Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08-
07] 3,610 sequences; 36,184,363 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq60 325 6e-84
>seq60
Length=14677
Score = 325 bits (360), Expect = 6e-84
Identities = 1166/1794 (65%), Gaps = 38/1794 (2%)
Strand=Plus/Plus
Query 75365 TTCTT-ATCCAACGTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACAT 75423
||||| ||| | ||||||||||| || | |||||| | | ||||| || ||||||||
Sbjct 7924 TTCTTGATCGACGGTGAACTGAATAGGTGCGGATGCGGCCATGGTACGGAGGTAGTACAT 7983
Query 75424 ACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACT 75483
|| || || ||||||| |||| ||| |||||||||| || | ||| |
Sbjct 7984 TCCGGTCTTGAGACCCAATTTCCAACCGGCGAAATGCATGGAAGTAATCTTGCCCATTGT 8043
Query 75484 CGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGC 75543
|| || || ||||| ||||| || || || || | || || || | ||||||
Sbjct 8044 GGGGTCTTTCATGTGAATGTTCATTGATTGTGACTGGTCAACAAAGGCACCACGATCAGC 8103
Query 75544 CGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGAT 75603
||||||| | ||| || ||||| ||| ||||| | || ||| ||| | |||||
Sbjct 8104 GGCCATTTGAACAATTGTTCGTTGAGAAATCTCCCAGACGGTCTTGTAAAGTGCCTTGAT 8163
Query 75604 ATCATCTGGAAGATTTGTA---TTTTGAATGGATCCGCCATCAGATATAATTGTATTCTT 75660
||| |||||| || | | |||||||| || || || |||| || || |||||
Sbjct 8164 GTCAGCTGGAATGTTGGGAATGTTTTGAATAGAACCACCGTCAGCGATGATGCGGTTCTT 8223
Query 75661 GATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACAAT 75720
|| | || ||| ||| | ||| | | | | || || || |||||||
Sbjct 8224 CATGTTGTCTGACCATAATCCCATGTCGACAAGATCCTTGAGCAGCCATGGGTTAACAAC 8283
Query 75721 TTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGA 75780
||| |||||||||| ||| || | |||| ||| || ||| || |||||||| | |
Sbjct 8284 TTGGAATTCTCCAGCCAAGACACGACGAGAGTAGATGTTAGAAGTGTATGGTTCAAAGCA 8343
Query 75781 TTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACT 75840
|| ||| || | |||||||| || || || |||||||| || || | |||||
Sbjct 8344 CTCGTTGAAACCGAGAATTTGAGAGGTGCTGGCTGTTGGCATAGGAGCAACGAGCAAACT 8403
Query 75841 ATTTCTGAGACCATGTGTTCTGATTT-TATCTTTTAGATATTTCCAATCCCAAAGATCTG 75899
|| | || ||| ||| | |||| | |||| || ||| ||| |||||||| || |
Sbjct 8404 GTTGCGGACACCGTGTTGTTTGATGGATTTCTTCAAGCTATC-CCAGTCCCAAAGGTCGG 8462
Query 75900 ATGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAG-CATATGATCCATTA 75958
||| ||| |||| | ||||||||| || || || | || || ||| || |
Sbjct 8463 TAGGTGTAACTCCCCACATATCGTATTGAAGTTCGCCCTT-CGAGACAGGTGAGCCTTCG 8521
Query 75959 TATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCC-TCT-AACGCACCGT 76016
|| || || || || || || | ||| | || |||| | | | || ||| |||
Sbjct 8522 TAAGTCTCATAGGTACCCAACTCCTTAGCAA--TCTCAACGGACGATGTCAAAGCAGCGT 8579
Query 76017 AATAAATTGTTTCGAAAATCTTCTTATTAAGAT-CTTGCGCTTCAAGACTATCAAAAGGA 76075
||||| |||||||| || | | || || | |||| |||||| | ||||| ||
Sbjct 8580 GGTAAATAGTTTCGAAGATTTGAATGTTGAGGTGCTTG-GCTTCAGGTGATTCAAATGG- 8637
Query 76076 TAATGTAAAAG--AATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTAT 76133
|||| || || || ||| ||||| || || || ||||| || | | | ||||||| ||
Sbjct 8638 TAATCGAAGAGCCAAGAAA-GCATCGGCAAGACCTTGAACACCGACAGCGATAGGTCGAT 8696
Query 76134 GTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTAT 76193
| | |||| || || ||||| | ||||| || || || || || || || |
Sbjct 8697 GACGGAAATTGCTCTTTCTGGCCTCTGGGACGGGGTAGTAGTTGATGTCAATGATCTTGT 8756
Query 76194 TGAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATTTTCCAT 76253
| | ||||||||||| |||| | || || | || || | ||||| | |||| |
Sbjct 8757 TCAAGTTTCTGACAACGACTTGAGTAACCTCGTGAAGCTTTTGGAAATCGTAAGTTCCCT 8816
Query 76254 CTATCA----CAAACATATTA--AGAGCTATAGATGCTAGATTACAAACGGCTACCTCAT 76307
| ||| || | || || ||||| || || || | ||||| || || ||||
Sbjct 8817 CATTCATGTCCACAAATGTTGGGAGAGCAATGGAAGCCAAGTTACAGCAAGCGACTTCAT 8876
Query 76308 TAGCATTGGCA---TATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAA 76364
| |||| |||| | || || ||||| | ||| | || || || |
Sbjct 8877 CTGG---GGCAGAGTATTCGACAATTTCTGTGCACAAATTGGAGCTGCGAATGGTGCCGA 8933
Query 76365 GATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAG 76424
| || | |||||||||||| ||||| |||| ||||| ||||| | || ||| |||| |
Sbjct 8934 GGTTCTTTTGGTTGCTCTTCTTGTTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGG 8993
Query 76425 TTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATTATAGATTTGT 76484
| || | || | |||| ||| || | ||| | | ||||| || | ||
Sbjct 8994 TCTCGGTTTGAGCCTCGAGAATGGAGTACCAAAGCTTTTGGGCTTTGATGGTC--TTGCG 9051
Query 76485 ATCGCTTCTCTCTTTCATATTG-TGT-ATATAACCGTTCAAATTCATCTCCCCAAACATC 76542
| | || | || ||| || | | ||| | |||||| || || || | |||||
Sbjct 9052 ACCTCTACCTTCCTTCTCATAACTCTCATAGAGAGCTTCAAACTCGTCGCCATATACATC 9111
Query 76543 ATCCAAACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCG 76602
| |||| |||||||||||||| || ||||| | || ||| || | | | | ||| ||
Sbjct 9112 AGCCAACCCAGGACATTCATTGGGGCACATTAGTGTCCAATCCGCGTTCTTTTCAACACG 9171
Query 76603 TTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTC 76662
||||| |||||||| || ||||| | ||| || ||||| |||| | ||||||
Sbjct 9172 CTTCATGAAGAGATCCGGAATCCACAAGGCATAGAAAAGATCACGGGCGCGGACTTCTTC 9231
Query 76663 ATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAG 76722
|| || |||||| ||| || |||||||| | || ||| | ||||| || || ||
Sbjct 9232 CTTGCCATGGTTCTTTCGAAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAG 9291
Query 76723 ATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTT 76782
||| | || | |||| || || || || || || || || | ||||| ||||||||
Sbjct 9292 ATAGACTGCAAATGCACCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTT 9351
Query 76783 ATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATA 76842
|| |||||| | ||| || | |||||||| || |||| || || || | || ||
Sbjct 9352 GTTGAAAACTCGTAGCATGGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTA 9411
Query 76843 ACTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGAT 76902
||| ||||| || | ||| || || || ||||| || ||||||||||
Sbjct 9412 TGCACCAGTGGCACGGATTCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGAT 9471
Query 76903 TAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAG 76962
| |||||| || | || ||||| || || || ||||| || ||| |||| | ||
Sbjct 9472 CATAGCACATGTCTTGAGGGTATCATAAATACCATCAATACTGTCCTCCTTCATATCAAT 9531
Query 76963 AAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGC 77022
|| || || || | ||| || || || || || | |||||| || ||
Sbjct 9532 GAGGAAGCATGATGAAAGCTGAGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGC 9591
Query 77023 ATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCT-TCTATATC-C 77080
|| ||||| |||| | || | || ||||| || ||||| | ||| || |||||
Sbjct 9592 GTGTGTGAAGTATTTGTTGGACATAAGGTTGTAGGTCTCAATGGC-GCTCTCGATATCGT 9650
Query 77081 CATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACA 77134
|| | ||||| || || || |||||||| | ||| || || || |||||| ||
Sbjct 9651 CACCG-TGAATACCAACGGCAACACGCATGATCATTTGTTGTGGACGTTCTGCA 9703
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712902228835200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |