Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08-
07] 3,610 sequences; 36,184,363 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq60 158 1e-33
seq3070 109 7e-19
>seq60
Length=14677
Score = 158 bits (174), Expect = 1e-33
Identities = 1124/1782 (63%), Gaps = 55/1782 (3%)
Strand=Plus/Plus
Query 117805 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 117864
|||||||||| ||| | |||| | | |||||||||||||| || |||||||| |
Sbjct 7938 TGAACTGAATAGGTGCGGATGCGGCCATGGTACGGAGGTAGTACATTCCGGTCTTGAGAC 7997
Query 117865 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGGGTTGGACTTTCCATGA 117924
|| ||||| | | |||||| || | | |||| | || || || ||||
Sbjct 7998 CCAATTTCCAACCGGCGAAATGCATGGAAGTAATCTTGCCCATTGTGGGGTCTTTCATGT 8057
Query 117925 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCA 117984
| |||||| ||| || || || | ||| || ||||| || ||||| | || ||
Sbjct 8058 GAATGTTCATTGATTGTGACTGGTCAACAAAGGCACCACGATCAGCGGCCATTTGAA-CA 8116
Query 117985 CATCCTTCATCTTGA--TTTCCCACACAGTCCTGTAGAGGTTCTTAATATCATCTGGGAT 118042
|| ||| | || | ||||| || ||| |||| || ||| || ||| |||| ||
Sbjct 8117 -ATTGTTCGTTGAGAAATCTCCCAGACGGTCTTGTAAAGTGCCTTGATGTCAGCTGGAAT 8175
Query 118043 ATCCACGATATTTTGGATGGATCCACCCGCCTTGACCATGAGATCCTTCATATCCTTTGA 118102
| || ||||| || || ||||| | || ||| | | |||||| | | |||
Sbjct 8176 GTTGGGAATGTTTTGAATAGAACCACCGTCAGCGATGATGCGGTTCTTCATGTTGTCTGA 8235
Query 118103 CCAGAGACCAATCTTTTTGAGATCCTCCACGAG--ATGCTTATTGACAACAACAAACTCA 118160
||| | || || | ||||||| | || ||| | | ||||| || ||
Sbjct 8236 CCATAATCCCATGTCGACAAGATCCTTGAGCAGCCATGGGT--TAACAACTTGGAATTCT 8293
Query 118161 CCCGCGAGGGTGCGTCTCAGA-TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTT 118219
|| || | | || | ||| ||||| || | |||||||| ||||||||||| |||
Sbjct 8294 CCAGCCAAGACACGACG-AGAGTAGATGTTAGAAGTGTATGGTTCAAAGCACTCGTTGAA 8352
Query 118220 ACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAG 118279
||| | ||||| | ||| |||||| ||||| || || | ||| | ||||| ||||
Sbjct 8353 ACCGAGAATTTGAGAGGTGCTGGCTGTTGGCATAGGAGCAACGAGCAAACTGTTGCGGAC 8412
Query 118280 ACCCTTTTCCCTAATGCGTTCCTTGAGAGCG-TCCCAGTCGTA---GTTG--AGCTTTGT 118333
||| | || | ||| || ||| | ||| |||||||| | || | || | |
Sbjct 8413 ACCGTGTTGTTTGATGGATTTCTTCA-AGCTATCCCAGTCCCAAAGGTCGGTAGGTGTAA 8471
Query 118334 CTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGT 118393
|||||| ||||||| | || || || | || | || || || || | ||
Sbjct 8472 CTCCCC-----ACATATCGTATTGAAGTTCGCCCTTCGAGACAGGTGAGCCTTCGTAAGT 8526
Query 118394 CTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACAT 118453
|||||| | ||| ||| || | || | || | || ||||| || ||
Sbjct 8527 CTCATAGGTACCCAACTCCTTAGCAATCTCAACGGACGATGTCAAAGCAGCGTGGTAAAT 8586
Query 118454 TGTTTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGC- 118512
||||| || || || || | |||||| || || ||||| | | |||
Sbjct 8587 AGTTTCGAAGATTTGAATGTTGAGGTGCTTGGCTTCAGGTGATTCAAATGGTAATCGAAG 8646
Query 118513 ACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATAT 118572
| || ||| |||| || |||||||| ||||||| | || || ||||| | | ||
Sbjct 8647 AGCCAAGAAAG-CATCGGCAAGACCTTGAACACCGACAGCGATAGGTCGATGACGGAAAT 8705
Query 118573 TAGACTTCCGAGCGGTCTCC-ACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTT 118631
| ||| | || ||| ||||| || | || | || || | | | || | |||
Sbjct 8706 TGCTCTTTCTGGCC-TCTGGGACGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAGTTT 8764
Query 118632 TTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTC-TTC 118690
|| || || | || | || |||||||||| | |||| || | | ||| |||
Sbjct 8765 CTGACAACGACTTGAGTAACCTCGTGAAGCTTTTGGAAATCGTAAGTTCC---CTCATTC 8821
Query 118691 ATTG--ACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTA 118748
|| ||| | | || || || || || |||| ||||| || | |||||
Sbjct 8822 ATGTCCACAAATGTTGGGAGAGCAATGGAAGCCAAGTTACAGCAAGCGACTTCATCTGGG 8881
Query 118749 TCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTT 118808
||| ||| || | |||||| |||||||| || || || ||||||||| | |||||||
Sbjct 8882 GCAGAGTATTCGACAATTTCTGTGCACAAATTGGAGCTGCGAATGGTGCCGAGGTTCTTT 8941
Query 118809 TGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTT 118868
|| || ||| |||| || |||||||||||||||||| |||| | || ||||| |||
Sbjct 8942 TGGTTGCTCTTCTTGTTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGTCTCGGTT 9001
Query 118869 TGGGACTTGAGAATAGCCTTCCAGACATCGGCAGCTGGCACAGTGGCGTTG---GCTCGC 118925
|| | || |||||| | | ||| | | ||| | ||| ||| |||
Sbjct 9002 TGAGCCTCGAGAATGGAGTACCAAAGCTTTTGGGCTTTGA---TGGTCTTGCGACCTCTA 9058
Query 118926 CCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGC 118985
|| || | ||| || | ||||| ||||||||||| || || | || | | |
Sbjct 9059 CCTTCCTTCTCATAACTCTCATAGAGAGCTTCAAACTCGTCGCCATATACATCAGCCAAC 9118
Query 118986 CCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATG 119045
|| || | || ||||| | || | ||| | | || ||||| |||||||||
Sbjct 9119 CCAGGACATTCATTGGGGCACATTAGTGTCCAATCCGCGTTCTTTTCAACACGCTTCATG 9178
Query 119046 AAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCC 119105
||||| || || ||||| | || |||| ||||| || ||| ||||||| | ||
Sbjct 9179 AAGAGATCCGGAATCCACAAGGCATAGAAAAGATCACGGGCGCGGACTTCTTCCTTGCCA 9238
Query 119106 TGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACC 119165
|| || || | |||| || || | | ||| |||||||| || || || || ||
Sbjct 9239 TGGTTCTTTCGAAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGACT 9298
Query 119166 GCGATTGACCCCTTACGACG------ACCAGCCTGGTTTACATACCTCGCAGTGGCGTTA 119219
|| | || || | |||| ||| | |||| || || || |||||| |||
Sbjct 9299 GCAAATGCACC---AGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTGTTG 9355
Query 119220 AATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGT-CCCCCGA-ATACGAG 119277
|| || || ||||| || | ||| || | ||| | || || || || ||| || |
Sbjct 9356 AAAACTCGTAGCATGGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATG-C 9414
Query 119278 ACTTATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTT 119337
|| | |||| | || ||| |||| | ||||||||| || || || |||||
Sbjct 9415 AC-CAGTGGCACGGATTCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATCA 9473
Query 119338 GCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGA 119397
|| || | |||| | | || || ||||| || ||| |||| | | ||||
Sbjct 9474 TAGCACATGTCTTGAGGGTATCATAAATACCATCAATACTGTCCTCCTTCATATCAATGA 9533
Query 119398 GGAAGCAGCTCGACATTTGAGGCCTG-GGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCG 119456
||||||| || | ||| || || |||||||||||| ||| || || || | |||
Sbjct 9534 GGAAGCATGATGAAAGCTGA-GCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCG 9592
Query 119457 TGGATGAACATACCT-TGGGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTC 119515
|| |||| || | | |||||| || ||||||||| | | || || || ||
Sbjct 9593 TGTGTGAA-GTATTTGTTGGACATAAGGTTGTAGGTCTCAATGGCGCTCTCGATATCGTC 9651
Query 119516 CCCGTGAATACCGATCGAGACCCGCATAAACATGTATTGGGG 119557
||||||||||| | | || ||||| | ||| | ||| ||
Sbjct 9652 ACCGTGAATACCAACGGCAACACGCATGATCATTTGTTGTGG 9693
>seq3070
Length=35956
Score = 109 bits (120), Expect = 7e-19
Identities = 113/148 (76%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 130028 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCC 130087
|||||||| || |||||||||||||| ||||| ||||| ||||| | ||| | ||
Sbjct 28826 TGGAGACCTTCATCACGGGAGATGAGCTCATTGGAGAAAGTGAGACCAGCCATCAAGCCA 28885
Query 130088 CGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACAC 130147
|||||||| | |||||| || | | ||||| ||| ||||||||| ||||| |||
Sbjct 28886 CGCTTCTTGAGCCAGAAGATAGAAGCGAATGATCCACTGAAGAAGATGCCCTCAACAGCA 28945
Query 130148 GCGAACGCAAAGAGACGCTCAGCAAAGG 130175
|| || |||| ||||||| ||||||||
Sbjct 28946 GCAAAAGCAACCAGACGCTGAGCAAAGG 28973
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618407293111600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |