Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242955.1_202017-08- 07] 3,610 sequences; 36,184,363 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq1292 122 8e-23 seq443 116 3e-21 >seq1292 Length=3705 Score = 122 bits (134), Expect = 8e-23 Identities = 168/233 (72%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 41633 CCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCG 41692 ||||| || |||||||| | |||| || || ||| ||||| || ||||| |||||| Sbjct 1941 CCGCCACCACGTAGACGAAGGACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCG 2000 Query 41693 GAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCG 41752 || |||||||| | || ||||| |||||||||||||| ||||| || || || || | Sbjct 2001 GAAAGGGTGCGTCCATCTTCGAGTTGCTTGCCGGCGAAGATCAGACGTTGCTGATCAGGT 2060 Query 41753 GGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACT 41810 || | | |||||||||| ||| || ||| || | || | || || || | Sbjct 2061 GGGATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG--ATGGTATCAGAGGATT 2118 Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | ||||| | || || ||||||||||| || || || ||||| ||||||||| Sbjct 2119 CAACCTCGAGGGTGATGGTTTTACCCGTGAGGGTTTTGACGAAGATCTGCATG 2171 >seq443 Length=6205 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || ||||| | ||||| |||| |||||||||||||||||||| || || || Sbjct 2874 CCGCCACGAAGACGAAGCACCAAGTGCAAAGTGCTCTCCTTCTGAATGTTGTAATCAGAA 2933 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || | | || || | |||||| || || || |||| ||||||||||||| ||| Sbjct 2934 AGAGTTCTGCCATCCTCCAACTGCTTTCCAGCAAAGATCAATCGCTGTTGGTCCGGTGGA 2993 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||||| | ||| | |||| | || | | | || || ||| ||||| Sbjct 2994 ATACCCTCCTTGT-CTTGAATCTTTGACTTGACATTGTCAATGGTATCTGACGATTCCAC 3052 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || || || || || |||| ||||| ||||| |||||||| Sbjct 3053 TTCCAATGTAATGGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCAT 3100 Score = 104 bits (114), Expect = 2e-17 Identities = 149/205 (73%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || ||||| | || ||||| || || |||||| |||||||| |||||| Sbjct 3614 CCGCCACGAAGACGGAGGACGAGATGGAGAGTAGACTCCTTTTGAATGTTGTAGTCGCTC 3673 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||| || | || || || || ||||| ||||| |||| |||||||||||||| |||| Sbjct 3674 AAGGTACGGCCATCTTCAAGTTGTTTGCCCGCGAAGATCAAGCGCTGTTGGTCCGGGGGA 3733 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCT-TCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | | |||||| ||| ||| | ||||| | ||| | | | ||| ||||| ||||| | Sbjct 3734 ATTCCCTCCTTATCC-TGA-ATCTTGCTCTTTACGTTGTCGATAGTATCGCTGGACTCGA 3791 Query 41814 CCTCCACCGTTATCGTTTTACCCGT 41838 |||| | || || || || || || Sbjct 3792 CCTCGAGGGTGATGGTCTTGCCGGT 3816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462283138532000