || || ||||| | ||||| | || ||| || | || |||||
Sbjct 11737 GCAGATTCTCAAGATTCACACATCGAAGATGCGCGACAACAACGTTATGGATCCAGATGT 11678
Query 19851 AGATCTAGAAGAAATTGC 19868
| | | | |||| ||||
Sbjct 11677 AAACGTTGCAGAACTTGC 11660
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397438513178050
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |