Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08- 07] 3,610 sequences; 36,184,363 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq60 246 3e-60 seq3070 111 2e-19 >seq60 Length=14677 Score = 246 bits (272), Expect = 3e-60 Identities = 693/1047 (66%), Gaps = 38/1047 (4%) Strand=Plus/Plus Query 78864 CATGAAGACATCGGCCAGGCCCTGGACGCCGATAGCGATCGGTCGGTGGCGCATGTTGCT 78923 || ||| ||||||| || || || || |||| |||||| ||||| || || | ||||| Sbjct 8650 CAAGAAAGCATCGGCAAGACCTTGAACACCGACAGCGATAGGTCGATGACGGAAATTGCT 8709 Query 78924 CTTTCGGGCCGCCTCGGTCGGG-TAAAAGTTCCGATCGATGACGCGGTTCAGGTTACGCG 78982 ||||| |||| | | || |||| || |||| || |||| ||||| ||| | Sbjct 8710 CTTTCTGGCCTC-TGGGACGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAGTTTCTGA 8768 Query 78983 TGACGACCCGAGTCACCTCGTACAATTTGGCGAAATCAAAATGATTTCCT--TTGATG-- 79038 ||||| |||| ||||||| | || |||||| || || ||| || ||| Sbjct 8769 CAACGACTTGAGTAACCTCGTGAAGCTTTTGGAAATCGTAAG--TTCCCTCATTCATGTC 8826 Query 79039 ----AAAGTCGGTAG-GCACAGCGATGCCAGGTTGCA-CACGGCCGTCT-CGTCCGGGCT 79091 || || || || ||| | || |||| ||| || || | || || | || ||| Sbjct 8827 CACAAATGTTGGGAGAGCAATG-GAAGCCAAGTTACAGCAAG--CGACTTCATCTGGGGC 8883 Query 79092 AGAAACCTCGATGATTTCTGTGCACAAATTAGA----CGACTTGATGGTGCCGATGTTCT 79147 ||| |||| ||||||||||||||||| || ||| |||||||||| ||||| Sbjct 8884 AGAGTATTCGACAATTTCTGTGCACAAATTGGAGCTGCGA----ATGGTGCCGAGGTTCT 8939 Query 79148 TCTGGTTGCTCTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAA 79207 | ||||||||||||| ||| || || |||||||| |||| | || | |||||||| Sbjct 8940 TTTGGTTGCTCTTCTTGTTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGTCTCGG 8999 Query 79208 CCTGACTCTTGAGAACGCCGTCCCAGATGTCCCGGGCCCGGACAACCTT----CTTGTAC 79263 ||| || ||||| | || ||| | | |||| || ||| | | ||| Sbjct 9000 TTTGAGCCTCGAGAATGGAGTACCAAAGCTTTTGGGCTTTGATGGTCTTGCGACCTCTAC 9059 Query 79264 CGACCCTGTGCGACGTACGTCCGGTACAACTCGTTGAAAGCCTCCCCATAGACATCGGGC 79323 | || | | | || || || | | | || | || ||||| ||||| | | Sbjct 9060 CTTCCTTCT----CATAACTCTCATAGAGAGCTTCAAACTCGTCGCCATATACATCAGCC 9115 Query 79324 AGGCCCGGGCACTCGTGCGGGCACATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCC 79383 | || || || || | |||||||| || ||| ||| ||| ||| ||||| || | Sbjct 9116 AACCCAGGACATTCATTGGGGCACATTAGTGTCCAATCCGCGTTCTTTTCAACACGCTTC 9175 Query 79384 ATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCG 79443 |||||||| ||||| ||||||| ||| ||| || || ||| || | || || | | Sbjct 9176 ATGAAGAGATCCGGAATCCACAAGGCATAGAAAAGATCACGGGCGCGGACTTCTTCCTTG 9235 Query 79444 CCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAG 79503 || |||||| || || || || || || | | || |||||||| ||||| |||||| Sbjct 9236 CCATGGTTCTTTCGAAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAG 9295 Query 79504 ATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTG 79563 | || || | ||| |||||| || || |||| |||||| | || ||||||||| Sbjct 9296 ACTGCAAATGCACCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTGTTG 9355 Query 79564 AAAACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTA 79623 |||||||| |||||||| |||||||||| || | ||||| || ||| ||| || | Sbjct 9356 AAAACTCGTAGCATGGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATGCA 9415 Query 79624 CCGCTCGCCCGAATGTTCGAGCA-GTGGATTCCGATGCCCCCGGACCACTTGGAGATGTG 79682 || | || || || | | | | || || || || || || | || ||||| Sbjct 9416 CCAGTGGCACGGAT-TCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATCAT 9474 Query 79683 CGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAG 79742 || || |||||| || || || || || || || ||| ||||||||| | | || Sbjct 9475 AGCACATGTCTTGAGGGTATCATAAATACCATCAATACTGTCCTCCTTCATATCAATGAG 9534 Query 79743 GAAGCAGCTCGACATCTGTGGGTTGT-TCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGT 79801 |||||| || | ||| | |||| ||||| ||| ||| || || || | |||| Sbjct 9535 GAAGCATGATGAAAGCTG-AGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGT 9593 Query 79802 GCGTGAAGAACTTTTGGCTCATCAGATCGTACGTCTCCTTGACGCGCGGGAGGTCGTCGC 79861 | |||||| | || | | ||| || | ||| ||||| || ||| | || ||||| | Sbjct 9594 GTGTGAAGTATTTGTTGGACATAAGGTTGTAGGTCTCAATGGCGCTCTCGATATCGTCAC 9653 Query 79862 CGTGGATGCCGACCGCGACGCGCATGA 79888 |||| || || || || || ||||||| Sbjct 9654 CGTGAATACCAACGGCAACACGCATGA 9680 Score = 181 bits (200), Expect = 1e-40 Identities = 398/591 (67%), Gaps = 4/591 (1%) Strand=Plus/Minus Query 19116 TCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTCCGCGAGACATACG 19175 ||||||| || || || || || || || ||||| || | | | | ||||| ||| Sbjct 9680 TCATGCGTGTTGCCGTTGGTATTCACGGTGACGATATCGAGAGCGCCATTGAGACCTACA 9621 Query 19176 ACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAACGCCGGTACGA 19235 |||| ||| | | || | |||||| ||||| | || || |||||| ||| ||||| Sbjct 9620 ACCTTATGTCCAACAAATACTTCACACACGCCTCCCCTACACTTTTCTCCGCTGGTACAC 9561 Query 19236 -ACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGC 19294 |||| | ||| | || || ||||| | | ||||||||| ||||| ||||| || Sbjct 9560 CACAAGCT-CAGCTTTCATCATGCTTCCTCATTGATATGAAGGAGGACAGTATTGATGGT 9502 Query 19295 ATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGGATC 19354 || || || || |||||| || || ||||| || | || ||||| || || Sbjct 9501 ATTTATGATACCCTCAAGACATGTGCTATGATCTCTAAAAATGCTGGAGGTATTGGTCTC 9442 Query 19355 CAC-TGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAACGGAGTAGCCGA 19413 || | | | | ||||| | | |||| || ||| || || ||||| || | Sbjct 9441 AACATTCACAGA-ATCCGTGCCACTGGTGCATACATCGCCGGTACCAACGGTAACTCCAA 9383 Query 19414 CGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGGGG 19473 ||| ||||| || ||||| || || ||||||||||| || || |||||| |||| || || Sbjct 9382 CGGCATCGTACCCATGCTACGAGTTTTCAACAACACTGCTAGATACGTCGACCAAGGTGG 9323 Query 19474 CGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATGGA 19533 ||| || || | || || |||| || ||||| |||||||| || || | || Sbjct 9322 AAACAAGCGTCCTGGTGCATTTGCAGTCTATCTTGAGCCTTGGCACGCAGATGTTTTCGA 9263 Query 19534 TTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTCAC 19593 ||||| || || || |||||| || | || || | ||| || || || ||| Sbjct 9262 GTTCCTGGACCTTCGAAAGAACCATGGCAAGGAAGAAGTCCGCGCCCGTGATCTTTTCTA 9203 Query 19594 GGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGAATGGCACCT 19653 ||||||||||||||||| || |||||| || ||||| ||| ||| || ||| || Sbjct 9202 TGCCTTGTGGATTCCGGATCTCTTCATGAAGCGTGTTGAAAAGAACGCGGATTGGACACT 9143 Query 19654 GATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGGCGTT 19704 |||||||| | ||||| ||||| | | || || || ||||| | ||| Sbjct 9142 AATGTGCCCCAATGAATGTCCTGGGTTGGCTGATGTATATGGCGACGAGTT 9092 >seq3070 Length=35956 Score = 111 bits (122), Expect = 2e-19 Identities = 115/148 (78%), Gaps = 2/148 (1%) Strand=Plus/Minus Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTT 60031 ||||| || ||||| | |||||||| ||| || || || ||||||||| ||| || || Sbjct 28971 TTTGCTCAGCGTCTGGTTGCTTTTGC-TGCTGTTGAGGGCATCTTCTTCAGTGGATCATT 28913 Query 60032 CTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGA 60091 | | |||| ||||||||||| ||||||||| | ||| | || || | ||||||||| || Sbjct 28912 CGCTTCTATCTTCTGGCTCAAGAAGCGTGGCTTGATGGCTGGTCTCACTTTCTCCAATGA 28853 Query 60092 GCTGATTTCCCGGGACGAGGGCCTCCAT 60119 ||| || ||||| || || || |||||| Sbjct 28852 GCTCATCTCCCGTGATGAAGGTCTCCAT 28825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548500047818400