Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08-
07] 3,610 sequences; 36,184,363 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq60 246 3e-60
seq3070 111 2e-19
>seq60
Length=14677
Score = 246 bits (272), Expect = 3e-60
Identities = 693/1047 (66%), Gaps = 38/1047 (4%)
Strand=Plus/Plus
Query 78864 CATGAAGACATCGGCCAGGCCCTGGACGCCGATAGCGATCGGTCGGTGGCGCATGTTGCT 78923
|| ||| ||||||| || || || || |||| |||||| ||||| || || | |||||
Sbjct 8650 CAAGAAAGCATCGGCAAGACCTTGAACACCGACAGCGATAGGTCGATGACGGAAATTGCT 8709
Query 78924 CTTTCGGGCCGCCTCGGTCGGG-TAAAAGTTCCGATCGATGACGCGGTTCAGGTTACGCG 78982
||||| |||| | | || |||| || |||| || |||| ||||| ||| |
Sbjct 8710 CTTTCTGGCCTC-TGGGACGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAGTTTCTGA 8768
Query 78983 TGACGACCCGAGTCACCTCGTACAATTTGGCGAAATCAAAATGATTTCCT--TTGATG-- 79038
||||| |||| ||||||| | || |||||| || || ||| || |||
Sbjct 8769 CAACGACTTGAGTAACCTCGTGAAGCTTTTGGAAATCGTAAG--TTCCCTCATTCATGTC 8826
Query 79039 ----AAAGTCGGTAG-GCACAGCGATGCCAGGTTGCA-CACGGCCGTCT-CGTCCGGGCT 79091
|| || || || ||| | || |||| ||| || || | || || | || |||
Sbjct 8827 CACAAATGTTGGGAGAGCAATG-GAAGCCAAGTTACAGCAAG--CGACTTCATCTGGGGC 8883
Query 79092 AGAAACCTCGATGATTTCTGTGCACAAATTAGA----CGACTTGATGGTGCCGATGTTCT 79147
||| |||| ||||||||||||||||| || ||| |||||||||| |||||
Sbjct 8884 AGAGTATTCGACAATTTCTGTGCACAAATTGGAGCTGCGA----ATGGTGCCGAGGTTCT 8939
Query 79148 TCTGGTTGCTCTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAA 79207
| ||||||||||||| ||| || || |||||||| |||| | || | ||||||||
Sbjct 8940 TTTGGTTGCTCTTCTTGTTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGTCTCGG 8999
Query 79208 CCTGACTCTTGAGAACGCCGTCCCAGATGTCCCGGGCCCGGACAACCTT----CTTGTAC 79263
||| || ||||| | || ||| | | |||| || ||| | | |||
Sbjct 9000 TTTGAGCCTCGAGAATGGAGTACCAAAGCTTTTGGGCTTTGATGGTCTTGCGACCTCTAC 9059
Query 79264 CGACCCTGTGCGACGTACGTCCGGTACAACTCGTTGAAAGCCTCCCCATAGACATCGGGC 79323
| || | | | || || || | | | || | || ||||| ||||| | |
Sbjct 9060 CTTCCTTCT----CATAACTCTCATAGAGAGCTTCAAACTCGTCGCCATATACATCAGCC 9115
Query 79324 AGGCCCGGGCACTCGTGCGGGCACATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCC 79383
| || || || || | |||||||| || ||| ||| ||| ||| ||||| || |
Sbjct 9116 AACCCAGGACATTCATTGGGGCACATTAGTGTCCAATCCGCGTTCTTTTCAACACGCTTC 9175
Query 79384 ATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCG 79443
|||||||| ||||| ||||||| ||| ||| || || ||| || | || || | |
Sbjct 9176 ATGAAGAGATCCGGAATCCACAAGGCATAGAAAAGATCACGGGCGCGGACTTCTTCCTTG 9235
Query 79444 CCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAG 79503
|| |||||| || || || || || || | | || |||||||| ||||| ||||||
Sbjct 9236 CCATGGTTCTTTCGAAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAG 9295
Query 79504 ATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTG 79563
| || || | ||| |||||| || || |||| |||||| | || |||||||||
Sbjct 9296 ACTGCAAATGCACCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTGTTG 9355
Query 79564 AAAACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTA 79623
|||||||| |||||||| |||||||||| || | ||||| || ||| ||| || |
Sbjct 9356 AAAACTCGTAGCATGGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATGCA 9415
Query 79624 CCGCTCGCCCGAATGTTCGAGCA-GTGGATTCCGATGCCCCCGGACCACTTGGAGATGTG 79682
|| | || || || | | | | || || || || || || | || |||||
Sbjct 9416 CCAGTGGCACGGAT-TCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATCAT 9474
Query 79683 CGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAG 79742
|| || |||||| || || || || || || || ||| ||||||||| | | ||
Sbjct 9475 AGCACATGTCTTGAGGGTATCATAAATACCATCAATACTGTCCTCCTTCATATCAATGAG 9534
Query 79743 GAAGCAGCTCGACATCTGTGGGTTGT-TCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGT 79801
|||||| || | ||| | |||| ||||| ||| ||| || || || | ||||
Sbjct 9535 GAAGCATGATGAAAGCTG-AGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGT 9593
Query 79802 GCGTGAAGAACTTTTGGCTCATCAGATCGTACGTCTCCTTGACGCGCGGGAGGTCGTCGC 79861
| |||||| | || | | ||| || | ||| ||||| || ||| | || ||||| |
Sbjct 9594 GTGTGAAGTATTTGTTGGACATAAGGTTGTAGGTCTCAATGGCGCTCTCGATATCGTCAC 9653
Query 79862 CGTGGATGCCGACCGCGACGCGCATGA 79888
|||| || || || || || |||||||
Sbjct 9654 CGTGAATACCAACGGCAACACGCATGA 9680
Score = 181 bits (200), Expect = 1e-40
Identities = 398/591 (67%), Gaps = 4/591 (1%)
Strand=Plus/Minus
Query 19116 TCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTCCGCGAGACATACG 19175
||||||| || || || || || || || ||||| || | | | | ||||| |||
Sbjct 9680 TCATGCGTGTTGCCGTTGGTATTCACGGTGACGATATCGAGAGCGCCATTGAGACCTACA 9621
Query 19176 ACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAACGCCGGTACGA 19235
|||| ||| | | || | |||||| ||||| | || || |||||| ||| |||||
Sbjct 9620 ACCTTATGTCCAACAAATACTTCACACACGCCTCCCCTACACTTTTCTCCGCTGGTACAC 9561
Query 19236 -ACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGC 19294
|||| | ||| | || || ||||| | | ||||||||| ||||| ||||| ||
Sbjct 9560 CACAAGCT-CAGCTTTCATCATGCTTCCTCATTGATATGAAGGAGGACAGTATTGATGGT 9502
Query 19295 ATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGGATC 19354
|| || || || |||||| || || ||||| || | || ||||| || ||
Sbjct 9501 ATTTATGATACCCTCAAGACATGTGCTATGATCTCTAAAAATGCTGGAGGTATTGGTCTC 9442
Query 19355 CAC-TGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAACGGAGTAGCCGA 19413
|| | | | | ||||| | | |||| || ||| || || ||||| || |
Sbjct 9441 AACATTCACAGA-ATCCGTGCCACTGGTGCATACATCGCCGGTACCAACGGTAACTCCAA 9383
Query 19414 CGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGGGG 19473
||| ||||| || ||||| || || ||||||||||| || || |||||| |||| || ||
Sbjct 9382 CGGCATCGTACCCATGCTACGAGTTTTCAACAACACTGCTAGATACGTCGACCAAGGTGG 9323
Query 19474 CGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATGGA 19533
||| || || | || || |||| || ||||| |||||||| || || | ||
Sbjct 9322 AAACAAGCGTCCTGGTGCATTTGCAGTCTATCTTGAGCCTTGGCACGCAGATGTTTTCGA 9263
Query 19534 TTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTCAC 19593
||||| || || || |||||| || | || || | ||| || || || |||
Sbjct 9262 GTTCCTGGACCTTCGAAAGAACCATGGCAAGGAAGAAGTCCGCGCCCGTGATCTTTTCTA 9203
Query 19594 GGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGAATGGCACCT 19653
||||||||||||||||| || |||||| || ||||| ||| ||| || ||| ||
Sbjct 9202 TGCCTTGTGGATTCCGGATCTCTTCATGAAGCGTGTTGAAAAGAACGCGGATTGGACACT 9143
Query 19654 GATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGGCGTT 19704
|||||||| | ||||| ||||| | | || || || ||||| | |||
Sbjct 9142 AATGTGCCCCAATGAATGTCCTGGGTTGGCTGATGTATATGGCGACGAGTT 9092
>seq3070
Length=35956
Score = 111 bits (122), Expect = 2e-19
Identities = 115/148 (78%), Gaps = 2/148 (1%)
Strand=Plus/Minus
Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTT 60031
||||| || ||||| | |||||||| ||| || || || ||||||||| ||| || ||
Sbjct 28971 TTTGCTCAGCGTCTGGTTGCTTTTGC-TGCTGTTGAGGGCATCTTCTTCAGTGGATCATT 28913
Query 60032 CTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGA 60091
| | |||| ||||||||||| ||||||||| | ||| | || || | ||||||||| ||
Sbjct 28912 CGCTTCTATCTTCTGGCTCAAGAAGCGTGGCTTGATGGCTGGTCTCACTTTCTCCAATGA 28853
Query 60092 GCTGATTTCCCGGGACGAGGGCCTCCAT 60119
||| || ||||| || || || ||||||
Sbjct 28852 GCTCATCTCCCGTGATGAAGGTCTCCAT 28825
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548500047818400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |