Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242965.1_202017-08- 07] 3,606 sequences; 37,244,066 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq3071 102 8e-17 >seq3071 Length=13184 Score = 102 bits (112), Expect = 8e-17 Identities = 337/514 (66%), Gaps = 14/514 (3%) Strand=Plus/Plus Query 15914 TGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCC 15973 ||||| |||| ||| | || ||||||||||| || || || ||| || || || ||| Sbjct 5391 TGGTAGTCACCAACTCTCTTCTCGAAGAAGTTTGTCTTGCCTGCTAGGGAGATGTTCTCC 5450 Query 15974 ATAAAATCAAAGGGATTAGTAGCTGAAAATATCTTAGAGTACCCCAGTTCCGTAACTAAT 16033 || || || || || || | || | | ||| || || || | | | Sbjct 5451 ATGAAGTCGAATGGGTTGGCAGACTTGTACACCTTCTCGTTACCAAGAGCGACTAGGAGA 5510 Query 16034 CTATCTGCTACAAATTCTATATATTGACACATTAAGT-CGCAATTAATTCCTATAAGTCG 16092 | ||| || || || || || ||||| ||| |||| ||| || || || | |||| | Sbjct 5511 CGATCGGCGACGAACTCGATGTATTGCTTCATCAAGTTCGCG-TTCATGCCAAGAAGT-G 5568 Query 16093 TACC-GGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATAT 16151 || |||||||| | || || |||| |||||| ||| |||| || ||| | |||| || Sbjct 5569 CACAAGGAAGAGCCTCGGTCAAGAATTCTTGTTCGATCTCAACAGCCTCTGTGATGACAT 5628 Query 16152 C--GGT--GGCT-CGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGC 16206 | || | || | || || ||||||| || | ||| || | || ||||| Sbjct 5629 CTTGGACAGCCTGCTTGCTTG-GACGGTGC----TTCAAGTGGGAGAAGAGGAGGCACGC 5683 Query 16207 GAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGG 16266 ||||||| ||| || ||||| || | | ||| || || ||||| ||||| | || | Sbjct 5684 GAAGTCGGTATGGAGACCTTCATCACGGGAGATGAGCTCATTGGAGAAAGTGAGACCAGC 5743 Query 16267 CATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACC 16326 ||| || || ||||| | |||||| || | ||| ||||| || ||||| || || Sbjct 5744 CATCAAGCCACGCTTCTTGAGCCAGAAGATAGAAGCGAATGATCCACTGAAGAAGATGCC 5803 Query 16327 CTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCA 16386 |||||||| |||||||| | | || | || | |||| | ||| | ||||||| Sbjct 5804 CTCAACAGCAGCAAAAGCAACCAGACGCTGAGCAAAGGTAGAGTTTTTGTCTTGAATCCA 5863 Query 16387 TTTCTGTACCCATTCGGCTTTTTGTTTTATACAA 16420 | | |||| |||||||| | || || ||| Sbjct 5864 TCTGACAGCCCAGTCGGCTTTCTTCTTAATGCAA 5897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511391347995920