Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08-
07] 3,610 sequences; 36,184,363 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq60 192 6e-44
>seq60
Length=14677
Score = 192 bits (212), Expect = 6e-44
Identities = 501/758 (66%), Gaps = 12/758 (2%)
Strand=Plus/Minus
Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252
||||||| || ||| | ||||| ||||||||||| | | | | | |||||| |||
Sbjct 9680 TCATGCGTGTTGCCGTTGGTATTCACGGTGACGATATCGAGAGCGCCATTGAGACCTACA 9621
Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312
|| | ||| | | || ||||| || |||||| | || || || ||| |||||||||
Sbjct 9620 ACCTTATGTCCAACAAATACTTCACACACGCCTCCCCTACACTTTTCTCCGCTGGTACAC 9561
Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372
|| ||||| | || |||||||| | | |||||||| ||| || || || |
Sbjct 9560 CACAAGCTCAGCTTTCATCATGCTTCCTCATTGATATGAAGGAGGACAGTATTGATGGTA 9501
Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCC 53432
| || || || |||||| ||||| ||||| || | || ||||| ||| ||
Sbjct 9500 TTTATGATACCCTCAAGACATGTGCTATGATCTCTAAAAATGCTGGAGGTATTGGTCTCA 9441
Query 53433 AC-TGCTC-GAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGA 53490
|| | | | ||| ||||||| | || || ||| || || ||||| | || |
Sbjct 9440 ACATTCACAGAA--TCCGTGCCACTGGTGCATACATCGCCGGTACCAACGGTAACTCCAA 9383
Query 53491 TGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGG 53550
|| ||||| || ||||| || || ||||||||||| || | |||||| |||| |||||
Sbjct 9382 CGGCATCGTACCCATGCTACGAGTTTTCAACAACACTGCTAGATACGTCGACCAAGGTGG 9323
Query 53551 TGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGA 53610
||||| || | || || |||| || ||||| |||||||| || || | ||
Sbjct 9322 AAACAAGCGTCCTGGTGCATTTGCAGTCTATCTTGAGCCTTGGCACGCAGATGTTTTCGA 9263
Query 53611 GTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTAC 53670
||| || || || || ||| || || | ||||| | ||| |||||| || ||
Sbjct 9262 GTTCCTGGACCTTCGAAAGAACCATGGCAAGGAAGAAGTCCGCGCCCGTGATCTTTTCTA 9203
Query 53671 AGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCT 53730
|| ||||||||||||| ||||||||| | || || ||| ||| ||| ||| ||
Sbjct 9202 TGCCTTGTGGATTCCGGATCTCTTCATGAAGCGTGTTGAAAAGAACGCGGATTGGACACT 9143
Query 53731 GATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGAT 53790
|||||||| || || || || || | | ||| || || || |||||| | | |
Sbjct 9142 AATGTGCCCCAATGAATGTCCTGGGTTGGCTGATGTATATGGCGACGAGTTTGAAGCTCT 9083
Query 53791 GTATCGGACGTACGCAGTTCAGGGCCGCTACAAG----AAGAAGGTCAAGGCGCGTGAGG 53846
||| || || | || | || | || | | |||| |||| || | ||
Sbjct 9082 CTATGAGAGTTATG-AG---AAGGAAGGTAGAGGTCGCAAGACCATCAAAGCCCAAAAGC 9027
Query 53847 TATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGG 53906
| ||| | | || ||| || || ||||| |||| || | |||| |||||||
Sbjct 9026 TTTGGTACTCCATTCTCGAGGCTCAAACCGAGACCGGAAATCCATTCATGCTTTACAAGG 8967
Query 53907 ATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGC 53944
|| | |||| ||||||||||||| |||||| |||||
Sbjct 8966 ATGCATGCAACAAGAAGAGCAACCAAAAGAACCTCGGC 8929
Score = 84.2 bits (92), Expect = 2e-11
Identities = 140/199 (70%), Gaps = 4/199 (2%)
Strand=Plus/Minus
Query 55728 TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACA--GAAGAGTCTGATTGACATGAG 55785
|||||| ||||| ||| || ||||||||| | || ||| | | || || | |||
Sbjct 8162 TCAAGGCACTTTACAAGACCGTCTGGGAGATTTCTCAACGAACAAT-TG-TTCAAATGGC 8105
Query 55786 TGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCC 55845
|||||||||||||| | | |||||||| || || ||||||| |||| | | ||
Sbjct 8104 CGCTGATCGTGGTGCCTTTGTTGACCAGTCACAATCAATGAACATTCACATGAAAGACCC 8045
Query 55846 TTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGG 55905
|| ||| |||| | | || ||||| || ||| ||||| ||| |||||||| ||
Sbjct 8044 CACAATGGGCAAGATTACTTCCATGCATTTCGCCGGTTGGAAATTGGGTCTCAAGACCGG 7985
Query 55906 TATGTACTATCTGCGGACC 55924
|||||||| || || |||
Sbjct 7984 AATGTACTACCTCCGTACC 7966
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547191306878000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |