Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08- 07] 3,610 sequences; 36,184,363 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq60 215 6e-51 >seq60 Length=14677 Score = 215 bits (238), Expect = 6e-51 Identities = 1171/1846 (63%), Gaps = 51/1846 (3%) Strand=Plus/Plus Query 110331 TGAACTGAATTGGTCGGGCTTTCGCCTTTGATCGGAGATAGTACATCCCGGTCTTGAGTC 110390 |||||||||| ||| || | ||| | | ||||| |||||||| ||||||||||| | Sbjct 7938 TGAACTGAATAGGTGCGGATGCGGCCATGGTACGGAGGTAGTACATTCCGGTCTTGAGAC 7997 Query 110391 CTTGTTTCCATGCGTACATATGCATAGAAGAGAGCTTGGACATCGTTGGACTTTCCATGA 110450 | |||||| || | |||||| |||| | |||| ||| || || || |||| Sbjct 7998 CCAATTTCCAACCGGCGAAATGCATGGAAGTAATCTTGCCCATTGTGGGGTCTTTCATGT 8057 Query 110451 AGAGGTTCAT--ACTTTGACTTTGGTCAATGAAGCGCCCCCGTTGTGCCGCCATATCAAT 110508 | |||||| | | ||||| |||||| ||| || || | || ||||| | || Sbjct 8058 GAATGTTCATTGATTGTGACT--GGTCAACAAAGGCACCACGATCAGCGGCCATTTGAAC 8115 Query 110509 GACA--TCCTTCATCTTAATTTCCCAAACTGTGCGATAGAGATTCTTGATATCATCTGGG 110566 | || || | ||| ||||| || || || || |||||| ||| |||| Sbjct 8116 AATTGTTCGTTGAGA--AATCTCCCAGACGGTCTTGTAAAGTGCCTTGATGTCAGCTGGA 8173 Query 110567 ATATCTGAGATATTCTGGATGGAACCCCCCGCCTTCACCATGAGATCCTTCATATCCTTG 110626 || | | || || || || ||||| || | | ||| | | |||||| | | Sbjct 8174 ATGTTGGGAATGTTTTGAATAGAACCACCGTCAGCGATGATGCGGTTCTTCATGTTGTCT 8233 Query 110627 GACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCTTGTTGACAATGACAAACTCA 110686 ||||| | || || | || || |||| || ||| |||| || || Sbjct 8234 GACCATAATCCCATGTCGACAAGATCCTTGAGCAGCCATGGGTTAACAACTTGGAATTCT 8293 Query 110687 CCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTA 110746 || || | | | | ||||||||| | ||||||||||||||||| || || | Sbjct 8294 CCAGCCAAGACACGACGAGAGTAGATGTTAGAAGTGTATGGTTCAAAGCACTCGTTGAAA 8353 Query 110747 CCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGA 110806 || | ||||| | |||| |||||||||||| || || | | | |||||| || | | Sbjct 8354 CCGAGAATTTGAGAGGTGCTGGCTGTTGGCATAGGAGCAACGAGCAAACTGTTGCGGACA 8413 Query 110807 CCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTAGTTGA-GCTTGGTTTCACC 110865 || | | |||||| || ||| | ||||||||| | | | | ||| | || Sbjct 8414 CCGTGTTGTTTGATGGATTTCTTCAAGCTATCCCAGTCCCAAAGGTCGGTAGGTGTAAC- 8472 Query 110866 TTCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATA 110925 | ||||||| || | ||||| | || | || | || || || || | || ||||| Sbjct 8473 TCCCCACATATCGTATTGAAGTTCGCCCTTCGAGACAGGTGAGCCTTCGTAAGTCTCATA 8532 Query 110926 GGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTC 110985 || ||| | | ||| | ||| | || || | ||||| || || ||||| Sbjct 8533 GGTACCCAACTCCTTAGCAATCTCAACGGACGATGTCAAAGCAGCGTGGTAAATAGTTTC 8592 Query 110986 AAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAA--A 111043 ||||| || || | | |||||||||| ||| ||||||| ||| | | | | Sbjct 8593 GAAGATTTGAATGTTGAGGTGCTTGGCTTCAGGTGATTCAAATG-GTAATCGAAGAGCCA 8651 Query 111044 ATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGAC 111103 | ||| |||| || |||||||||||||| | | | ||||||| || || | ||| | Sbjct 8652 AGAAAG-CATCGGCAAGACCTTGAACACCGACAGCGATAGGTCGATGACGGAAATTGCTC 8710 Query 111104 TTTCGCGCAGTCTCA-ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGT 111162 |||| || ||| ||||| || | || ||||||||| ||| | ||| || Sbjct 8711 TTTCTGGCC-TCTGGGACGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAGTTTCTGAC 8769 Query 111163 AACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTC-TTCATTG- 111220 ||| | | || | || ||||| |||| |||| |||| | ||| ||||| Sbjct 8770 AACGACTTGAGTAACCTCGTGAAGCTTTTGGAAATCGTAAGTTCC---CTCATTCATGTC 8826 Query 111221 -ACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGT 111279 ||| | |||| || || || || ||||| || || ||| ||||| | | Sbjct 8827 CACAAATGTTGGGAGAGCAATGGAAGCCAAGTTACAGCAAGCGACTTCATCTGGGGCAGA 8886 Query 111280 GTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTT 111339 ||| || | ||||||||| || || ||||| || ||| || || | ||||||||||| Sbjct 8887 GTATTCGACAATTTCTGTGCACAAATTGGAGCTGCGAATGGTGCCGAGGTTCTTTTGGTT 8946 Query 111340 ACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGA 111399 |||||||||||||| ||||||||||| |||||| | || | || ||||| || || | Sbjct 8947 GCTCTTCTTGTTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGTCTCGGTTTGAGC 9006 Query 111400 TTTGAGAATAGCCTTCCAAACATCGGCGGCTGGTACAATGGCGTTG---GCCCGTCCCTC 111456 | |||||| | | ||||| | ||| | |||| ||| | | || || Sbjct 9007 CTCGAGAATGGAGTACCAAAGCTTTTGGGC---TTTGATGGTCTTGCGACCTCTACCTTC 9063 Query 111457 CGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGG 111516 | ||| || | ||||| ||||||||||| || || | || | | || || Sbjct 9064 CTTCTCATAACTCTCATAGAGAGCTTCAAACTCGTCGCCATATACATCAGCCAACCCAGG 9123 Query 111517 ---TGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTC--CTCAACCCGCTTCATG 111571 | | ||| || || | || | ||| | || | ||| ||||| ||||||||| Sbjct 9124 ACATTCATTG---GGGCACATTAGTGTCCAAT--CCGCGTTCTTTTCAACACGCTTCATG 9178 Query 111572 AAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCT 111631 || || || |||||||||| || | || ||||| | || | ||||| | || Sbjct 9179 AAGAGATCCGGAATCCACAAGGCATAGAAAAGATCACGGGCGCGGACTTCTTCCTTGCCA 9238 Query 111632 TGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACT 111691 ||||| ||| | || |||||||| | | ||| |||||||| ||||||||||||||| Sbjct 9239 TGGTTCTTTCGAAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGACT 9298 Query 111692 GCGATAGATCCCTTTCGACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTA 111745 || | || | ||||| ||| |||| | || || | || ||| ||| Sbjct 9299 GC---AAATGCACCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTGTTG 9355 Query 111746 AATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGAT 111805 || || || ||||| || | || || | || | ||| || || || || | Sbjct 9356 AAAACTCGTAGCATGGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATGCA 9415 Query 111806 TTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGC 111865 | |||| | | || |||| | |||||||| ||||| || ||||| Sbjct 9416 CCAGTGGCACGGATTCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATCATA 9475 Query 111866 GCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGG 111925 ||||| | | || || |||| ||||| | || ||||||||| | | || ||| Sbjct 9476 GCACATGTCTTGAGGGTATCATAAATACCATCAATACTGTCCTCCTTCATATCAATGAGG 9535 Query 111926 AAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGA 111985 ||||| || | ||| | | |||||||||||| ||| || || || | ||||| Sbjct 9536 AAGCATGATGAAAGCTGAGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGT 9595 Query 111986 ATGAACATACCT-TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCC 112044 |||| || | | |||||| || ||| ||||| | | | || || || || || Sbjct 9596 GTGAA-GTATTTGTTGGACATAAGGTTGTAGGTCTCAATGGCGCTCTCGATATCGTCACC 9654 Query 112045 GTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATC 112104 ||| || || | || || ||||||| ||| | ||||| ||| | | ||||| Sbjct 9655 GTGAATACCAACGGCAACACGCATGATCATTTGTTGTGGACGTTCTGCAACTTTTCCATC 9714 Query 112105 GAGCCGTTGAAGATA-GCTCTTCTCAAGGGTTTTGAGACCAAAGTA 112149 ||| || |||| || | || ||| ||||| |||| || ||||| Sbjct 9715 GAGTCGAAGAAGGTACGATC-GCTCGAGGGTCTTGAATCCGAAGTA 9759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628003660056000