Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242965.1_202017-08-
07] 3,606 sequences; 37,244,066 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq1816 279 6e-70
seq3071 91.5 2e-13
>seq1816
Length=7458
Score = 279 bits (308), Expect = 6e-70
Identities = 1149/1788 (64%), Gaps = 41/1788 (2%)
Strand=Plus/Minus
Query 62046 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62105
||||| ||||| || |||||||||| | ||||| || ||||||||||| || || |||
Sbjct 6728 GTGAACTGAATAGGTGCGGATGCGGCCATGGTACGGAGGTAGTACATTCCGGTCTTGAGA 6669
Query 62106 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62165
|| | |||| ||| |||||||| || | ||| | || ||| ||
Sbjct 6668 CCCAATTTCCAACCGGCGAAATGCATGGAAGTAATCTTGCCCATTGTGGGGTCTTTCATG 6609
Query 62166 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 62225
|| || ||||| ||||| || || | ||||| || | || || ||||||| |
Sbjct 6608 TGAATGTTCATTGATTGTGACTGGTCAACAAAGGCACCACGATCAGCGGCCATTTGAACA 6549
Query 62226 ATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 62285
|| || ||| | ||| ||||| | || || |||| | ||| || || |||||| |
Sbjct 6548 ATTGTTCGTTGAGAAATCTCCCAGACGGTCTTGTAAAGTGCCTTGATGTCAGCTGGAATG 6489
Query 62286 TTTGTA---TTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTC 62342
|| | | || ||||| || |||||||| | || || | ||||| || | || |
Sbjct 6488 TTGGGAATGTTTTGAATAGAACCACCATCAGCGATGATACGGTTCTTCATGTTGTCTGAC 6429
Query 62343 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCA 62402
|||||| | ||| | | | | || || |||||||| |||||||||||||||
Sbjct 6428 CATAATCCCATGTCGACAAGATCCTTGAGCAGCCATGGGTTAACAACTTGGAATTCTCCA 6369
Query 62403 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCC 62462
| ||| || | |||| ||| || ||| || || ||||| | |||| || ||
Sbjct 6368 GCCAAGACACGACGAGAGTAGATGTTAGAAGTGTATGGTTCAAAGCACTCGTTGAAACCG 6309
Query 62463 AAAATTTGAGCAGTTGATG-CAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 62521
| |||||||| || || || | || |||||||| || || | ||||| || | | |||
Sbjct 6308 AGAATTTGAG-AGGTGCTGGCTGTTGGCATAGGAGCAACGAGCAAACTGTTGCGGACACC 6250
Query 62522 GTATGTTCTGATTT-TATCTTTTAGATGTTCCCAATTCCAAAGATCCGACGGTACAACAN 62580
|| | | |||| | |||| || | | |||| | |||||| || | ||| |||
Sbjct 6249 GTGTTGTTTGATGGATTTCTTCAAGCTAT-CCCAGTCCCAAAGGTCGGTAGGTGTAACTC 6191
Query 62581 NNNNNNNNNNATATTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCATATG 62640
||||| || || || | | || ||| | || || ||||| |
Sbjct 6190 CCCACATATCGTATTGAAGTTCGCCCTTCGAGACAGGTGAGCCTTCGTAGGTCTCATAGG 6131
Query 62641 GTCCTTCCTTCTCAGCTAGTTTACAACTCGCC-TCT-AATGCACCGTAATAAATGGTTTC 62698
|| || || ||| | | |||| | | | || ||| ||| ||||| |||||
Sbjct 6130 TACCCAACTCCTTAGCAATCT--CAACGGACGATGTCAAAGCAGCGTGGTAAATAGTTTC 6073
Query 62699 AAAGATCTTCTTATTTAGAT-CTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGA- 62756
||||| | | || || | |||| ||||| || |||||||| |||| |||||
Sbjct 6072 GAAGATTTGAATGTTGAGGTGCTTG-GCTTCAGGTGATTCAAATGG-TAATCGAAGAGCC 6015
Query 62757 ATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAG 62816
| ||| || || || | ||||||||||| | | ||||||||| ||| | ||| |
Sbjct 6014 AAAAAAGCATCGGCAAGACCTTGAACACCGACAGCGATAGGTCGATGACGGAAATT-GCT 5956
Query 62817 ATTTCAG-CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGAC 62875
|||| | | ||||| | || || || || || || || || || || | ||||||||
Sbjct 5955 CTTTCTGGCCTCTGGGACGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAGTTTCTGAC 5896
Query 62876 AATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA---TCGCCCATCTAT-TACAA 62931
|| |||| || || | || || | ||||| | || | ||| || | ||
Sbjct 5895 AACGACTTGAGTAACCTCGTGAAGCTTTTGGAAATCGTAAGTTCCCTCATTCATGTCCAC 5836
Query 62932 ACATGTTC--AATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATA 62989
| ||||| | |||| || |||| ||||| || || |||| | | | ||
Sbjct 5835 AAATGTTGGGAGAGCAATGGAAGCCAAGTTACAGCAAGCGACTTCATCTGGGGCAGAGTA 5776
Query 62990 TTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACT 63049
|| | || || ||||| | ||| | || || || | || | ||| || ||
Sbjct 5775 TTCGACAATTTCTGTGCACAAATTGGAGCTGCGAATGGTGCCGAGGTTCTTTTGGTTGCT 5716
Query 63050 CTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTC 63109
||| ||||| || |||||||| ||||| ||||||||| | || || ||| | |||| ||
Sbjct 5715 CTTCTTGTTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGTCTCAGTTTGAGCCTC 5656
Query 63110 TATAATCGCTTTCCAGACGACTCGAGCCTTTATTATA----GATTTGTATCTCCTTTCTC 63165
| ||| | | ||| | | | || || || | || | || || | |||||
Sbjct 5655 GAGAATGGAGTACCAAAGCTTTTGGGCTTTGATGGTCTTGCGACCTCTACCTTCCTTCTC 5596
Query 63166 TT---TCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAG 63222
| || |||||| | | ||| |||||||| || | |||| |||| | ||
Sbjct 5595 ATAACTCTCATAGAG------AGC-TTCAAACTCGTCGCCATATACATCAGCCAACCCAG 5543
Query 63223 GACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGA 63282
||||||||| || ||||| | | ||| || ||| | | || || ||||| ||||
Sbjct 5542 GACATTCATTGGGGCACATTAGTGTCCAATCCGCGTTCTTTTCAACACGCTTCATGAAGA 5483
Query 63283 GATCAGGAATCCAAAGAGCTATA-AATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTA 63341
|||| |||||||| | || ||| || ||||| | | | ||| || || ||
Sbjct 5482 GATCCGGAATCCACA-AGGCATAGAAAAGATCACGGGCGCGGACTTCTTCCTTGCCGTGG 5424
Query 63342 TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCC 63401
|||||| || || |||||| | | || ||| | ||||| || || | || | ||
Sbjct 5423 TTCTTTCGGAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGACTGCA 5364
Query 63402 ATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 63461
| | ||||| || |||||||| || || || | ||||||||| |||||||| |||||
Sbjct 5363 AATGCACCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTATTGAAAACT 5304
Query 63462 CTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTG 63521
| | ||| || | || ||||| || |||| |||||||||| ||| || | ||| ||
Sbjct 5303 CGTAGCATCGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATGCACCAGTG 5244
Query 63522 GCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCAT 63581
||||| || | ||| ||||| || || || || |||||||||| | || |||
Sbjct 5243 GCACGGATTCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATCATAGCACAT 5184
Query 63582 CGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAG 63641
|| | || ||||| || || || || ||||| || |||| | || || || ||
Sbjct 5183 GTCTTGAGGGTATCATAAATACCATCAATACTATCCTCCTTCATATCAATGAGGAAGCAT 5124
Query 63642 CTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 63701
|| | || | | || || || || | ||||| || ||||| || ||
Sbjct 5123 GATGAAAGCTGTGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGTGTGAAG 5064
Query 63702 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAAT 63760
|||| | || | || ||||| |||||||| || || ||||| || | |||||
Sbjct 5063 TATTTGTTGGACATAAGGTTGTAGGTCTCAATGGCGCTCTCGATATCGTCACCG-TGAAT 5005
Query 63761 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTT 63808
|| || || |||||||| | ||| ||||| || | ||| ||| |||
Sbjct 5004 ACCAACGGCAACACGCATGATCATTTGCTGTGGACGTTCTGCAACTTT 4957
>seq3071
Length=13184
Score = 91.5 bits (100), Expect = 2e-13
Identities = 223/334 (67%), Gaps = 7/334 (2%)
Strand=Plus/Plus
Query 33804 GTTTCTATGGCATTAAAGAGATA-GtttttttCATTACTATCTTTAACATAAGTATCGAT 33862
|| || || ||||| |||||||| ||| || | | || |||| || ||||||||
Sbjct 5955 GTCTCAATTGCATTGAAGAGATATGTTCGTTGGGCTTGT-TCCTTAATGTATGTATCGAT 6013
Query 33863 CAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACA 33922
| ||| || |||| || || ||||| || || || || || |||||||| ||
Sbjct 6014 GAGGAGAGAGTATGTTTCGGAGTGGATGTTCTCCATCATAATTTGGAAACCGTAGAAGCA 6073
Query 33923 TCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTAT 33982
| |||||||| || || ||||| || || || || | | || || || |||||
Sbjct 6074 ACGAGCCTCGGGGATTTGAACTTCACCACTGAAGCGCTCGACAAGGTTCTCGTTGACTAT 6133
Query 33983 TCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC----TG 34038
||| || ||||| || || || | || || || ||||| || || |
Sbjct 6134 TCCGTCGGATGCTGCGAAGAATGCGAGGACGTGAGAGATGAAATAGCGCTCATCATCATT 6193
Query 34039 GTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAA 34098
| ||| ||| ||||||||| | | || || || | || | ||||| ||||||| |
Sbjct 6194 GAGTTTGTT-ATTCCAATCGTGAAGGTCCTTTGACAAGTCGATCTCTTCTGCTGTCCAGA 6252
Query 34099 ATGATGCCTCTGCCTTTTTATACATATTCCAGAT 34132
| |||||||| |||||||| ||||| | ||||||
Sbjct 6253 AAGATGCCTCGGCCTTTTTGTACATTTGCCAGAT 6286
Score = 84.2 bits (92), Expect = 3e-11
Identities = 294/454 (65%), Gaps = 4/454 (1%)
Strand=Plus/Plus
Query 33275 AGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCC 33334
|| |||||| || || ||||| ||||| || | || ||||| || || || || ||
Sbjct 5372 AGCCATAACACCAGCCTTCTGGTAGTCACCAACTCTCTTCTCGAAGAAGTTTGTCTTGCC 5431
Query 33335 TTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAA 33394
| | | || || || |||||||| || || || |||| | ||||| | || |
Sbjct 5432 TGCTAGGGAGATGTTCTCCATGAAGTCGAATGGGTTGGCAGACTTGTACACCTTCTCGT- 5490
Query 33395 TCCCAATTCAGAA-ATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCAT-TTCA 33452
| |||| || | | | ||| |||||||| || || ||| ||||||| |||
Sbjct 5491 TACCAAGAGCGACTAGGAGACGATCGGCGACGAACTCGATGTATTGCTTCATCAAGTTCG 5550
Query 33453 CAATTCATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGAT 33512
| ||||| || | ||| | ||||||||| | || | ||||||||||| ||
Sbjct 5551 CG-TTCATGCCAAGAAGTGCACAAGGAAGAGCCTCGGTCAAGAATTCTTGTTCGATCTCA 5609
Query 33513 ACCGCATTTGTTATAATAAATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTA 33572
|| || | ||| || | | | || | | | || || | || || ||
Sbjct 5610 ACAGCCTCTGTGATGACATCTTGGACAGCCTGCTTGCTTGGACGGTGCTTCAAGTGGGAG 5669
Query 33573 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAA 33632
|| | | || ||||| ||| || ||||| || || | || | || || ||
Sbjct 5670 AAGAGGAGGCACGCGAAGTCGGTATGGAGACCTTCATCACGGGAGATGAGCTCATTGGAG 5729
Query 33633 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCG 33692
|| ||||| || | ||| | ||||||||| || ||||| || || ||||||||||||||
Sbjct 5730 AAAGTGAGACCAGCCATCAAGCCACGCTTCTTGAGCCAGAAGATAGAAGCGAATGATCCA 5789
Query 33693 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAA 33726
|||||||| || || || |||||||| ||||
Sbjct 5790 CTGAAGAAGATGCCCTCAACAGCAGCAAAAGCAA 5823
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629789210971680
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