Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242965.1_202017-08-
07] 3,606 sequences; 37,244,066 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq1816 264 1e-65
seq3071 107 2e-18
>seq1816
Length=7458
Score = 264 bits (292), Expect = 1e-65
Identities = 1141/1775 (64%), Gaps = 33/1775 (2%)
Strand=Plus/Minus
Query 52808 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 52867
||||| ||||| || |||||||||| | ||||| || ||||||||||| || || |||
Sbjct 6728 GTGAACTGAATAGGTGCGGATGCGGCCATGGTACGGAGGTAGTACATTCCGGTCTTGAGA 6669
Query 52868 CCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATA 52927
|| | |||| ||| |||||||| || | ||| | || ||| ||
Sbjct 6668 CCCAATTTCCAACCGGCGAAATGCATGGAAGTAATCTTGCCCATTGTGGGGTCTTTCATG 6609
Query 52928 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 52987
|| || ||||| ||||| || || | ||||| || | || || ||||||| |
Sbjct 6608 TGAATGTTCATTGATTGTGACTGGTCAACAAAGGCACCACGATCAGCGGCCATTTGAACA 6549
Query 52988 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 53047
|| || ||| | ||| ||||| | || || |||| | ||| || || |||||| |
Sbjct 6548 ATTGTTCGTTGAGAAATCTCCCAGACGGTCTTGTAAAGTGCCTTGATGTCAGCTGGAATG 6489
Query 53048 TTTGTA---TTCTGAATAGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTC 53104
|| | | || |||||||| |||||||| | || || | ||||| || | || |
Sbjct 6488 TTGGGAATGTTTTGAATAGAACCACCATCAGCGATGATACGGTTCTTCATGTTGTCTGAC 6429
Query 53105 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 53164
|||||| | ||| | | | | || || || ||||| ||||| |||||||||
Sbjct 6428 CATAATCCCATGTCGACAAGATCCTTGAGCAGCCATGGGTTAACAACTTGGAATTCTCCA 6369
Query 53165 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCC 53224
| ||| || | |||| ||| || ||| || || ||||| | |||| || ||
Sbjct 6368 GCCAAGACACGACGAGAGTAGATGTTAGAAGTGTATGGTTCAAAGCACTCGTTGAAACCG 6309
Query 53225 AAAATTTGAGCAGTTGATG-CAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 53283
| |||||||| || || || | || |||||||| || || | ||||| || | | |||
Sbjct 6308 AGAATTTGAG-AGGTGCTGGCTGTTGGCATAGGAGCAACGAGCAAACTGTTGCGGACACC 6250
Query 53284 GTATGTTCTGATTTTATCTTTTAGAGGT-TCCCAATTCCAAAGATCCGACGGTACAACNN 53342
|| | | |||| || | || || | ||||| | |||||| || | ||| |||
Sbjct 6249 GTGTTGTTTGATGG-ATTTCTTCAAGCTATCCCAGTCCCAAAGGTCGGTAGGTGTAACTC 6191
Query 53343 NNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATG 53402
||| || || || | | || ||| | || || || || |
Sbjct 6190 CCCACATATCGTATTGAAGTTCGCCCTTCGAGACAGGTGAGCCTTCGTAGGTCTCATAGG 6131
Query 53403 GTCCTTCCTTCTCAGCTAGTTCACAACTCGCC-TCT-AATGCACCGTAATAAATGGTTTC 53460
|| || || ||| | || |||| | | | || ||| ||| ||||| |||||
Sbjct 6130 TACCCAACTCCTTAGCAA--TCTCAACGGACGATGTCAAAGCAGCGTGGTAAATAGTTTC 6073
Query 53461 GAAGATCTTCTTATTTAGAT-CTTGTGCTTCCAGGCTAT-CAAATGGATAATTTAAGAGA 53518
|||||| | | || || | |||| ||||| ||| || ||||||| |||| |||||
Sbjct 6072 GAAGATTTGAATGTTGAGGTGCTTG-GCTTC-AGGTGATTCAAATGG-TAATCGAAGAGC 6016
Query 53519 -ATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGA 53577
| ||| || || || | ||||||||||| | | ||||||||| ||| | ||| |
Sbjct 6015 CAAAAAAGCATCGGCAAGACCTTGAACACCGACAGCGATAGGTCGATGACGGAAATT-GC 5957
Query 53578 GATTTCAG-CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTCTGA 53636
|||| | | ||||| | || || || || || || || || || || | ||||||||
Sbjct 5956 TCTTTCTGGCCTCTGGGACGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAGTTTCTGA 5897
Query 53637 CAATTACTTTGACCACATCCTTCAGTTTGAGAAAATC--AAATTGTC-CATCTAT-TACA 53692
||| |||| || || | || || | ||||| || || | ||| || | ||
Sbjct 5896 CAACGACTTGAGTAACCTCGTGAAGCTTTTGGAAATCGTAAGTTCCCTCATTCATGTCCA 5837
Query 53693 AACATGTTC--AATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCAT 53750
| ||||| | ||||| || |||| ||||| || || |||| | | | |
Sbjct 5836 CAAATGTTGGGAGAGCAATGGAAGCCAAGTTACAGCAAGCGACTTCATCTGGGGCAGAGT 5777
Query 53751 ATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTAC 53810
||| | || || ||||| | ||| | ||||| || | || | ||| || |
Sbjct 5776 ATTCGACAATTTCTGTGCACAAATTGGAGCTGCGAATGGTGCCGAGGTTCTTTTGGTTGC 5717
Query 53811 TCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATT 53870
|||| ||||| || |||||||| ||||| |||||||| | || || ||| | || | |
Sbjct 5716 TCTTCTTGTTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGTCTCAGTTTGAGCCT 5657
Query 53871 CTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTT 53930
| | ||| | | ||| | | || || || | || | |||| || ||
Sbjct 5656 CGAGAATGGAGTACCAAAGCTTTTGGGCTTTGATGGTC--TTGCGACCTCTACCTTCCTT 5599
Query 53931 CGTATAG-TGT-ATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACA 53988
| ||| | | ||| | |||||||||||| || | |||| |||| ||||||||
Sbjct 5598 CTCATAACTCTCATAGAGAGCTTCAAACTCGTCGCCATATACATCAGCCAACCCAGGACA 5539
Query 53989 TTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATC 54048
||||| || ||||| | | ||| || ||| | | || || ||||| ||||||||
Sbjct 5538 TTCATTGGGGCACATTAGTGTCCAATCCGCGTTCTTTTCAACACGCTTCATGAAGAGATC 5479
Query 54049 AGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCT 54107
|||||||| | || ||| || ||||| | || | ||| || || || ||||
Sbjct 5478 CGGAATCCACA-AGGCATAGAAAAGATCACGGGCGCGGACTTCTTCCTTGCCGTGGTTCT 5420
Query 54108 TTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAA 54167
|| || || |||||| | | || ||| | ||||| || || | || | | |
Sbjct 5419 TTCGGAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGACTGCAAATG 5360
Query 54168 CTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCA 54227
| ||||| || |||||||| || || || | ||||||||| |||||||| |||||| |
Sbjct 5359 CACCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTATTGAAAACTCGTA 5300
Query 54228 ACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCAC 54287
||| || | || || ||||| ||| ||||| |||| ||| || ||| ||||||
Sbjct 5299 GCATCGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATGCACCAGTGGCAC 5240
Query 54288 GAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTT 54347
| || | ||| ||||| || || || || |||||||||| | || ||| |
Sbjct 5239 GGATTCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATCATAGCACATGTCT 5180
Query 54348 TTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAG 54407
| | |||||||| || || || |||||||| ||| |||| | || || || || |
Sbjct 5179 TGAGGGTATCATAAATACCATCAATACTATCCTCCTTCATATCAATGAGGAAGCATGATG 5120
Query 54408 ACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATT 54467
| | || | || || || || | ||||| || ||||| || || |||
Sbjct 5119 AAAGCTGTGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGTGTGAAGTATT 5060
Query 54468 TTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATC-CCATTGATGAATTCCT 54526
| | || | || ||||| ||||| || || || ||||| || | ||||| ||
Sbjct 5059 TGTTGGACATAAGGTTGTAGGTCTCAATGGCGCTCTCGATATCGTCACCG-TGAATACCA 5001
Query 54527 ACTGCGACACGCATTAACATGTGCTGAGGTCTTTC 54561
|| || |||||||| | ||| ||||| || | |||
Sbjct 5000 ACGGCAACACGCATGATCATTTGCTGTGGACGTTC 4966
>seq3071
Length=13184
Score = 107 bits (118), Expect = 2e-18
Identities = 228/336 (68%), Gaps = 7/336 (2%)
Strand=Plus/Plus
Query 24355 TTGTCTCTATAGCATTAAAGAGATA-GtttttttCATTACTATCTTTAACATATGTATCA 24413
||||||| || ||||| |||||||| ||| || | | || |||| ||||||||
Sbjct 5953 TTGTCTCAATTGCATTGAAGAGATATGTTCGTTGGGCTTGT-TCCTTAATGTATGTATCG 6011
Query 24414 ATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAA 24473
|| | ||| || |||| || || ||||| || || ||||| || ||||||||
Sbjct 6012 ATGAGGAGAGAGTATGTTTCGGAGTGGATGTTCTCCATCATAATTTGGAAACCGTAGAAG 6071
Query 24474 CATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACT 24533
|| | |||||||| || || ||||| || || || || | | || || || |||
Sbjct 6072 CAACGAGCCTCGGGGATTTGAACTTCACCACTGAAGCGCTCGACAAGGTTCTCGTTGACT 6131
Query 24534 ATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC---- 24589
|||||||| ||||| || || || | || || || ||||| || ||
Sbjct 6132 ATTCCGTCGGATGCTGCGAAGAATGCGAGGACGTGAGAGATGAAATAGCGCTCATCATCA 6191
Query 24590 TGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCA 24649
| | ||| | ||||||||||| | | || || || | || | ||||| |||||||
Sbjct 6192 TTGAGTTTG-TTATTCCAATCGTGAAGGTCCTTTGACAAGTCGATCTCTTCTGCTGTCCA 6250
Query 24650 AAATGATGCCTCTGCCTTTTTATACATATTCCAGAT 24685
|| |||||||| |||||||| ||||| | ||||||
Sbjct 6251 GAAAGATGCCTCGGCCTTTTTGTACATTTGCCAGAT 6286
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593694837998880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |