Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08-
07] 3,610 sequences; 36,184,363 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq1292 197 3e-45
seq443 163 7e-35
seq839 138 3e-27
seq60 102 2e-16
seq2364 96.9 8e-15
>seq1292
Length=3705
Score = 197 bits (218), Expect = 3e-45
Identities = 171/212 (81%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| | |||||||||||| || ||||||||||| || || | |||||| | |||||||
Sbjct 1959 AGGACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGTCCATCT 2018
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| || |||||||| |||||||| || ||||| || ||||| || | ||| |||||||||
Sbjct 2019 TCGAGTTGCTTGCCGGCGAAGATCAGACGTTGCTGATCAGGTGGGATTCCCTCCTTGTCC 2078
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| || || || |||||||| |||||| |||||||||||| ||||| ||
Sbjct 2079 TGGATCTTGGACTTGACATTGTCGATGGTATCAGAGGATTCAACCTCGAGGGTGATGGTT 2138
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| |||||||| || || || || | ||||||
Sbjct 2139 TTACCCGTGAGGGTTTTGACGAAGATCTGCAT 2170
>seq443
Length=6205
Score = 163 bits (180), Expect = 7e-35
Identities = 162/210 (77%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|||||| | || || | |||||| ||||| |||||||||||||| || || |||||
Sbjct 3335 ACGAAGGCGGAGCACCAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAGGGT 3394
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| |||||||| || || || || |||||||| | |||||||| || ||||||| ||
Sbjct 3395 GCGACCATCTTCGAGTTGTTTACCAGCGAAGATCAAACGTTGTTGATCCGGAGGAATGCC 3454
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
||||||||||||||||| || ||||| ||||||||||| || || ||||| ||
Sbjct 3455 CTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGACGACTCGACCTCAAG 3514
Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTAC 211102
|||||| ||||| || || |||||||| ||
Sbjct 3515 AGTGATGGTCTTGCCAGTAAGAGTCTTGAC 3544
Score = 143 bits (158), Expect = 6e-29
Identities = 159/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| | || || ||||||||||| |||||||| || || | || || | |||||
Sbjct 3117 AGGACCAAATGCAGTGTGGACTCTTTCTGGATGTTGTAGTCTGATAGAGTGCGGCCATCC 3176
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| || ||||| || || |||||||| ||||| ||||| || || | || ||||| ||
Sbjct 3177 TCAAGTTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGGATACCCTCCTTATCT 3236
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|| |||||| ||||||||| |||||||| || || |||||||| | ||||| |||
Sbjct 3237 TGAATCTTTGATTTCACGTTGTCGATGGTATCTGACGACTCAACCTCCAATGTGATTGTC 3296
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||||| || || ||||| || || | |||||
Sbjct 3297 TTTCCGGTAAGTGTCTTCACGAAGATTTGCAT 3328
>seq839
Length=32500
Score = 138 bits (152), Expect = 3e-27
Identities = 138/179 (77%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986
||||||||||| || || | |||||| | ||| || || || ||||| || ||||||||
Sbjct 17539 TTTTGGATGTTGTAGTCTGAAAGGGTTCGTCCGTCCTCGAGTTGCTTTCCGGCGAAGATC 17598
Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046
| ||||||||||| || |||| ||| ||||||||||||||||| || || || ||
Sbjct 17599 AAACGTTGTTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCA 17658
Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105
|| || || ||| || ||||| || ||||| ||||||||||| || ||||| || ||
Sbjct 17659 ATAGTATCGGAGGACTCGACCTCAAGGGTGATGGTCTTTCCCGTAAGGGTCTTGACGAA 17717
>seq60
Length=14677
Score = 102 bits (112), Expect = 2e-16
Identities = 190/277 (69%), Gaps = 4/277 (1%)
Strand=Plus/Plus
Query 178093 GTTCTTTTGGTTGCTCTTTCTGCAAATGGCATCTTTGTACGCAATGAAGGGCATTCCCAC 178152
|||||||||||||||||| || ||||| ||||| ||||| || ||||
Sbjct 8935 GTTCTTTTGGTTGCTCTTCTTGTTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGT 8994
Query 178153 CTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCTTTTTGGC 178212
||| | ||||||| |||||||| | |||||||| |||||| || ||||| |
Sbjct 8995 CTCGGTTTGAGCCTCGAGAATGGAGTACCAAAGCTTTTGGGCTTTGATGGTCTTGCGACC 9054
Query 178213 TTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGACATCATC 178272
| | ||||| ||||| || | | ||||| | || || || ||||| |||||| |
Sbjct 9055 TCTACCTTCCTTCTCATAACTCTCATAGAGAGCTTCAAACTCGTCGCCATATACATCAGC 9114
Query 178273 GAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTT--CACTCGT 178330
| || ||| ||||||||||| | || |||| | ||| ||| || || ||
Sbjct 9115 CAACCCAGGACATTCATTGGGGCACATTAGTGTCCAAT--CCGCGTTCTTTTCAACACGC 9172
Query 178331 TTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAAAA 178367
||||||||||| || | |||| | |||||||||||
Sbjct 9173 TTCATGAAGAGATCCGGAATCCACAAGGCATAGAAAA 9209
>seq2364
Length=16216
Score = 96.9 bits (106), Expect = 8e-15
Identities = 128/175 (73%), Gaps = 6/175 (3%)
Strand=Plus/Minus
Query 139810 CCAAAGAAGCACGGAAGAGGAGGACAATCTGCTCTGCGTTTTGAAAGACTTCGAAAGGAA 139869
|| ||||||||||| | || || |||||||| ||||||||| | | ||||| |||||
Sbjct 12424 CCCAAGAAGCACGGTCGTGGTGGTCAATCTGCATTGCGTTTTGCACGTCTTCGTGAGGAA 12365
Query 139870 AAGAGGCACAACTACTTGAGAAAAGTTGCAGAGAACGCAATACAGTGTTTTATCA---AA 139926
||| | ||||||||| | | || ||||| ||| || | ||| ||| |||| |
Sbjct 12364 AAGCGCCACAACTACGTCCGTAAGGTTGCCGAGCTGGCTGTTCAGAATTTCATCACCGCA 12305
Query 139927 GACAACAAGTGTTTTGTTTCTGGTATTGTTTTGGCAGGTTCCGCAGAGTTCAAGA 139981
|||| |||| ||| |||||||| ||||||| |||||||| || || ||||
Sbjct 12304 GACA--AAGT-CAATGTAGCTGGTATTATTTTGGCTGGTTCCGCCGATTTTAAGA 12253
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159098385597650
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |