Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242965.1_202017-08-
07] 3,606 sequences; 37,244,066 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq779 118 9e-22
seq3109 109 5e-19
>seq779
Length=13020
Score = 118 bits (130), Expect = 9e-22
Identities = 145/198 (73%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588
||||||||| | || || |||||||| |||||||| ||||||| ||||| ||| ||
Sbjct 2704 CACCAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAGGGTGCGACCATCTTC 2645
Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648
||| ||||| |||||| |||| | ||| || ||||| ||||| || |||||||||||
Sbjct 2644 GAGTTGTTTACCAGCGAAGATCAAACGTTGTTGATCCGGAGGAATACCCTCCTTGTCCTG 2585
Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708
|| || || || | |||| |||||| | ||||||||| | || | || ||
Sbjct 2584 GATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCGACCTCAAGAGTGATGGTCTT 2525
Query 118709 GCCGGTCAGAGTTTTTAC 118726
||| || ||||| || ||
Sbjct 2524 GCCAGTGAGAGTCTTGAC 2507
Score = 102 bits (112), Expect = 7e-17
Identities = 130/179 (73%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595
|||| |||||||| |||||||||||||| ||||||| || || ||| || || |||
Sbjct 2417 TGGAGAGTAGACTCCTTTTGAATGTTGTAGTCGCTCAAGGTACGGCCATCTTCAAGTTGT 2358
Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655
|| || ||| |||| | ||||| || || || || || |||||||| || ||| ||
Sbjct 2357 TTGCCTGCGAAGATCAAGCGCTGTTGGTCCGGGGGAATTCCCTCCTTATCCTGAATCTTG 2298
Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714
|| || | |||| ||| || || ||||||||||| ||| | || ||||||||
Sbjct 2297 CTCTTTACGTTGTCGATGGTATCGCTGGACTCGACCTCGAGGGTGATGGTCTTGCCGGT 2239
>seq3109
Length=11437
Score = 109 bits (120), Expect = 5e-19
Identities = 152/213 (71%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||||||| | || || || ||||| |||||||| ||| | ||||| ||| |||
Sbjct 9423 ACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGTCCATCTTCG 9364
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
|| || || || ||| |||| ||||| |||||||| || || || |||||||||||
Sbjct 9363 AGTTGCTTGCCGGCGAAGATCAGACGTTGCTGATCAGGTGGGATTCCCTCCTTGTCCTGG 9304
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709
|| || || || | |||| ||| || | | || ||||||| ||| | |||||
Sbjct 9303 ATCTTGGACTTGACATTGTCGATGGTATCAGAGGATTCAACCTCGAGGGTGATGGTTTTA 9244
Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742
|| || || ||||| || || ||||||||| ||
Sbjct 9243 CCCGTGAGGGTTTTGACGAAGATCTGCATGACT 9211
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433811333967352
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |