Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08-
07] 3,610 sequences; 36,184,363 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq1292 131 1e-25
seq443 118 8e-22
seq839 102 6e-17
>seq1292
Length=3705
Score = 131 bits (144), Expect = 1e-25
Identities = 158/213 (74%), Gaps = 4/213 (2%)
Strand=Plus/Plus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|||| |||||| ||| ||||||||||||||||| |||| || ||| | || ||
Sbjct 1962 ACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGTCCATCTTCG 2021
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|| ||||| ||||| ||||||| ||| |||||||| | || | || ||||| |||
Sbjct 2022 AGTTGCTTGCCGGCGAAGATCAGACGTTGCTGATCAGGTGGGATTCCCTCCTTGTCCTGG 2081
Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306
||||| ||| || ||| | ||||| || | |||||| ||||| | || || || |
Sbjct 2082 ATCTTGGACTTGACATTGT--CGATGGTATCAGAGGATTCAACCTCGAGGGTGATGGTTT 2139
Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCATGA 44339
| ||||||||||| || |||||||| |||||||
Sbjct 2140 TACCCGTGAGGGTTTTGACGAAGATCTGCATGA 2172
>seq443
Length=6205
Score = 118 bits (130), Expect = 8e-22
Identities = 158/214 (74%), Gaps = 8/214 (4%)
Strand=Plus/Plus
Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC--GAGTTGGCGCTCGTCG 44185
||||| ||| | ||||||||||| || ||||||||||| | ||||| || | ||
Sbjct 2891 CACCAAGTGCAAAGTGCTCTCCTTCTGAATGTTGTAATCAGAAAGAGTTCT-GC-CATCC 2948
Query 44186 TCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCC 44245
|||| |||||| || ||||||||||| ||||| || || | || | ||| ||||| ||
Sbjct 2949 TCCAACTGCTTTCCAGCAAAGATCAATCGCTGTTGGTCCGGTGGAATACCCTCCTTGTCT 3008
Query 44246 GTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCG 44303
||||| ||| || ||| | ||||| || | |||||||| |||| ||||| |
Sbjct 3009 TGAATCTTTGACTTGACATTGT--CAATGGTATCTGACGATTCCACTTCCAATGTAATGG 3066
Query 44304 TCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||||||| || | ||||| |||||||| |||||
Sbjct 3067 TCTTTCCGGTCAAAGTCTTGACGAAGATCTGCAT 3100
Score = 105 bits (116), Expect = 5e-18
Identities = 151/210 (72%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|||| || || ||| ||| || ||||||||||| || | || ||| | || ||
Sbjct 3120 ACCAAATGCAGTGTGGACTCTTTCTGGATGTTGTAGTCTGATAGAGTGCGGCCATCCTCA 3179
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|| ||||| || |||||||| | ||| ||||| || | || | ||| ||||| ||
Sbjct 3180 AGTTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGGATACCCTCCTTATCTTGA 3239
Query 44249 ATCTTCTGCTTCAATGTT-CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307
||||| || || | ||| | ||||| || | || || ||||||| || || |||||
Sbjct 3240 ATCTT-TGATTTCACGTTGTCGATGGTATCTGACGACTCAACCTCCAATGTGATTGTCTT 3298
Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||| || || ||||||||||||||||||||
Sbjct 3299 TCCGGTAAGTGTCTTCACGAAGATTTGCAT 3328
Score = 95.1 bits (104), Expect = 9e-15
Identities = 141/200 (71%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187
||||| |||||| ||| || |||||||||||||| ||| || ||| | || ||
Sbjct 3347 CACCAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAGGGTGCGACCATCTTC 3406
Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247
|| || || || || ||||||||||| || ||||| | ||| | || ||||| |||
Sbjct 3407 GAGTTGTTTACCAGCGAAGATCAAACGTTGTTGATCCGGAGGAATGCCCTCCTTGTCCTG 3466
Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307
||||| ||| | | | |||||||||| || || ||||| | || || |||||
Sbjct 3467 GATCTTGGACTTGACGTTGTCGATGGTGTCGGACGACTCGACCTCAAGAGTGATGGTCTT 3526
Query 44308 TCCCGTGAGGGTCTTCACGA 44327
|| || || ||||| ||||
Sbjct 3527 GCCAGTAAGAGTCTTGACGA 3546
>seq839
Length=32500
Score = 102 bits (112), Expect = 6e-17
Identities = 134/184 (73%), Gaps = 4/184 (2%)
Strand=Plus/Plus
Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207
|||||||||||||||| || | || || |||| || || ||||| ||||| ||||
Sbjct 17537 CCTTTTGGATGTTGTAGTCTGAAAGGGTTCGTCCGTCCTCGAGTTGCTTTCCGGCGAAGA 17596
Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265
||||||| || || || | || | || ||||| ||| ||||| ||| || |||
Sbjct 17597 TCAAACGTTGTTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 17656
Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325
| || || |||| ||| || ||||| | || || ||||||||||| |||||||| ||
Sbjct 17657 --CAATAGTATCGGAGGACTCGACCTCAAGGGTGATGGTCTTTCCCGTAAGGGTCTTGAC 17714
Query 44326 GAAG 44329
||||
Sbjct 17715 GAAG 17718
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359974561547370
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |