Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08- 07] 3,610 sequences; 36,184,363 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq443 181 2e-40 seq1292 176 9e-39 seq839 152 1e-31 seq3070 89.7 1e-12 >seq443 Length=6205 Score = 181 bits (200), Expect = 2e-40 Identities = 171/218 (78%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || |||| || | ||| ||||||||||||||||||||| Sbjct 3329 ACCACCACGAAGGCGGAGCACCAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCT 3388 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || ||||| ||||| || |||||||| || || ||||||||||||||||| || || Sbjct 3389 CAGGGTGCGACCATCTTCGAGTTGTTTACCAGCGAAGATCAAACGTTGTTGATCCGGAGG 3448 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||||||| |||||||| | || ||| | ||||| ||||| || | ||||| Sbjct 3449 AATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGACGACTCGAC 3508 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGA 283089 || |||||||| ||||| || || | |||||| |||| Sbjct 3509 CTCAAGAGTGATGGTCTTGCCAGTAAGAGTCTTGACGA 3546 Score = 178 bits (196), Expect = 3e-39 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||| || ||||| |||| || || ||||| || || || |||||||| |||| Sbjct 2873 ACCGCCACGAAGACGAAGCACCAAGTGCAAAGTGCTCTCCTTCTGAATGTTGTAATCAGA 2932 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || | ||||||||| | || || || ||||||||||| || |||||||| || Sbjct 2933 AAGAGTTCTGCCATCCTCCAACTGCTTTCCAGCAAAGATCAATCGCTGTTGGTCCGGTGG 2992 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||||||||||||| ||||||| || || | || || || || || | ||| || Sbjct 2993 AATACCCTCCTTGTCTTGAATCTTTGACTTGACATTGTCAATGGTATCTGACGATTCCAC 3052 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| | || || ||||| || ||||||||||| ||||| |||||||| Sbjct 3053 TTCCAATGTAATGGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCAT 3100 Score = 172 bits (190), Expect = 1e-37 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || ||||| |||| ||| | ||| ||||| |||||||||||||| | Sbjct 3101 ACCACCACGGAGACGAAGGACCAAATGCAGTGTGGACTCTTTCTGGATGTTGTAGTCTGA 3160 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||||||||| ||||| || || |||||||| | |||||| ||||| || Sbjct 3161 TAGAGTGCGGCCATCCTCAAGTTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGG 3220 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||||||||| ||||| ||||||| ||| ||| | ||||| || || || | || || Sbjct 3221 GATACCCTCCTTATCTTGAATCTTTGATTTCACGTTGTCGATGGTATCTGACGACTCAAC 3280 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||||| ||||| || || | ||||| ||||| || ||||| Sbjct 3281 CTCCAATGTGATTGTCTTTCCGGTAAGTGTCTTCACGAAGATTTGCAT 3328 Score = 127 bits (140), Expect = 4e-24 Identities = 155/206 (75%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTC-AG 282930 ||| ||||| || || || || ||||| | || || ||||| ||||||||||| Sbjct 3613 ACCGCCACGAAGACGGAGGACGAGATGGAGAGTAGACTCCTTTTGAATGTTGTAGTCGCT 3672 Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990 |||| || |||||||| || |||||||| || || |||||||| || |||||||| | Sbjct 3673 CAAG-GTACGGCCATCTTCAAGTTGTTTGCCCGCGAAGATCAAGCGCTGTTGGTCCGGGG 3731 Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCG 283049 |||| |||||||| || || ||| ||||| |||||| | |||||||| || | ||| Sbjct 3732 GAATTCCCTCCTTATCCTGAATC-TTGCTCTTTACGTTGTCGATAGTATCGCTGGACTCG 3790 Query 283050 ACTTCGAGAGTGATCGTCTTACCCGT 283075 || ||||| ||||| ||||| || || Sbjct 3791 ACCTCGAGGGTGATGGTCTTGCCGGT 3816 >seq1292 Length=3705 Score = 176 bits (194), Expect = 9e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || ||||| |||| || | ||| ||| ||||||||||||||||| | | Sbjct 1944 CCACCACGTAGACGAAGGACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAA 2003 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| ||||| || ||||| || ||||| ||||||| |||||| || ||| || Sbjct 2004 AGGGTGCGTCCATCTTCGAGTTGCTTGCCGGCGAAGATCAGACGTTGCTGATCAGGTGGG 2063 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| |||||||| | || || | ||||| || || || | ||| || Sbjct 2064 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTATCAGAGGATTCAACC 2123 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| || |||||||| | || || ||||| |||||||| Sbjct 2124 TCGAGGGTGATGGTTTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 2170 >seq839 Length=32500 Score = 152 bits (168), Expect = 1e-31 Identities = 141/179 (79%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 ||||||||||||||||| | ||| || || || ||||| ||||| || ||||| |||||| Sbjct 17539 TTTTGGATGTTGTAGTCTGAAAGGGTTCGTCCGTCCTCGAGTTGCTTTCCGGCGAAGATC 17598 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 |||||||||||||| ||||| ||||||||||| |||||||| | || || | || Sbjct 17599 AAACGTTGTTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCA 17658 Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 ||||| || || | ||||| || || ||||| ||||| ||||| | ||||| ||||| Sbjct 17659 ATAGTATCGGAGGACTCGACCTCAAGGGTGATGGTCTTTCCCGTAAGGGTCTTGACGAA 17717 >seq3070 Length=35956 Score = 89.7 bits (98), Expect = 1e-12 Identities = 144/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 230204 CGACGCTATTCCTTGCCGTCTTATCGGCATGAATGCTGATCTCATGGGGCAATATATCGA 230263 ||| ||| ||||||| ||| | |||||||| || | | ||| |||||| ||||| Sbjct 28717 CGAGGCTCTTCCTTGTGCACTTCTTGGCATGAACGCGAACTTGATGAAGCAATACATCGA 28658 Query 230264 ATTCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAA 230323 ||||| || |||||| | | || || || || ||||||| ||||| || || || Sbjct 28657 GTTCGTCGCCGATCGTCTCCTAGTTGCTCTTGGTAACGAGAAGGTGTACAAGTCTGCCAA 28598 Query 230324 CCCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCG 230383 ||| |||| || |||||| ||| || || || || || ||||||||||| ||| | Sbjct 28597 CCCATTCGACTTCATGGAGAACATCTCCCTAGCAGGCAAGACAAACTTCTTCGAGAAGAG 28538 Query 230384 TGTCAGCGATTATCAAAGGCCCGGTGT 230410 || | || || || | | | ||||| Sbjct 28537 AGTTGGTGACTACCAGAAGGCTGGTGT 28511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046690785040940