Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08-
07] 3,610 sequences; 36,184,363 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq60 307 1e-78
>seq60
Length=14677
Score = 307 bits (340), Expect = 1e-78
Identities = 1159/1792 (65%), Gaps = 42/1792 (2%)
Strand=Plus/Plus
Query 76770 TTCTT-ATCCAATGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACAT 76828
||||| ||| | || |||||||| || | ||||||| | ||||| || ||||||||
Sbjct 7924 TTCTTGATCGACGGTGAACTGAATAGGTGCGGATGCGGCCATGGTACGGAGGTAGTACAT 7983
Query 76829 ACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACT 76888
|| || || ||||||| |||| ||| |||||||||| || | ||| |
Sbjct 7984 TCCGGTCTTGAGACCCAATTTCCAACCGGCGAAATGCATGGAAGTAATCTTGCCCATTGT 8043
Query 76889 AGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGC 76948
|| || || ||||| ||||| || || || || | || || || | ||||||
Sbjct 8044 GGGGTCTTTCATGTGAATGTTCATTGATTGTGACTGGTCAACAAAGGCACCACGATCAGC 8103
Query 76949 CGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGAT 77008
||||||| | ||| || ||||| ||| ||||| | || ||| ||| | |||||
Sbjct 8104 GGCCATTTGAACAATTGTTCGTTGAGAAATCTCCCAGACGGTCTTGTAAAGTGCCTTGAT 8163
Query 77009 ATCATCTGGAAGGTTTGTA---TTTTGAATGGAACCACCATCTGATATAATTGTATTCTT 77065
||| |||||| ||| | | |||||||| |||||||| || | || || |||||
Sbjct 8164 GTCAGCTGGAATGTTGGGAATGTTTTGAATAGAACCACCGTCAGCGATGATGCGGTTCTT 8223
Query 77066 TATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTAACTAT 77125
|| | || ||| ||| | | || | | | | || || || ||||| |
Sbjct 8224 CATGTTGTCTGACCATAATCCCATGTCGACAAGATCCTTGAGCAGCCATGGGTTAACAAC 8283
Query 77126 TTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGA 77185
||| |||||||||| ||| || | ||||| ||| || ||| || |||||||| | |
Sbjct 8284 TTGGAATTCTCCAGCCAAGACACGACGAGAGTAGATGTTAGAAGTGTATGGTTCAAAGCA 8343
Query 77186 TTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACT 77245
|| ||| || | |||||||| || || ||||||||||| || || | |||||
Sbjct 8344 CTCGTTGAAACCGAGAATTTGAGAGGTGCTGGCTGTTGGCATAGGAGCAACGAGCAAACT 8403
Query 77246 ATTTCTGAGACCATGTGTTCTGAT-TTTATCTTTTAGATATTTCCAATCCCAAAGATCTG 77304
|| | || ||| ||| | |||| | |||| || || | ||| |||||||| || |
Sbjct 8404 GTTGCGGACACCGTGTTGTTTGATGGATTTCTTCAAGCTA-TCCCAGTCCCAAAGGTCGG 8462
Query 77305 AAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAG-CATATGATCCATTA 77363
|||| ||| |||| | ||||||||| || || || | || || ||| || |
Sbjct 8463 TAGGTGTAACTCCCCACATATCGTATTGAAGTTCGCCCTT-CGAGACAGGTGAGCCTTCG 8521
Query 77364 TATGTTTCATAAGGT--CCTTCTGTTTCAGCTAGTTCACAAC--TCGCTTCCAATGCTCC 77419
|| || |||| |||| || || || ||| | || |||| || | ||| || |
Sbjct 8522 TAAGTCTCAT-AGGTACCCAACTCCTT-AGCAA--TCTCAACGGACGATGTCAAAGCAGC 8577
Query 77420 GTAATAAATTGTTTCGAAAATCTTCTTATTGAGAT-CTTGTGCTTCAATACTATCAAACG 77478
|| ||||| |||||||| || | | ||||| | |||| |||||| ||||| |
Sbjct 8578 GTGGTAAATAGTTTCGAAGATTTGAATGTTGAGGTGCTTG-GCTTCAGGTGATTCAAATG 8636
Query 77479 GATAATGTAAAAG--AATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCT 77536
| |||| || || || ||| ||||| || | || ||||| || | | | |||||||
Sbjct 8637 G-TAATCGAAGAGCCAAGAAA-GCATCGGCAAGACCTTGAACACCGACAGCGATAGGTCG 8694
Query 77537 ATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTT 77596
||| | |||| || | || ||||| | || || || || ||||| || || ||
Sbjct 8695 ATGACGGAAATTGCTCTTTCTGGCCTCTGGGACGGGGTAGTAGTTGATGTCAATGATCTT 8754
Query 77597 ATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAATCTTCC 77656
|| | ||||| ||||| |||| | || || | || || | ||||| | ||||
Sbjct 8755 GTTCAAGTTTCTGACAACGACTTGAGTAACCTCGTGAAGCTTTTGGAAATCGTAAGTTCC 8814
Query 77657 ATCTATAA----CAAACATGTT--CAAAGCTATAGATGCTAGATTACAAACTGCTACCTC 77710
|| | | || | ||||| | ||| || || || | ||||| || || ||
Sbjct 8815 CTCATTCATGTCCACAAATGTTGGGAGAGCAATGGAAGCCAAGTTACAGCAAGCGACTTC 8874
Query 77711 ATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAG 77770
|| | | | |||| | || || || || | ||| | || ||||| ||
Sbjct 8875 ATCTGGGGCAGAGTATTCGACAATTTCTGTGCACAAATTGGAGCTGCGAATGGTGCCGAG 8934
Query 77771 ATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGT 77830
|| | |||||||||||| || ||||||| ||||| ||||| || || ||| | |||||
Sbjct 8935 GTTCTTTTGGTTGCTCTTCTTGTTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGT 8994
Query 77831 TTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATCATAGATTTGTA 77890
|| | || | |||| ||| || | ||| | | |||| | || | |||
Sbjct 8995 CTCGGTTTGAGCCTCGAGAATGGAGTACCAAAGCTTTTGGGCTT---TGATGGTCTTG-- 9049
Query 77891 TCG-CCTCTCTCTT-----TCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAAC 77944
|| ||||| ||| ||||| ||| || |||||| || || || | ||
Sbjct 9050 -CGACCTCTACCTTCCTTCTCATAACTCTCATAGAGAGCTTCAAACTCGTCGCCATATAC 9108
Query 77945 ATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAAC 78004
|||| |||| ||||| |||||||| |||||||| | || ||| || | | | | |||
Sbjct 9109 ATCAGCCAACCCAGGACATTCATTGGGGCACATTAGTGTCCAATCCGCGTTCTTTTCAAC 9168
Query 78005 TCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTC 78064
|| ||||| |||||||| || ||||| | ||| || ||||| |||| | |||
Sbjct 9169 ACGCTTCATGAAGAGATCCGGAATCCACAAGGCATAGAAAAGATCACGGGCGCGGACTTC 9228
Query 78065 TTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTC 78124
||| || || |||||| ||| || || ||||| | || ||| | ||||| || ||
Sbjct 9229 TTCCTTGCCATGGTTCTTTCGAAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTC 9288
Query 78125 TAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGT 78184
||||| | ||| | | ||||| || || || || || || || | ||||| || ||
Sbjct 9289 AAGATAGACTGCAAATGCACCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGT 9348
Query 78185 GTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAAT 78244
||| || |||||| | ||| || | || ||||| || | || || || || | ||
Sbjct 9349 GTTGTTGAAAACTCGTAGCATGGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGAT 9408
Query 78245 ATAACTTCCACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGA 78304
|| ||| | || || || | |||| | || || ||||| || | |||||
Sbjct 9409 GTATGCACCAGTGGCACGGATTCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGA 9468
Query 78305 TATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTT 78364
|| | ||| || || | ||||| || ||||| || |||||||| ||| |||| |
Sbjct 9469 GATCATAGCACATGTCTTGAGGGTATCATAAATACCATCAATACTGTCCTCCTTCATATC 9528
Query 78365 AAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGA 78424
|| || || || || | ||| || || || || || | ||| || ||
Sbjct 9529 AATGAGGAAGCATGATGAAAGCTGAGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGA 9588
Query 78425 TGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTC 78484
|| || || || |||| | || | || ||||| || ||||| || || || ||
Sbjct 9589 GGCGTGTGTGAAGTATTTGTTGGACATAAGGTTGTAGGTCTCAATGGCGCTCTCGATATC 9648
Query 78485 -CCATTGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTC 78535
|| | ||||| || || || |||||||| | ||| || || || | |||
Sbjct 9649 GTCACCG-TGAATACCAACGGCAACACGCATGATCATTTGTTGTGGACGTTC 9699
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694637453070400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |