Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08- 07] 3,610 sequences; 36,184,363 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq443 91.5 1e-13 >seq443 Length=6205 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||||||| || ||| |||||| || || || || || | || || || | || ||| Sbjct 3120 ACCAAATGCAGTGTGGACTCTTTCTGGATGTTGTAGTCTGATAGAGTGCGGCCATCCTCA 3179 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCAT 39194 || || || || ||||| |||||||| |||||||| |||||| | | ||| || || | Sbjct 3180 AGTTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGG-ATACCCTCCTTATCT-T 3237 Query 39195 GATTTTCTGTTTGAGCGTCGCC-ACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 || | | || || ||| | | | ||||| |||||| || |||| ||||| | | Sbjct 3238 GAATCTTTGATTTCACGTTGTCGATGGTATCTGACGACTCAACCTCCAATGTGATTGTCT 3297 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| || || || || || ||||||||||| Sbjct 3298 TTCCGGTAAGTGTCTTCACGAAGATTTGCAT 3328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429526701335930