Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08- 07] 3,610 sequences; 36,184,363 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq443 149 1e-30 seq1292 140 8e-28 seq3116 102 2e-16 seq839 98.7 2e-15 seq2444 93.3 1e-13 seq2786 86.0 1e-11 >seq443 Length=6205 Score = 149 bits (164), Expect = 1e-30 Identities = 166/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | ||| | |||| || || || | |||||||| | | ||| Sbjct 2879 ACGAAGACGAAGCACCAAGTGCAAAGTGCTCTCCTTCTGAATGTTGTAATCAGAAAGAGT 2938 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 ||| ||||| || | |||||| ||||| ||||| | ||| |||||||| || |||||||| Sbjct 2939 TCTGCCATCCTCCAACTGCTTTCCAGCAAAGATCAATCGCTGTTGGTCCGGTGGAATACC 2998 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||||| |||||| ||| ||| || ||||| ||||| | |||||| || || Sbjct 2999 CTCCTTGTCTTGAATCTTTGACTTGACATTGTCAATGGTATCTGACGATTCCACTTCCAA 3058 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || ||||| || |||||||| || | ||| | ||||| Sbjct 3059 TGTAATGGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCAT 3100 Score = 134 bits (148), Expect = 3e-26 Identities = 154/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | ||| || |||||||||||||||| ||||| ||| || || Sbjct 3335 ACGAAGGCGGAGCACCAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAGGGT 3394 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| || || || ||||||||||| | |||||||| || || ||||| || Sbjct 3395 GCGACCATCTTCGAGTTGTTTACCAGCGAAGATCAAACGTTGTTGATCCGGAGGAATGCC 3454 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| |||||||| ||| || ||||||||||| || | || || || | Sbjct 3455 CTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGACGACTCGACCTCAAG 3514 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698 ||||| |||||||| || | ||| || Sbjct 3515 AGTGATGGTCTTGCCAGTAAGAGTCTT 3541 >seq1292 Length=3705 Score = 140 bits (154), Expect = 8e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | ||| ||||||||||| ||||||| ||||| |||| | || | |||||| Sbjct 1959 AGGACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGTCCATCT 2018 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || ||||| || |||||||| || ||||| || || || || || || |||||||| Sbjct 2019 TCGAGTTGCTTGCCGGCGAAGATCAGACGTTGCTGATCAGGTGGGATTCCCTCCTTGTCC 2078 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| ||| |||||||| || |||| ||| || || | ||||| || Sbjct 2079 TGGATCTTGGACTTGACATTGTCGATGGTATCAGAGGATTCAACCTCGAGGGTGATGGTT 2138 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || ||||| | ||||| | ||| | ||||| Sbjct 2139 TTACCCGTGAGGGTTTTGACGAAGATCTGCAT 2170 >seq3116 Length=12905 Score = 102 bits (112), Expect = 2e-16 Identities = 83/101 (82%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 370673 TCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGAT 370732 || || |||||||| |||||||| | |||||| || | |||||||| ||||| || | | Sbjct 3148 TCTGGGTGACCAAAGAATCAGAAAAGATGTTGGTATAATATAGGATCACCTCCTCCCGCT 3207 Query 370733 GGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAAAAC 370773 | |||||||| ||||||||||||||||||||||||||| Sbjct 3208 GCTTCAAAAAATGAAGTATTAAAATTTCTATCAGTTAAAAC 3248 >seq839 Length=32500 Score = 98.7 bits (108), Expect = 2e-15 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 ||||||| ||||| || | | |||| || || || || ||||| || |||||||| Sbjct 17539 TTTTGGATGTTGTAGTCTGAAAGGGTTCGTCCGTCCTCGAGTTGCTTTCCGGCGAAGATC 17598 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 | ||||||||||| || ||||| || |||||||| |||||||| ||| ||| || Sbjct 17599 AAACGTTGTTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCA 17658 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 || || || |||| || || || | ||||| ||||| ||||| Sbjct 17659 ATAGTATCGGAGGACTCGACCTCAAGGGTGATGGTCTTTCCCGT 17702 >seq2444 Length=584 Score = 93.3 bits (102), Expect = 1e-13 Identities = 113/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 7566 TATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGATAGG 7625 ||| || || || ||||| | | ||||| |||||| | |||||||| | | ||||| Sbjct 2 TATAATAACAGCTCATGCTATATTAATGATATTCTTTATGGTTATGCCTGCATTAATAGG 61 Query 7626 CGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTTCCAAG 7685 ||||| || |||| || | ||||||||| | |||| || |||||||| || || || Sbjct 62 GGGTTTTGGTAATTTCTTAATGCCTTTAATGGTAGGTGGACCAGATATGGCATTCCCTAG 121 Query 7686 GCTTAACAATATAAGTTTTTGATTACTACCGCCT 7719 | || ||||||||||| ||| || |||| ||| Sbjct 122 ATTAAATAATATAAGTTTCTGACTATTACCACCT 155 >seq2786 Length=66226 Score = 86.0 bits (94), Expect = 1e-11 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| ||||||||||| |||||||| || || || || || ||||||||||| ||||| || Sbjct 27059 GAAAATTTGACCATCGGTAATAGAAATGACGTTAGTTGGAATATAAGCAGACACATCTCC 27118 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACC 4574 |||| || || | ||||| | ||||| | ||||||||||| Sbjct 27119 ACCTTGAGTCTCAATCACAGGAAGAGCTGTCAAGGATCCACCACC 27163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192476041705340