Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242965.1_202017-08- 07] 3,606 sequences; 37,244,066 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1816 269 4e-67 >seq1816 Length=7458 Score = 269 bits (298), Expect = 4e-67 Identities = 1149/1779 (65%), Gaps = 41/1779 (2%) Strand=Plus/Minus Query 78718 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 78777 ||||| ||||| || |||||||||| | ||||| || ||||||||||| || || ||| Sbjct 6728 GTGAACTGAATAGGTGCGGATGCGGCCATGGTACGGAGGTAGTACATTCCGGTCTTGAGA 6669 Query 78778 CCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 78837 || | |||| ||| ||||||||| || | ||| | || ||| || Sbjct 6668 CCCAATTTCCAACCGGCGAAATGCATGGAAGTAATCTTGCCCATTGTGGGGTCTTTCATG 6609 Query 78838 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 78897 || || ||||| ||||| || || | ||||| || | || || ||||||| | Sbjct 6608 TGAATGTTCATTGATTGTGACTGGTCAACAAAGGCACCACGATCAGCGGCCATTTGAACA 6549 Query 78898 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 78957 || || ||| | ||| ||||| | || || |||| | ||| || || |||||| | Sbjct 6548 ATTGTTCGTTGAGAAATCTCCCAGACGGTCTTGTAAAGTGCCTTGATGTCAGCTGGAATG 6489 Query 78958 TTTGTA---TTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTC 79014 || | | || ||||| || |||||||| || || || | ||||| || | || | Sbjct 6488 TTGGGAATGTTTTGAATAGAACCACCATCAGCGATGATACGGTTCTTCATGTTGTCTGAC 6429 Query 79015 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 79074 |||||| | ||| | | | | || || || ||||| ||||| ||||||||| Sbjct 6428 CATAATCCCATGTCGACAAGATCCTTGAGCAGCCATGGGTTAACAACTTGGAATTCTCCA 6369 Query 79075 GACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCC 79134 | ||| || | |||| ||| || ||| || |||||||| | | || || || Sbjct 6368 GCCAAGACACGACGAGAGTAGATGTTAGAAGTGTATGGTTCAAAGCACTCGTTGAAACCG 6309 Query 79135 AAAATTTGAGCAGTTGATGCC-GTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 79193 | |||||||| || || || | ||||||||||| || || | ||||| || | | ||| Sbjct 6308 AGAATTTGAG-AGGTGCTGGCTGTTGGCATAGGAGCAACGAGCAAACTGTTGCGGACACC 6250 Query 79194 GTATGATCTGATTTTATCTTTTAGAGAT-TCCCAATCCCAAAGATCAGACGGGACAACAT 79252 || | | |||| || | || || | ||||| |||||||| || | || ||| Sbjct 6249 GTGTTGTTTGATGG-ATTTCTTCAAGCTATCCCAGTCCCAAAGGTCGGTAGGTGTAACTC 6191 Query 79253 TCCAAAGATCATATTGTAGAATACCGTTACTAG-CGTATGATCCTGTGTATGTTTCATAA 79311 ||| | ||| ||||| || || || | || | ||| ||| ||| || ||||| Sbjct 6190 CCCACATATCGTATTGAAGTTCGCCCTT-CGAGACAGGTGAGCCTTCGTAGGTCTCATAG 6132 Query 79312 GGTCCTTCCTTTTCGGCTAATTCACAACTCGCC-TCT-AATGCTCCGTAATAAATGGTTT 79369 | || || | || | || |||| | | | || || ||| ||||| |||| Sbjct 6131 GTACCCAACTCCTTAGCAA--TCTCAACGGACGATGTCAAAGCAGCGTGGTAAATAGTTT 6074 Query 79370 CGAAAATCTTCTTATTGAGAT-CTTGTGCTTCTAGGCTAT-CAAATGGATAATTTAAGAG 79427 |||| || | | ||||| | |||| ||||| ||| || ||||||| |||| ||||| Sbjct 6073 CGAAGATTTGAATGTTGAGGTGCTTG-GCTTC-AGGTGATTCAAATGG-TAATCGAAGAG 6017 Query 79428 A-ATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAG 79486 | ||| || || || | ||||||||||| | | ||||||||| ||| | ||| | Sbjct 6016 CCAAAAAAGCATCGGCAAGACCTTGAACACCGACAGCGATAGGTCGATGACGGAAATT-G 5958 Query 79487 AAATTTCAG-CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTCCTG 79545 |||| | | ||||| | || || || || || || || || || || | || ||| Sbjct 5957 CTCTTTCTGGCCTCTGGGACGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAGTTTCTG 5898 Query 79546 ACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCGTCCATCTATTA----C 79601 || | |||| || || | || || | ||||| | ||| || | | | Sbjct 5897 ACAACGACTTGAGTAACCTCGTGAAGCTTTTGGAAATCGTAAGTTCCCTCATTCATGTCC 5838 Query 79602 AAACATGTTC--AACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA 79659 | | ||||| | || | || |||| ||||| || || |||| | | | Sbjct 5837 ACAAATGTTGGGAGAGCAATGGAAGCCAAGTTACAGCAAGCGACTTCATCTGGGGCAGAG 5778 Query 79660 TATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTA 79719 |||| | ||||| ||||| | || | |||||| || | || | ||| || Sbjct 5777 TATTCGACAATTTCTGTGCACAAATTGGAGCTGCGAATGGTGCCGAGGTTCTTTTGGTTG 5718 Query 79720 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGAT 79779 ||||| ||||| || |||||||| ||||| ||||| ||| | || || ||| | |||| Sbjct 5717 CTCTTCTTGTTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGTCTCAGTTTGAGCC 5658 Query 79780 TCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGACTTGT-ATCTCTTTTCTCT 79838 || | ||| | | ||| | | | || || || | |||| | |||| || Sbjct 5657 TCGAGAATGGAGTACCAAAGCTTTTGGGCTTTGATGGT---CTTGCGACCTCTACCTTCC 5601 Query 79839 TTCGTATTG-TGT-ATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGA 79896 ||| || | | ||| | ||| |||||||| || | ||||| | || |||||| Sbjct 5600 TTCTCATAACTCTCATAGAGAGCTTCAAACTCGTCGCCATATACATCAGCCAACCCAGGA 5541 Query 79897 CATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTT--ACTCGTTTCATAAAGA 79954 ||||| | || ||||| | | ||| || | | || ||| || || ||||| |||| Sbjct 5540 CATTCATTGGGGCACATTAGTGTCCAATCCGCGT--TCTTTTCAACACGCTTCATGAAGA 5483 Query 79955 GATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTA 80013 |||| |||||||| | || ||| || ||||| | || | || || || || Sbjct 5482 GATCCGGAATCCACA-AGGCATAGAAAAGATCACGGGCGCGGACTTCTTCCTTGCCGTGG 5424 Query 80014 TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCC 80073 |||||| || || |||||| | | || ||| | ||||| || || | || | || Sbjct 5423 TTCTTTCGGAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGACTGCA 5364 Query 80074 ATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 80133 | | || || || |||||||| || || || | ||||||||| |||||||| ||||| Sbjct 5363 AATGCACCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTATTGAAAACT 5304 Query 80134 CTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTG 80193 | | ||| || | || || ||||| |||| ||||| |||| ||| || ||| || Sbjct 5303 CGTAGCATCGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATGCACCAGTG 5244 Query 80194 GCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCAT 80253 ||||| || | ||| ||||| || || || || |||||||||| | || ||| Sbjct 5243 GCACGGATTCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATCATAGCACAT 5184 Query 80254 CGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAG 80313 || | |||||||| || || || || ||||| || |||| | || || || || Sbjct 5183 GTCTTGAGGGTATCATAAATACCATCAATACTATCCTCCTTCATATCAATGAGGAAGCAT 5124 Query 80314 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 80373 || | || | || || || || | ||||| || ||||| || || Sbjct 5123 GATGAAAGCTGTGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGTGTGAAG 5064 Query 80374 CATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATC-CCATTGATGAAT 80432 |||| | |||| || ||||| |||||||| || || ||||| || | ||||| Sbjct 5063 TATTTGTTGGACATAAGGTTGTAGGTCTCAATGGCGCTCTCGATATCGTCACCG-TGAAT 5005 Query 80433 TCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTC 80471 || || || |||||||| | ||| ||||| || | ||| Sbjct 5004 ACCAACGGCAACACGCATGATCATTTGCTGTGGACGTTC 4966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718236424033840