Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08-
07] 3,610 sequences; 36,184,363 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq60 140 3e-28
seq443 107 2e-18
>seq60
Length=14677
Score = 140 bits (154), Expect = 3e-28
Identities = 330/495 (67%), Gaps = 5/495 (1%)
Strand=Plus/Plus
Query 131603 GGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAAC 131662
|||||||| |||| |||||||| | ||| | |||||| |||||| |||||||| ||
Sbjct 9122 GGACATTCATTGGGGCACATTAGTGTCCAATCCGCGTTCTTTTCAACACGCTTCATGAAG 9181
Query 131663 AAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATA 131722
| |||||| | ||| || || || || ||||| | || ||||| | || ||
Sbjct 9182 AGATCCGGAATCCACAAGGCATAGAAAAGATCACGGGCGCGGACTTCTTCCTTGCC-ATG 9240
Query 131723 AtttttttCAAATTTAAA-AAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGC 131781
|| ||| || | | || || |||| || || ||||| || || | ||| |||||
Sbjct 9241 GTTCTTTCGAAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGACTGC 9300
Query 131782 CATTGCGCCTTTGCGCTTA---CCGCCTTGATTAACATGACGAACCATGTTGTTGTATAC 131838
| ||| || ||||| || ||||| | || | | | | |||||||| | ||
Sbjct 9301 AAATGCACCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTGTTGAAAAC 9360
Query 131839 GCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATGTAGCTGCCATT 131898
|| | |||||| | | ||||||| ||| || ||||| | ||||| ||| |
Sbjct 9361 TCGTAGCATGGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATGCACCAGT 9420
Query 131899 GGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCCGCCGTATTTAGAGATTAGTGCGCA 131958
||| | |||| |||||| |||||| ||||||||||| | | ||||||||| | || ||
Sbjct 9421 GGCACGGATTCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATCATAGCACA 9480
Query 131959 TTTGGTTAGAGTGTTATAGATACCTTCCACGCTGTCCGCGGCAATGTCGACTAAAAAGCA 132018
| | | || || | ||| ||||| || | |||||| | || || | | |||||
Sbjct 9481 TGTCTTGAGGGTATCATAAATACCATCAATACTGTCCTCCTTCATATCAATGAGGAAGCA 9540
Query 132019 AGAGGACAACTGTTGGTGAAATGTGCCGGCTGAAAACAATGTGGGGCTGGCGTGTGTAAA 132078
|| || | ||| || ||| || || || || | ||| ||| ||||||||| ||
Sbjct 9541 TGATGAAAGCTGAGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGTGTGAA 9600
Query 132079 AAGTTTTTTGGCCAT 132093
||| |||| |||
Sbjct 9601 GTATTTGTTGGACAT 9615
>seq443
Length=6205
Score = 107 bits (118), Expect = 2e-18
Identities = 142/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098
||||| || | || || |||||||| || ||||||||||||| | |||| | ||||||
Sbjct 3348 ACCAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAGGGTGCGACCATCTTCG 3407
Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158
|| |||||||| ||| | || | ||| ||||||||||| || | ||||| || || |
Sbjct 3408 AGTTGTTTACCAGCGAAGATCAAACGTTGTTGATCCGGAGGAATGCCCTCCTTGTCCTGG 3467
Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218
|||||| || | | | || | ||||| | | || || || ||||| || | |||
Sbjct 3468 ATCTTGGACTTGACGTTGTCGATGGTGTCGGACGACTCGACCTCAAGAGTGATGGTCTTG 3527
Query 27219 CCCGTCAGAGTTTTCAC 27235
|| || ||||| || ||
Sbjct 3528 CCAGTAAGAGTCTTGAC 3544
Score = 87.8 bits (96), Expect = 2e-12
Identities = 123/173 (71%), Gaps = 0/173 (0%)
Strand=Plus/Plus
Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110
||||| || |||||||| ||||||||||||| | | || | ||||| || ||||| ||
Sbjct 3644 GTAGACTCCTTTTGAATGTTGTAGTCGCTCAAGGTACGGCCATCTTCAAGTTGTTTGCCC 3703
Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170
||| | || | |||||||| ||||| || | ||||| ||||| |||||| | ||
Sbjct 3704 GCGAAGATCAAGCGCTGTTGGTCCGGGGGAATTCCCTCCTTATCCTGAATCTTGCTCTTT 3763
Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGT 27223
| | | || | ||| || ||| || || || || || || | ||||| ||
Sbjct 3764 ACGTTGTCGATAGTATCGCTGGACTCGACCTCGAGGGTGATGGTCTTGCCGGT 3816
Score = 82.4 bits (90), Expect = 6e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098
|||||||| | || || ||||| || || |||||||| | |||| | || ||
Sbjct 3120 ACCAAATGCAGTGTGGACTCTTTCTGGATGTTGTAGTCTGATAGAGTGCGGCCATCCTCA 3179
Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158
|| || ||||| || | || ||||| || || ||||| || | |||||| |||||
Sbjct 3180 AGTTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGGATACCCTCCTTATCTTGA 3239
Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218
||||| ||||| | | || | || |||| | ||||| || | || || | ||
Sbjct 3240 ATCTTTGATTTCACGTTGTCGATGGTATCTGACGACTCAACCTCCAATGTGATTGTCTTT 3299
Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
|| || || || ||||| ||||||||||||
Sbjct 3300 CCGGTAAGTGTCTTCACGAAGATTTGCATA 3329
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424915704214320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |