Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242965.1_202017-08- 07] 3,606 sequences; 37,244,066 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1816 264 1e-65 seq3071 107 2e-18 >seq1816 Length=7458 Score = 264 bits (292), Expect = 1e-65 Identities = 1141/1775 (64%), Gaps = 33/1775 (2%) Strand=Plus/Minus Query 52808 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 52867 ||||| ||||| || |||||||||| | ||||| || ||||||||||| || || ||| Sbjct 6728 GTGAACTGAATAGGTGCGGATGCGGCCATGGTACGGAGGTAGTACATTCCGGTCTTGAGA 6669 Query 52868 CCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATA 52927 || | |||| ||| |||||||| || | ||| | || ||| || Sbjct 6668 CCCAATTTCCAACCGGCGAAATGCATGGAAGTAATCTTGCCCATTGTGGGGTCTTTCATG 6609 Query 52928 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 52987 || || ||||| ||||| || || | ||||| || | || || ||||||| | Sbjct 6608 TGAATGTTCATTGATTGTGACTGGTCAACAAAGGCACCACGATCAGCGGCCATTTGAACA 6549 Query 52988 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 53047 || || ||| | ||| ||||| | || || |||| | ||| || || |||||| | Sbjct 6548 ATTGTTCGTTGAGAAATCTCCCAGACGGTCTTGTAAAGTGCCTTGATGTCAGCTGGAATG 6489 Query 53048 TTTGTA---TTCTGAATAGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTC 53104 || | | || |||||||| |||||||| | || || | ||||| || | || | Sbjct 6488 TTGGGAATGTTTTGAATAGAACCACCATCAGCGATGATACGGTTCTTCATGTTGTCTGAC 6429 Query 53105 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 53164 |||||| | ||| | | | | || || || ||||| ||||| ||||||||| Sbjct 6428 CATAATCCCATGTCGACAAGATCCTTGAGCAGCCATGGGTTAACAACTTGGAATTCTCCA 6369 Query 53165 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCC 53224 | ||| || | |||| ||| || ||| || || ||||| | |||| || || Sbjct 6368 GCCAAGACACGACGAGAGTAGATGTTAGAAGTGTATGGTTCAAAGCACTCGTTGAAACCG 6309 Query 53225 AAAATTTGAGCAGTTGATG-CAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 53283 | |||||||| || || || | || |||||||| || || | ||||| || | | ||| Sbjct 6308 AGAATTTGAG-AGGTGCTGGCTGTTGGCATAGGAGCAACGAGCAAACTGTTGCGGACACC 6250 Query 53284 GTATGTTCTGATTTTATCTTTTAGAGGT-TCCCAATTCCAAAGATCCGACGGTACAACNN 53342 || | | |||| || | || || | ||||| | |||||| || | ||| ||| Sbjct 6249 GTGTTGTTTGATGG-ATTTCTTCAAGCTATCCCAGTCCCAAAGGTCGGTAGGTGTAACTC 6191 Query 53343 NNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATG 53402 ||| || || || | | || ||| | || || || || | Sbjct 6190 CCCACATATCGTATTGAAGTTCGCCCTTCGAGACAGGTGAGCCTTCGTAGGTCTCATAGG 6131 Query 53403 GTCCTTCCTTCTCAGCTAGTTCACAACTCGCC-TCT-AATGCACCGTAATAAATGGTTTC 53460 || || || ||| | || |||| | | | || ||| ||| ||||| ||||| Sbjct 6130 TACCCAACTCCTTAGCAA--TCTCAACGGACGATGTCAAAGCAGCGTGGTAAATAGTTTC 6073 Query 53461 GAAGATCTTCTTATTTAGAT-CTTGTGCTTCCAGGCTAT-CAAATGGATAATTTAAGAGA 53518 |||||| | | || || | |||| ||||| ||| || ||||||| |||| ||||| Sbjct 6072 GAAGATTTGAATGTTGAGGTGCTTG-GCTTC-AGGTGATTCAAATGG-TAATCGAAGAGC 6016 Query 53519 -ATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGA 53577 | ||| || || || | ||||||||||| | | ||||||||| ||| | ||| | Sbjct 6015 CAAAAAAGCATCGGCAAGACCTTGAACACCGACAGCGATAGGTCGATGACGGAAATT-GC 5957 Query 53578 GATTTCAG-CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTCTGA 53636 |||| | | ||||| | || || || || || || || || || || | |||||||| Sbjct 5956 TCTTTCTGGCCTCTGGGACGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAGTTTCTGA 5897 Query 53637 CAATTACTTTGACCACATCCTTCAGTTTGAGAAAATC--AAATTGTC-CATCTAT-TACA 53692 ||| |||| || || | || || | ||||| || || | ||| || | || Sbjct 5896 CAACGACTTGAGTAACCTCGTGAAGCTTTTGGAAATCGTAAGTTCCCTCATTCATGTCCA 5837 Query 53693 AACATGTTC--AATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCAT 53750 | ||||| | ||||| || |||| ||||| || || |||| | | | | Sbjct 5836 CAAATGTTGGGAGAGCAATGGAAGCCAAGTTACAGCAAGCGACTTCATCTGGGGCAGAGT 5777 Query 53751 ATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTAC 53810 ||| | || || ||||| | ||| | ||||| || | || | ||| || | Sbjct 5776 ATTCGACAATTTCTGTGCACAAATTGGAGCTGCGAATGGTGCCGAGGTTCTTTTGGTTGC 5717 Query 53811 TCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATT 53870 |||| ||||| || |||||||| ||||| |||||||| | || || ||| | || | | Sbjct 5716 TCTTCTTGTTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGTCTCAGTTTGAGCCT 5657 Query 53871 CTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTT 53930 | | ||| | | ||| | | || || || | || | |||| || || Sbjct 5656 CGAGAATGGAGTACCAAAGCTTTTGGGCTTTGATGGTC--TTGCGACCTCTACCTTCCTT 5599 Query 53931 CGTATAG-TGT-ATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACA 53988 | ||| | | ||| | |||||||||||| || | |||| |||| |||||||| Sbjct 5598 CTCATAACTCTCATAGAGAGCTTCAAACTCGTCGCCATATACATCAGCCAACCCAGGACA 5539 Query 53989 TTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATC 54048 ||||| || ||||| | | ||| || ||| | | || || ||||| |||||||| Sbjct 5538 TTCATTGGGGCACATTAGTGTCCAATCCGCGTTCTTTTCAACACGCTTCATGAAGAGATC 5479 Query 54049 AGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCT 54107 |||||||| | || ||| || ||||| | || | ||| || || || |||| Sbjct 5478 CGGAATCCACA-AGGCATAGAAAAGATCACGGGCGCGGACTTCTTCCTTGCCGTGGTTCT 5420 Query 54108 TTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAA 54167 || || || |||||| | | || ||| | ||||| || || | || | | | Sbjct 5419 TTCGGAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGACTGCAAATG 5360 Query 54168 CTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCA 54227 | ||||| || |||||||| || || || | ||||||||| |||||||| |||||| | Sbjct 5359 CACCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTATTGAAAACTCGTA 5300 Query 54228 ACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCAC 54287 ||| || | || || ||||| ||| ||||| |||| ||| || ||| |||||| Sbjct 5299 GCATCGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATGCACCAGTGGCAC 5240 Query 54288 GAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTT 54347 | || | ||| ||||| || || || || |||||||||| | || ||| | Sbjct 5239 GGATTCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATCATAGCACATGTCT 5180 Query 54348 TTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAG 54407 | | |||||||| || || || |||||||| ||| |||| | || || || || | Sbjct 5179 TGAGGGTATCATAAATACCATCAATACTATCCTCCTTCATATCAATGAGGAAGCATGATG 5120 Query 54408 ACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATT 54467 | | || | || || || || | ||||| || ||||| || || ||| Sbjct 5119 AAAGCTGTGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGTGTGAAGTATT 5060 Query 54468 TTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATC-CCATTGATGAATTCCT 54526 | | || | || ||||| ||||| || || || ||||| || | ||||| || Sbjct 5059 TGTTGGACATAAGGTTGTAGGTCTCAATGGCGCTCTCGATATCGTCACCG-TGAATACCA 5001 Query 54527 ACTGCGACACGCATTAACATGTGCTGAGGTCTTTC 54561 || || |||||||| | ||| ||||| || | ||| Sbjct 5000 ACGGCAACACGCATGATCATTTGCTGTGGACGTTC 4966 >seq3071 Length=13184 Score = 107 bits (118), Expect = 2e-18 Identities = 228/336 (68%), Gaps = 7/336 (2%) Strand=Plus/Plus Query 24355 TTGTCTCTATAGCATTAAAGAGATA-GtttttttCATTACTATCTTTAACATATGTATCA 24413 ||||||| || ||||| |||||||| ||| || | | || |||| |||||||| Sbjct 5953 TTGTCTCAATTGCATTGAAGAGATATGTTCGTTGGGCTTGT-TCCTTAATGTATGTATCG 6011 Query 24414 ATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAA 24473 || | ||| || |||| || || ||||| || || ||||| || |||||||| Sbjct 6012 ATGAGGAGAGAGTATGTTTCGGAGTGGATGTTCTCCATCATAATTTGGAAACCGTAGAAG 6071 Query 24474 CATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACT 24533 || | |||||||| || || ||||| || || || || | | || || || ||| Sbjct 6072 CAACGAGCCTCGGGGATTTGAACTTCACCACTGAAGCGCTCGACAAGGTTCTCGTTGACT 6131 Query 24534 ATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC---- 24589 |||||||| ||||| || || || | || || || ||||| || || Sbjct 6132 ATTCCGTCGGATGCTGCGAAGAATGCGAGGACGTGAGAGATGAAATAGCGCTCATCATCA 6191 Query 24590 TGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCA 24649 | | ||| | ||||||||||| | | || || || | || | ||||| ||||||| Sbjct 6192 TTGAGTTTG-TTATTCCAATCGTGAAGGTCCTTTGACAAGTCGATCTCTTCTGCTGTCCA 6250 Query 24650 AAATGATGCCTCTGCCTTTTTATACATATTCCAGAT 24685 || |||||||| |||||||| ||||| | |||||| Sbjct 6251 GAAAGATGCCTCGGCCTTTTTGTACATTTGCCAGAT 6286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593694837998880