Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08- 07] 3,610 sequences; 36,184,363 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq60 140 3e-28 seq443 107 2e-18 >seq60 Length=14677 Score = 140 bits (154), Expect = 3e-28 Identities = 330/495 (67%), Gaps = 5/495 (1%) Strand=Plus/Plus Query 131603 GGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAAC 131662 |||||||| |||| |||||||| | ||| | |||||| |||||| |||||||| || Sbjct 9122 GGACATTCATTGGGGCACATTAGTGTCCAATCCGCGTTCTTTTCAACACGCTTCATGAAG 9181 Query 131663 AAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATA 131722 | |||||| | ||| || || || || ||||| | || ||||| | || || Sbjct 9182 AGATCCGGAATCCACAAGGCATAGAAAAGATCACGGGCGCGGACTTCTTCCTTGCC-ATG 9240 Query 131723 AtttttttCAAATTTAAA-AAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGC 131781 || ||| || | | || || |||| || || ||||| || || | ||| ||||| Sbjct 9241 GTTCTTTCGAAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGACTGC 9300 Query 131782 CATTGCGCCTTTGCGCTTA---CCGCCTTGATTAACATGACGAACCATGTTGTTGTATAC 131838 | ||| || ||||| || ||||| | || | | | | |||||||| | || Sbjct 9301 AAATGCACCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTGTTGAAAAC 9360 Query 131839 GCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATGTAGCTGCCATT 131898 || | |||||| | | ||||||| ||| || ||||| | ||||| ||| | Sbjct 9361 TCGTAGCATGGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATGCACCAGT 9420 Query 131899 GGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCCGCCGTATTTAGAGATTAGTGCGCA 131958 ||| | |||| |||||| |||||| ||||||||||| | | ||||||||| | || || Sbjct 9421 GGCACGGATTCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATCATAGCACA 9480 Query 131959 TTTGGTTAGAGTGTTATAGATACCTTCCACGCTGTCCGCGGCAATGTCGACTAAAAAGCA 132018 | | | || || | ||| ||||| || | |||||| | || || | | ||||| Sbjct 9481 TGTCTTGAGGGTATCATAAATACCATCAATACTGTCCTCCTTCATATCAATGAGGAAGCA 9540 Query 132019 AGAGGACAACTGTTGGTGAAATGTGCCGGCTGAAAACAATGTGGGGCTGGCGTGTGTAAA 132078 || || | ||| || ||| || || || || | ||| ||| ||||||||| || Sbjct 9541 TGATGAAAGCTGAGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGTGTGAA 9600 Query 132079 AAGTTTTTTGGCCAT 132093 ||| |||| ||| Sbjct 9601 GTATTTGTTGGACAT 9615 >seq443 Length=6205 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | || || |||||||| || ||||||||||||| | |||| | |||||| Sbjct 3348 ACCAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAGGGTGCGACCATCTTCG 3407 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 || |||||||| ||| | || | ||| ||||||||||| || | ||||| || || | Sbjct 3408 AGTTGTTTACCAGCGAAGATCAAACGTTGTTGATCCGGAGGAATGCCCTCCTTGTCCTGG 3467 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| || | | | || | ||||| | | || || || ||||| || | ||| Sbjct 3468 ATCTTGGACTTGACGTTGTCGATGGTGTCGGACGACTCGACCTCAAGAGTGATGGTCTTG 3527 Query 27219 CCCGTCAGAGTTTTCAC 27235 || || ||||| || || Sbjct 3528 CCAGTAAGAGTCTTGAC 3544 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| || |||||||| ||||||||||||| | | || | ||||| || ||||| || Sbjct 3644 GTAGACTCCTTTTGAATGTTGTAGTCGCTCAAGGTACGGCCATCTTCAAGTTGTTTGCCC 3703 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | || | |||||||| ||||| || | ||||| ||||| |||||| | || Sbjct 3704 GCGAAGATCAAGCGCTGTTGGTCCGGGGGAATTCCCTCCTTATCCTGAATCTTGCTCTTT 3763 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGT 27223 | | | || | ||| || ||| || || || || || || | ||||| || Sbjct 3764 ACGTTGTCGATAGTATCGCTGGACTCGACCTCGAGGGTGATGGTCTTGCCGGT 3816 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||||||| | || || ||||| || || |||||||| | |||| | || || Sbjct 3120 ACCAAATGCAGTGTGGACTCTTTCTGGATGTTGTAGTCTGATAGAGTGCGGCCATCCTCA 3179 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 || || ||||| || | || ||||| || || ||||| || | |||||| ||||| Sbjct 3180 AGTTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGGATACCCTCCTTATCTTGA 3239 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| ||||| | | || | || |||| | ||||| || | || || | || Sbjct 3240 ATCTTTGATTTCACGTTGTCGATGGTATCTGACGACTCAACCTCCAATGTGATTGTCTTT 3299 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || || ||||| |||||||||||| Sbjct 3300 CCGGTAAGTGTCTTCACGAAGATTTGCATA 3329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424915704214320