Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08- 07] 3,610 sequences; 36,184,363 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq60 307 1e-78 >seq60 Length=14677 Score = 307 bits (340), Expect = 1e-78 Identities = 1159/1792 (65%), Gaps = 42/1792 (2%) Strand=Plus/Plus Query 76770 TTCTT-ATCCAATGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACAT 76828 ||||| ||| | || |||||||| || | ||||||| | ||||| || |||||||| Sbjct 7924 TTCTTGATCGACGGTGAACTGAATAGGTGCGGATGCGGCCATGGTACGGAGGTAGTACAT 7983 Query 76829 ACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACT 76888 || || || ||||||| |||| ||| |||||||||| || | ||| | Sbjct 7984 TCCGGTCTTGAGACCCAATTTCCAACCGGCGAAATGCATGGAAGTAATCTTGCCCATTGT 8043 Query 76889 AGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGC 76948 || || || ||||| ||||| || || || || | || || || | |||||| Sbjct 8044 GGGGTCTTTCATGTGAATGTTCATTGATTGTGACTGGTCAACAAAGGCACCACGATCAGC 8103 Query 76949 CGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGAT 77008 ||||||| | ||| || ||||| ||| ||||| | || ||| ||| | ||||| Sbjct 8104 GGCCATTTGAACAATTGTTCGTTGAGAAATCTCCCAGACGGTCTTGTAAAGTGCCTTGAT 8163 Query 77009 ATCATCTGGAAGGTTTGTA---TTTTGAATGGAACCACCATCTGATATAATTGTATTCTT 77065 ||| |||||| ||| | | |||||||| |||||||| || | || || ||||| Sbjct 8164 GTCAGCTGGAATGTTGGGAATGTTTTGAATAGAACCACCGTCAGCGATGATGCGGTTCTT 8223 Query 77066 TATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTAACTAT 77125 || | || ||| ||| | | || | | | | || || || ||||| | Sbjct 8224 CATGTTGTCTGACCATAATCCCATGTCGACAAGATCCTTGAGCAGCCATGGGTTAACAAC 8283 Query 77126 TTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGA 77185 ||| |||||||||| ||| || | ||||| ||| || ||| || |||||||| | | Sbjct 8284 TTGGAATTCTCCAGCCAAGACACGACGAGAGTAGATGTTAGAAGTGTATGGTTCAAAGCA 8343 Query 77186 TTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACT 77245 || ||| || | |||||||| || || ||||||||||| || || | ||||| Sbjct 8344 CTCGTTGAAACCGAGAATTTGAGAGGTGCTGGCTGTTGGCATAGGAGCAACGAGCAAACT 8403 Query 77246 ATTTCTGAGACCATGTGTTCTGAT-TTTATCTTTTAGATATTTCCAATCCCAAAGATCTG 77304 || | || ||| ||| | |||| | |||| || || | ||| |||||||| || | Sbjct 8404 GTTGCGGACACCGTGTTGTTTGATGGATTTCTTCAAGCTA-TCCCAGTCCCAAAGGTCGG 8462 Query 77305 AAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAG-CATATGATCCATTA 77363 |||| ||| |||| | ||||||||| || || || | || || ||| || | Sbjct 8463 TAGGTGTAACTCCCCACATATCGTATTGAAGTTCGCCCTT-CGAGACAGGTGAGCCTTCG 8521 Query 77364 TATGTTTCATAAGGT--CCTTCTGTTTCAGCTAGTTCACAAC--TCGCTTCCAATGCTCC 77419 || || |||| |||| || || || ||| | || |||| || | ||| || | Sbjct 8522 TAAGTCTCAT-AGGTACCCAACTCCTT-AGCAA--TCTCAACGGACGATGTCAAAGCAGC 8577 Query 77420 GTAATAAATTGTTTCGAAAATCTTCTTATTGAGAT-CTTGTGCTTCAATACTATCAAACG 77478 || ||||| |||||||| || | | ||||| | |||| |||||| ||||| | Sbjct 8578 GTGGTAAATAGTTTCGAAGATTTGAATGTTGAGGTGCTTG-GCTTCAGGTGATTCAAATG 8636 Query 77479 GATAATGTAAAAG--AATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCT 77536 | |||| || || || ||| ||||| || | || ||||| || | | | ||||||| Sbjct 8637 G-TAATCGAAGAGCCAAGAAA-GCATCGGCAAGACCTTGAACACCGACAGCGATAGGTCG 8694 Query 77537 ATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTT 77596 ||| | |||| || | || ||||| | || || || || ||||| || || || Sbjct 8695 ATGACGGAAATTGCTCTTTCTGGCCTCTGGGACGGGGTAGTAGTTGATGTCAATGATCTT 8754 Query 77597 ATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAATCTTCC 77656 || | ||||| ||||| |||| | || || | || || | ||||| | |||| Sbjct 8755 GTTCAAGTTTCTGACAACGACTTGAGTAACCTCGTGAAGCTTTTGGAAATCGTAAGTTCC 8814 Query 77657 ATCTATAA----CAAACATGTT--CAAAGCTATAGATGCTAGATTACAAACTGCTACCTC 77710 || | | || | ||||| | ||| || || || | ||||| || || || Sbjct 8815 CTCATTCATGTCCACAAATGTTGGGAGAGCAATGGAAGCCAAGTTACAGCAAGCGACTTC 8874 Query 77711 ATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAG 77770 || | | | |||| | || || || || | ||| | || ||||| || Sbjct 8875 ATCTGGGGCAGAGTATTCGACAATTTCTGTGCACAAATTGGAGCTGCGAATGGTGCCGAG 8934 Query 77771 ATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGT 77830 || | |||||||||||| || ||||||| ||||| ||||| || || ||| | ||||| Sbjct 8935 GTTCTTTTGGTTGCTCTTCTTGTTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGT 8994 Query 77831 TTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATCATAGATTTGTA 77890 || | || | |||| ||| || | ||| | | |||| | || | ||| Sbjct 8995 CTCGGTTTGAGCCTCGAGAATGGAGTACCAAAGCTTTTGGGCTT---TGATGGTCTTG-- 9049 Query 77891 TCG-CCTCTCTCTT-----TCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAAC 77944 || ||||| ||| ||||| ||| || |||||| || || || | || Sbjct 9050 -CGACCTCTACCTTCCTTCTCATAACTCTCATAGAGAGCTTCAAACTCGTCGCCATATAC 9108 Query 77945 ATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAAC 78004 |||| |||| ||||| |||||||| |||||||| | || ||| || | | | | ||| Sbjct 9109 ATCAGCCAACCCAGGACATTCATTGGGGCACATTAGTGTCCAATCCGCGTTCTTTTCAAC 9168 Query 78005 TCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTC 78064 || ||||| |||||||| || ||||| | ||| || ||||| |||| | ||| Sbjct 9169 ACGCTTCATGAAGAGATCCGGAATCCACAAGGCATAGAAAAGATCACGGGCGCGGACTTC 9228 Query 78065 TTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTC 78124 ||| || || |||||| ||| || || ||||| | || ||| | ||||| || || Sbjct 9229 TTCCTTGCCATGGTTCTTTCGAAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTC 9288 Query 78125 TAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGT 78184 ||||| | ||| | | ||||| || || || || || || || | ||||| || || Sbjct 9289 AAGATAGACTGCAAATGCACCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGT 9348 Query 78185 GTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAAT 78244 ||| || |||||| | ||| || | || ||||| || | || || || || | || Sbjct 9349 GTTGTTGAAAACTCGTAGCATGGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGAT 9408 Query 78245 ATAACTTCCACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGA 78304 || ||| | || || || | |||| | || || ||||| || | ||||| Sbjct 9409 GTATGCACCAGTGGCACGGATTCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGA 9468 Query 78305 TATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTT 78364 || | ||| || || | ||||| || ||||| || |||||||| ||| |||| | Sbjct 9469 GATCATAGCACATGTCTTGAGGGTATCATAAATACCATCAATACTGTCCTCCTTCATATC 9528 Query 78365 AAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGA 78424 || || || || || | ||| || || || || || | ||| || || Sbjct 9529 AATGAGGAAGCATGATGAAAGCTGAGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGA 9588 Query 78425 TGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTC 78484 || || || || |||| | || | || ||||| || ||||| || || || || Sbjct 9589 GGCGTGTGTGAAGTATTTGTTGGACATAAGGTTGTAGGTCTCAATGGCGCTCTCGATATC 9648 Query 78485 -CCATTGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTC 78535 || | ||||| || || || |||||||| | ||| || || || | ||| Sbjct 9649 GTCACCG-TGAATACCAACGGCAACACGCATGATCATTTGTTGTGGACGTTC 9699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694637453070400