Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08-
07] 3,610 sequences; 36,184,363 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq60 215 6e-51
>seq60
Length=14677
Score = 215 bits (238), Expect = 6e-51
Identities = 1171/1846 (63%), Gaps = 51/1846 (3%)
Strand=Plus/Plus
Query 110331 TGAACTGAATTGGTCGGGCTTTCGCCTTTGATCGGAGATAGTACATCCCGGTCTTGAGTC 110390
|||||||||| ||| || | ||| | | ||||| |||||||| ||||||||||| |
Sbjct 7938 TGAACTGAATAGGTGCGGATGCGGCCATGGTACGGAGGTAGTACATTCCGGTCTTGAGAC 7997
Query 110391 CTTGTTTCCATGCGTACATATGCATAGAAGAGAGCTTGGACATCGTTGGACTTTCCATGA 110450
| |||||| || | |||||| |||| | |||| ||| || || || ||||
Sbjct 7998 CCAATTTCCAACCGGCGAAATGCATGGAAGTAATCTTGCCCATTGTGGGGTCTTTCATGT 8057
Query 110451 AGAGGTTCAT--ACTTTGACTTTGGTCAATGAAGCGCCCCCGTTGTGCCGCCATATCAAT 110508
| |||||| | | ||||| |||||| ||| || || | || ||||| | ||
Sbjct 8058 GAATGTTCATTGATTGTGACT--GGTCAACAAAGGCACCACGATCAGCGGCCATTTGAAC 8115
Query 110509 GACA--TCCTTCATCTTAATTTCCCAAACTGTGCGATAGAGATTCTTGATATCATCTGGG 110566
| || || | ||| ||||| || || || || |||||| ||| ||||
Sbjct 8116 AATTGTTCGTTGAGA--AATCTCCCAGACGGTCTTGTAAAGTGCCTTGATGTCAGCTGGA 8173
Query 110567 ATATCTGAGATATTCTGGATGGAACCCCCCGCCTTCACCATGAGATCCTTCATATCCTTG 110626
|| | | || || || || ||||| || | | ||| | | |||||| | |
Sbjct 8174 ATGTTGGGAATGTTTTGAATAGAACCACCGTCAGCGATGATGCGGTTCTTCATGTTGTCT 8233
Query 110627 GACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCTTGTTGACAATGACAAACTCA 110686
||||| | || || | || || |||| || ||| |||| || ||
Sbjct 8234 GACCATAATCCCATGTCGACAAGATCCTTGAGCAGCCATGGGTTAACAACTTGGAATTCT 8293
Query 110687 CCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTA 110746
|| || | | | | ||||||||| | ||||||||||||||||| || || |
Sbjct 8294 CCAGCCAAGACACGACGAGAGTAGATGTTAGAAGTGTATGGTTCAAAGCACTCGTTGAAA 8353
Query 110747 CCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGA 110806
|| | ||||| | |||| |||||||||||| || || | | | |||||| || | |
Sbjct 8354 CCGAGAATTTGAGAGGTGCTGGCTGTTGGCATAGGAGCAACGAGCAAACTGTTGCGGACA 8413
Query 110807 CCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTAGTTGA-GCTTGGTTTCACC 110865
|| | | |||||| || ||| | ||||||||| | | | | ||| | ||
Sbjct 8414 CCGTGTTGTTTGATGGATTTCTTCAAGCTATCCCAGTCCCAAAGGTCGGTAGGTGTAAC- 8472
Query 110866 TTCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATA 110925
| ||||||| || | ||||| | || | || | || || || || | || |||||
Sbjct 8473 TCCCCACATATCGTATTGAAGTTCGCCCTTCGAGACAGGTGAGCCTTCGTAAGTCTCATA 8532
Query 110926 GGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTC 110985
|| ||| | | ||| | ||| | || || | ||||| || || |||||
Sbjct 8533 GGTACCCAACTCCTTAGCAATCTCAACGGACGATGTCAAAGCAGCGTGGTAAATAGTTTC 8592
Query 110986 AAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAA--A 111043
||||| || || | | |||||||||| ||| ||||||| ||| | | | |
Sbjct 8593 GAAGATTTGAATGTTGAGGTGCTTGGCTTCAGGTGATTCAAATG-GTAATCGAAGAGCCA 8651
Query 111044 ATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGAC 111103
| ||| |||| || |||||||||||||| | | | ||||||| || || | ||| |
Sbjct 8652 AGAAAG-CATCGGCAAGACCTTGAACACCGACAGCGATAGGTCGATGACGGAAATTGCTC 8710
Query 111104 TTTCGCGCAGTCTCA-ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGT 111162
|||| || ||| ||||| || | || ||||||||| ||| | ||| ||
Sbjct 8711 TTTCTGGCC-TCTGGGACGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAGTTTCTGAC 8769
Query 111163 AACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTC-TTCATTG- 111220
||| | | || | || ||||| |||| |||| |||| | ||| |||||
Sbjct 8770 AACGACTTGAGTAACCTCGTGAAGCTTTTGGAAATCGTAAGTTCC---CTCATTCATGTC 8826
Query 111221 -ACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGT 111279
||| | |||| || || || || ||||| || || ||| ||||| | |
Sbjct 8827 CACAAATGTTGGGAGAGCAATGGAAGCCAAGTTACAGCAAGCGACTTCATCTGGGGCAGA 8886
Query 111280 GTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTT 111339
||| || | ||||||||| || || ||||| || ||| || || | |||||||||||
Sbjct 8887 GTATTCGACAATTTCTGTGCACAAATTGGAGCTGCGAATGGTGCCGAGGTTCTTTTGGTT 8946
Query 111340 ACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGA 111399
|||||||||||||| ||||||||||| |||||| | || | || ||||| || || |
Sbjct 8947 GCTCTTCTTGTTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGTCTCGGTTTGAGC 9006
Query 111400 TTTGAGAATAGCCTTCCAAACATCGGCGGCTGGTACAATGGCGTTG---GCCCGTCCCTC 111456
| |||||| | | ||||| | ||| | |||| ||| | | || ||
Sbjct 9007 CTCGAGAATGGAGTACCAAAGCTTTTGGGC---TTTGATGGTCTTGCGACCTCTACCTTC 9063
Query 111457 CGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGG 111516
| ||| || | ||||| ||||||||||| || || | || | | || ||
Sbjct 9064 CTTCTCATAACTCTCATAGAGAGCTTCAAACTCGTCGCCATATACATCAGCCAACCCAGG 9123
Query 111517 ---TGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTC--CTCAACCCGCTTCATG 111571
| | ||| || || | || | ||| | || | ||| ||||| |||||||||
Sbjct 9124 ACATTCATTG---GGGCACATTAGTGTCCAAT--CCGCGTTCTTTTCAACACGCTTCATG 9178
Query 111572 AAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCT 111631
|| || || |||||||||| || | || ||||| | || | ||||| | ||
Sbjct 9179 AAGAGATCCGGAATCCACAAGGCATAGAAAAGATCACGGGCGCGGACTTCTTCCTTGCCA 9238
Query 111632 TGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACT 111691
||||| ||| | || |||||||| | | ||| |||||||| |||||||||||||||
Sbjct 9239 TGGTTCTTTCGAAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGACT 9298
Query 111692 GCGATAGATCCCTTTCGACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTA 111745
|| | || | ||||| ||| |||| | || || | || ||| |||
Sbjct 9299 GC---AAATGCACCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTGTTG 9355
Query 111746 AATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGAT 111805
|| || || ||||| || | || || | || | ||| || || || || |
Sbjct 9356 AAAACTCGTAGCATGGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATGCA 9415
Query 111806 TTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGC 111865
| |||| | | || |||| | |||||||| ||||| || |||||
Sbjct 9416 CCAGTGGCACGGATTCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATCATA 9475
Query 111866 GCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGG 111925
||||| | | || || |||| ||||| | || ||||||||| | | || |||
Sbjct 9476 GCACATGTCTTGAGGGTATCATAAATACCATCAATACTGTCCTCCTTCATATCAATGAGG 9535
Query 111926 AAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGA 111985
||||| || | ||| | | |||||||||||| ||| || || || | |||||
Sbjct 9536 AAGCATGATGAAAGCTGAGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGT 9595
Query 111986 ATGAACATACCT-TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCC 112044
|||| || | | |||||| || ||| ||||| | | | || || || || ||
Sbjct 9596 GTGAA-GTATTTGTTGGACATAAGGTTGTAGGTCTCAATGGCGCTCTCGATATCGTCACC 9654
Query 112045 GTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATC 112104
||| || || | || || ||||||| ||| | ||||| ||| | | |||||
Sbjct 9655 GTGAATACCAACGGCAACACGCATGATCATTTGTTGTGGACGTTCTGCAACTTTTCCATC 9714
Query 112105 GAGCCGTTGAAGATA-GCTCTTCTCAAGGGTTTTGAGACCAAAGTA 112149
||| || |||| || | || ||| ||||| |||| || |||||
Sbjct 9715 GAGTCGAAGAAGGTACGATC-GCTCGAGGGTCTTGAATCCGAAGTA 9759
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 628003660056000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |