Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242965.1_202017-08- 07] 3,606 sequences; 37,244,066 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1816 279 6e-70 seq3071 91.5 2e-13 >seq1816 Length=7458 Score = 279 bits (308), Expect = 6e-70 Identities = 1149/1788 (64%), Gaps = 41/1788 (2%) Strand=Plus/Minus Query 62046 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62105 ||||| ||||| || |||||||||| | ||||| || ||||||||||| || || ||| Sbjct 6728 GTGAACTGAATAGGTGCGGATGCGGCCATGGTACGGAGGTAGTACATTCCGGTCTTGAGA 6669 Query 62106 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62165 || | |||| ||| |||||||| || | ||| | || ||| || Sbjct 6668 CCCAATTTCCAACCGGCGAAATGCATGGAAGTAATCTTGCCCATTGTGGGGTCTTTCATG 6609 Query 62166 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 62225 || || ||||| ||||| || || | ||||| || | || || ||||||| | Sbjct 6608 TGAATGTTCATTGATTGTGACTGGTCAACAAAGGCACCACGATCAGCGGCCATTTGAACA 6549 Query 62226 ATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 62285 || || ||| | ||| ||||| | || || |||| | ||| || || |||||| | Sbjct 6548 ATTGTTCGTTGAGAAATCTCCCAGACGGTCTTGTAAAGTGCCTTGATGTCAGCTGGAATG 6489 Query 62286 TTTGTA---TTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTC 62342 || | | || ||||| || |||||||| | || || | ||||| || | || | Sbjct 6488 TTGGGAATGTTTTGAATAGAACCACCATCAGCGATGATACGGTTCTTCATGTTGTCTGAC 6429 Query 62343 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCA 62402 |||||| | ||| | | | | || || |||||||| ||||||||||||||| Sbjct 6428 CATAATCCCATGTCGACAAGATCCTTGAGCAGCCATGGGTTAACAACTTGGAATTCTCCA 6369 Query 62403 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCC 62462 | ||| || | |||| ||| || ||| || || ||||| | |||| || || Sbjct 6368 GCCAAGACACGACGAGAGTAGATGTTAGAAGTGTATGGTTCAAAGCACTCGTTGAAACCG 6309 Query 62463 AAAATTTGAGCAGTTGATG-CAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 62521 | |||||||| || || || | || |||||||| || || | ||||| || | | ||| Sbjct 6308 AGAATTTGAG-AGGTGCTGGCTGTTGGCATAGGAGCAACGAGCAAACTGTTGCGGACACC 6250 Query 62522 GTATGTTCTGATTT-TATCTTTTAGATGTTCCCAATTCCAAAGATCCGACGGTACAACAN 62580 || | | |||| | |||| || | | |||| | |||||| || | ||| ||| Sbjct 6249 GTGTTGTTTGATGGATTTCTTCAAGCTAT-CCCAGTCCCAAAGGTCGGTAGGTGTAACTC 6191 Query 62581 NNNNNNNNNNATATTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCATATG 62640 ||||| || || || | | || ||| | || || ||||| | Sbjct 6190 CCCACATATCGTATTGAAGTTCGCCCTTCGAGACAGGTGAGCCTTCGTAGGTCTCATAGG 6131 Query 62641 GTCCTTCCTTCTCAGCTAGTTTACAACTCGCC-TCT-AATGCACCGTAATAAATGGTTTC 62698 || || || ||| | | |||| | | | || ||| ||| ||||| ||||| Sbjct 6130 TACCCAACTCCTTAGCAATCT--CAACGGACGATGTCAAAGCAGCGTGGTAAATAGTTTC 6073 Query 62699 AAAGATCTTCTTATTTAGAT-CTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGA- 62756 ||||| | | || || | |||| ||||| || |||||||| |||| ||||| Sbjct 6072 GAAGATTTGAATGTTGAGGTGCTTG-GCTTCAGGTGATTCAAATGG-TAATCGAAGAGCC 6015 Query 62757 ATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAG 62816 | ||| || || || | ||||||||||| | | ||||||||| ||| | ||| | Sbjct 6014 AAAAAAGCATCGGCAAGACCTTGAACACCGACAGCGATAGGTCGATGACGGAAATT-GCT 5956 Query 62817 ATTTCAG-CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGAC 62875 |||| | | ||||| | || || || || || || || || || || | |||||||| Sbjct 5955 CTTTCTGGCCTCTGGGACGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAGTTTCTGAC 5896 Query 62876 AATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA---TCGCCCATCTAT-TACAA 62931 || |||| || || | || || | ||||| | || | ||| || | || Sbjct 5895 AACGACTTGAGTAACCTCGTGAAGCTTTTGGAAATCGTAAGTTCCCTCATTCATGTCCAC 5836 Query 62932 ACATGTTC--AATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATA 62989 | ||||| | |||| || |||| ||||| || || |||| | | | || Sbjct 5835 AAATGTTGGGAGAGCAATGGAAGCCAAGTTACAGCAAGCGACTTCATCTGGGGCAGAGTA 5776 Query 62990 TTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACT 63049 || | || || ||||| | ||| | || || || | || | ||| || || Sbjct 5775 TTCGACAATTTCTGTGCACAAATTGGAGCTGCGAATGGTGCCGAGGTTCTTTTGGTTGCT 5716 Query 63050 CTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTC 63109 ||| ||||| || |||||||| ||||| ||||||||| | || || ||| | |||| || Sbjct 5715 CTTCTTGTTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGTCTCAGTTTGAGCCTC 5656 Query 63110 TATAATCGCTTTCCAGACGACTCGAGCCTTTATTATA----GATTTGTATCTCCTTTCTC 63165 | ||| | | ||| | | | || || || | || | || || | ||||| Sbjct 5655 GAGAATGGAGTACCAAAGCTTTTGGGCTTTGATGGTCTTGCGACCTCTACCTTCCTTCTC 5596 Query 63166 TT---TCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAG 63222 | || |||||| | | ||| |||||||| || | |||| |||| | || Sbjct 5595 ATAACTCTCATAGAG------AGC-TTCAAACTCGTCGCCATATACATCAGCCAACCCAG 5543 Query 63223 GACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGA 63282 ||||||||| || ||||| | | ||| || ||| | | || || ||||| |||| Sbjct 5542 GACATTCATTGGGGCACATTAGTGTCCAATCCGCGTTCTTTTCAACACGCTTCATGAAGA 5483 Query 63283 GATCAGGAATCCAAAGAGCTATA-AATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTA 63341 |||| |||||||| | || ||| || ||||| | | | ||| || || || Sbjct 5482 GATCCGGAATCCACA-AGGCATAGAAAAGATCACGGGCGCGGACTTCTTCCTTGCCGTGG 5424 Query 63342 TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCC 63401 |||||| || || |||||| | | || ||| | ||||| || || | || | || Sbjct 5423 TTCTTTCGGAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGACTGCA 5364 Query 63402 ATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 63461 | | ||||| || |||||||| || || || | ||||||||| |||||||| ||||| Sbjct 5363 AATGCACCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTATTGAAAACT 5304 Query 63462 CTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTG 63521 | | ||| || | || ||||| || |||| |||||||||| ||| || | ||| || Sbjct 5303 CGTAGCATCGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATGCACCAGTG 5244 Query 63522 GCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCAT 63581 ||||| || | ||| ||||| || || || || |||||||||| | || ||| Sbjct 5243 GCACGGATTCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATCATAGCACAT 5184 Query 63582 CGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAG 63641 || | || ||||| || || || || ||||| || |||| | || || || || Sbjct 5183 GTCTTGAGGGTATCATAAATACCATCAATACTATCCTCCTTCATATCAATGAGGAAGCAT 5124 Query 63642 CTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 63701 || | || | | || || || || | ||||| || ||||| || || Sbjct 5123 GATGAAAGCTGTGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGTGTGAAG 5064 Query 63702 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAAT 63760 |||| | || | || ||||| |||||||| || || ||||| || | ||||| Sbjct 5063 TATTTGTTGGACATAAGGTTGTAGGTCTCAATGGCGCTCTCGATATCGTCACCG-TGAAT 5005 Query 63761 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTT 63808 || || || |||||||| | ||| ||||| || | ||| ||| ||| Sbjct 5004 ACCAACGGCAACACGCATGATCATTTGCTGTGGACGTTCTGCAACTTT 4957 >seq3071 Length=13184 Score = 91.5 bits (100), Expect = 2e-13 Identities = 223/334 (67%), Gaps = 7/334 (2%) Strand=Plus/Plus Query 33804 GTTTCTATGGCATTAAAGAGATA-GtttttttCATTACTATCTTTAACATAAGTATCGAT 33862 || || || ||||| |||||||| ||| || | | || |||| || |||||||| Sbjct 5955 GTCTCAATTGCATTGAAGAGATATGTTCGTTGGGCTTGT-TCCTTAATGTATGTATCGAT 6013 Query 33863 CAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACA 33922 | ||| || |||| || || ||||| || || || || || |||||||| || Sbjct 6014 GAGGAGAGAGTATGTTTCGGAGTGGATGTTCTCCATCATAATTTGGAAACCGTAGAAGCA 6073 Query 33923 TCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTAT 33982 | |||||||| || || ||||| || || || || | | || || || ||||| Sbjct 6074 ACGAGCCTCGGGGATTTGAACTTCACCACTGAAGCGCTCGACAAGGTTCTCGTTGACTAT 6133 Query 33983 TCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC----TG 34038 ||| || ||||| || || || | || || || ||||| || || | Sbjct 6134 TCCGTCGGATGCTGCGAAGAATGCGAGGACGTGAGAGATGAAATAGCGCTCATCATCATT 6193 Query 34039 GTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAA 34098 | ||| ||| ||||||||| | | || || || | || | ||||| ||||||| | Sbjct 6194 GAGTTTGTT-ATTCCAATCGTGAAGGTCCTTTGACAAGTCGATCTCTTCTGCTGTCCAGA 6252 Query 34099 ATGATGCCTCTGCCTTTTTATACATATTCCAGAT 34132 | |||||||| |||||||| ||||| | |||||| Sbjct 6253 AAGATGCCTCGGCCTTTTTGTACATTTGCCAGAT 6286 Score = 84.2 bits (92), Expect = 3e-11 Identities = 294/454 (65%), Gaps = 4/454 (1%) Strand=Plus/Plus Query 33275 AGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCC 33334 || |||||| || || ||||| ||||| || | || ||||| || || || || || Sbjct 5372 AGCCATAACACCAGCCTTCTGGTAGTCACCAACTCTCTTCTCGAAGAAGTTTGTCTTGCC 5431 Query 33335 TTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAA 33394 | | | || || || |||||||| || || || |||| | ||||| | || | Sbjct 5432 TGCTAGGGAGATGTTCTCCATGAAGTCGAATGGGTTGGCAGACTTGTACACCTTCTCGT- 5490 Query 33395 TCCCAATTCAGAA-ATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCAT-TTCA 33452 | |||| || | | | ||| |||||||| || || ||| ||||||| ||| Sbjct 5491 TACCAAGAGCGACTAGGAGACGATCGGCGACGAACTCGATGTATTGCTTCATCAAGTTCG 5550 Query 33453 CAATTCATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGAT 33512 | ||||| || | ||| | ||||||||| | || | ||||||||||| || Sbjct 5551 CG-TTCATGCCAAGAAGTGCACAAGGAAGAGCCTCGGTCAAGAATTCTTGTTCGATCTCA 5609 Query 33513 ACCGCATTTGTTATAATAAATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTA 33572 || || | ||| || | | | || | | | || || | || || || Sbjct 5610 ACAGCCTCTGTGATGACATCTTGGACAGCCTGCTTGCTTGGACGGTGCTTCAAGTGGGAG 5669 Query 33573 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAA 33632 || | | || ||||| ||| || ||||| || || | || | || || || Sbjct 5670 AAGAGGAGGCACGCGAAGTCGGTATGGAGACCTTCATCACGGGAGATGAGCTCATTGGAG 5729 Query 33633 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCG 33692 || ||||| || | ||| | ||||||||| || ||||| || || |||||||||||||| Sbjct 5730 AAAGTGAGACCAGCCATCAAGCCACGCTTCTTGAGCCAGAAGATAGAAGCGAATGATCCA 5789 Query 33693 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAA 33726 |||||||| || || || |||||||| |||| Sbjct 5790 CTGAAGAAGATGCCCTCAACAGCAGCAAAAGCAA 5823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629789210971680