Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08- 07] 3,610 sequences; 36,184,363 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq60 325 6e-84 >seq60 Length=14677 Score = 325 bits (360), Expect = 6e-84 Identities = 1166/1794 (65%), Gaps = 38/1794 (2%) Strand=Plus/Plus Query 75365 TTCTT-ATCCAACGTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACAT 75423 ||||| ||| | ||||||||||| || | |||||| | | ||||| || |||||||| Sbjct 7924 TTCTTGATCGACGGTGAACTGAATAGGTGCGGATGCGGCCATGGTACGGAGGTAGTACAT 7983 Query 75424 ACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACT 75483 || || || ||||||| |||| ||| |||||||||| || | ||| | Sbjct 7984 TCCGGTCTTGAGACCCAATTTCCAACCGGCGAAATGCATGGAAGTAATCTTGCCCATTGT 8043 Query 75484 CGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGC 75543 || || || ||||| ||||| || || || || | || || || | |||||| Sbjct 8044 GGGGTCTTTCATGTGAATGTTCATTGATTGTGACTGGTCAACAAAGGCACCACGATCAGC 8103 Query 75544 CGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGAT 75603 ||||||| | ||| || ||||| ||| ||||| | || ||| ||| | ||||| Sbjct 8104 GGCCATTTGAACAATTGTTCGTTGAGAAATCTCCCAGACGGTCTTGTAAAGTGCCTTGAT 8163 Query 75604 ATCATCTGGAAGATTTGTA---TTTTGAATGGATCCGCCATCAGATATAATTGTATTCTT 75660 ||| |||||| || | | |||||||| || || || |||| || || ||||| Sbjct 8164 GTCAGCTGGAATGTTGGGAATGTTTTGAATAGAACCACCGTCAGCGATGATGCGGTTCTT 8223 Query 75661 GATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACAAT 75720 || | || ||| ||| | ||| | | | | || || || ||||||| Sbjct 8224 CATGTTGTCTGACCATAATCCCATGTCGACAAGATCCTTGAGCAGCCATGGGTTAACAAC 8283 Query 75721 TTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGA 75780 ||| |||||||||| ||| || | |||| ||| || ||| || |||||||| | | Sbjct 8284 TTGGAATTCTCCAGCCAAGACACGACGAGAGTAGATGTTAGAAGTGTATGGTTCAAAGCA 8343 Query 75781 TTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACT 75840 || ||| || | |||||||| || || || |||||||| || || | ||||| Sbjct 8344 CTCGTTGAAACCGAGAATTTGAGAGGTGCTGGCTGTTGGCATAGGAGCAACGAGCAAACT 8403 Query 75841 ATTTCTGAGACCATGTGTTCTGATTT-TATCTTTTAGATATTTCCAATCCCAAAGATCTG 75899 || | || ||| ||| | |||| | |||| || ||| ||| |||||||| || | Sbjct 8404 GTTGCGGACACCGTGTTGTTTGATGGATTTCTTCAAGCTATC-CCAGTCCCAAAGGTCGG 8462 Query 75900 ATGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAG-CATATGATCCATTA 75958 ||| ||| |||| | ||||||||| || || || | || || ||| || | Sbjct 8463 TAGGTGTAACTCCCCACATATCGTATTGAAGTTCGCCCTT-CGAGACAGGTGAGCCTTCG 8521 Query 75959 TATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCC-TCT-AACGCACCGT 76016 || || || || || || || | ||| | || |||| | | | || ||| ||| Sbjct 8522 TAAGTCTCATAGGTACCCAACTCCTTAGCAA--TCTCAACGGACGATGTCAAAGCAGCGT 8579 Query 76017 AATAAATTGTTTCGAAAATCTTCTTATTAAGAT-CTTGCGCTTCAAGACTATCAAAAGGA 76075 ||||| |||||||| || | | || || | |||| |||||| | ||||| || Sbjct 8580 GGTAAATAGTTTCGAAGATTTGAATGTTGAGGTGCTTG-GCTTCAGGTGATTCAAATGG- 8637 Query 76076 TAATGTAAAAG--AATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTAT 76133 |||| || || || ||| ||||| || || || ||||| || | | | ||||||| || Sbjct 8638 TAATCGAAGAGCCAAGAAA-GCATCGGCAAGACCTTGAACACCGACAGCGATAGGTCGAT 8696 Query 76134 GTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTAT 76193 | | |||| || || ||||| | ||||| || || || || || || || | Sbjct 8697 GACGGAAATTGCTCTTTCTGGCCTCTGGGACGGGGTAGTAGTTGATGTCAATGATCTTGT 8756 Query 76194 TGAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATTTTCCAT 76253 | | ||||||||||| |||| | || || | || || | ||||| | |||| | Sbjct 8757 TCAAGTTTCTGACAACGACTTGAGTAACCTCGTGAAGCTTTTGGAAATCGTAAGTTCCCT 8816 Query 76254 CTATCA----CAAACATATTA--AGAGCTATAGATGCTAGATTACAAACGGCTACCTCAT 76307 | ||| || | || || ||||| || || || | ||||| || || |||| Sbjct 8817 CATTCATGTCCACAAATGTTGGGAGAGCAATGGAAGCCAAGTTACAGCAAGCGACTTCAT 8876 Query 76308 TAGCATTGGCA---TATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAA 76364 | |||| |||| | || || ||||| | ||| | || || || | Sbjct 8877 CTGG---GGCAGAGTATTCGACAATTTCTGTGCACAAATTGGAGCTGCGAATGGTGCCGA 8933 Query 76365 GATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAG 76424 | || | |||||||||||| ||||| |||| ||||| ||||| | || ||| |||| | Sbjct 8934 GGTTCTTTTGGTTGCTCTTCTTGTTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGG 8993 Query 76425 TTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATTATAGATTTGT 76484 | || | || | |||| ||| || | ||| | | ||||| || | || Sbjct 8994 TCTCGGTTTGAGCCTCGAGAATGGAGTACCAAAGCTTTTGGGCTTTGATGGTC--TTGCG 9051 Query 76485 ATCGCTTCTCTCTTTCATATTG-TGT-ATATAACCGTTCAAATTCATCTCCCCAAACATC 76542 | | || | || ||| || | | ||| | |||||| || || || | ||||| Sbjct 9052 ACCTCTACCTTCCTTCTCATAACTCTCATAGAGAGCTTCAAACTCGTCGCCATATACATC 9111 Query 76543 ATCCAAACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCG 76602 | |||| |||||||||||||| || ||||| | || ||| || | | | | ||| || Sbjct 9112 AGCCAACCCAGGACATTCATTGGGGCACATTAGTGTCCAATCCGCGTTCTTTTCAACACG 9171 Query 76603 TTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTC 76662 ||||| |||||||| || ||||| | ||| || ||||| |||| | |||||| Sbjct 9172 CTTCATGAAGAGATCCGGAATCCACAAGGCATAGAAAAGATCACGGGCGCGGACTTCTTC 9231 Query 76663 ATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAG 76722 || || |||||| ||| || |||||||| | || ||| | ||||| || || || Sbjct 9232 CTTGCCATGGTTCTTTCGAAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAG 9291 Query 76723 ATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTT 76782 ||| | || | |||| || || || || || || || || | ||||| |||||||| Sbjct 9292 ATAGACTGCAAATGCACCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTT 9351 Query 76783 ATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATA 76842 || |||||| | ||| || | |||||||| || |||| || || || | || || Sbjct 9352 GTTGAAAACTCGTAGCATGGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTA 9411 Query 76843 ACTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGAT 76902 ||| ||||| || | ||| || || || ||||| || |||||||||| Sbjct 9412 TGCACCAGTGGCACGGATTCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGAT 9471 Query 76903 TAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAG 76962 | |||||| || | || ||||| || || || ||||| || ||| |||| | || Sbjct 9472 CATAGCACATGTCTTGAGGGTATCATAAATACCATCAATACTGTCCTCCTTCATATCAAT 9531 Query 76963 AAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGC 77022 || || || || | ||| || || || || || | |||||| || || Sbjct 9532 GAGGAAGCATGATGAAAGCTGAGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGC 9591 Query 77023 ATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCT-TCTATATC-C 77080 || ||||| |||| | || | || ||||| || ||||| | ||| || ||||| Sbjct 9592 GTGTGTGAAGTATTTGTTGGACATAAGGTTGTAGGTCTCAATGGC-GCTCTCGATATCGT 9650 Query 77081 CATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACA 77134 || | ||||| || || || |||||||| | ||| || || || |||||| || Sbjct 9651 CACCG-TGAATACCAACGGCAACACGCATGATCATTTGTTGTGGACGTTCTGCA 9703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712902228835200