Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242965.1_202017-08-
07] 3,606 sequences; 37,244,066 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq1816 212 8e-50
>seq1816
Length=7458
Score = 212 bits (234), Expect = 8e-50
Identities = 1140/1785 (64%), Gaps = 53/1785 (3%)
Strand=Plus/Minus
Query 70801 GTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCCTGTTTTTAGA 70860
|| |||||||| || | ||||||||| | ||||| || |||||||| || || || |||
Sbjct 6728 GTGAACTGAATAGGTGCGGATGCGGCCATGGTACGGAGGTAGTACATTCCGGTCTTGAGA 6669
Query 70861 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGA-ATAGCTAGGATCGGCTAT 70919
|| | |||| ||| |||||||| || | ||| || | | || || ||
Sbjct 6668 CCCAATTTCCAACCGGCGAAATGCATGGAAGTAATCTTGCCCATTG-TGGGGTCTTTCAT 6610
Query 70920 GTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 70979
|||||| ||||| || || || || | ||||| || | || || ||||||| |
Sbjct 6609 GTGAATGTTCATTGATTGTGACTGGTCAACAAAGGCACCACGATCAGCGGCCATTTGAAC 6550
Query 70980 GATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAG 71039
|| || ||| | ||| ||||| | || || |||| | ||| || || ||||||
Sbjct 6549 AATTGTTCGTTGAGAAATCTCCCAGACGGTCTTGTAAAGTGCCTTGATGTCAGCTGGAAT 6490
Query 71040 GTTTGTA---TTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATT 71096
||| | | || ||||| || |||||||| || || || | || || || | ||
Sbjct 6489 GTTGGGAATGTTTTGAATAGAACCACCATCAGCGATGATACGGTTCTTCATGTTGTCTGA 6430
Query 71097 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCC 71156
||||||| | ||| | | | | || || || ||||| ||||| ||||||||
Sbjct 6429 CCATAATCCCATGTCGACAAGATCCTTGAGCAGCCATGGGTTAACAACTTGGAATTCTCC 6370
Query 71157 AGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCC 71216
|| ||| || | ||||| ||| || ||| || || ||||| | |||| || ||
Sbjct 6369 AGCCAAGACACGACGAGAGTAGATGTTAGAAGTGTATGGTTCAAAGCACTCGTTGAAACC 6310
Query 71217 CAAAATTTGAGCAGTTGATG-CAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGAC 71275
| |||||||| || || || | || |||||||| || || | | ||| || | | ||
Sbjct 6309 GAGAATTTGAG-AGGTGCTGGCTGTTGGCATAGGAGCAACGAGCAAACTGTTGCGGACAC 6251
Query 71276 CATGT-----GATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGATCCGATGGTAC 71330
| ||| ||| |||||| ||| || || |||| | |||||| || | |||
Sbjct 6250 CGTGTTGTTTGAT-GGATTT---CTTCAAGCTAT-CCCAGTCCCAAAGGTCGGTAGGTGT 6196
Query 71331 AACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACTAG-CGTATGATCCTGCATATGTAT 71389
||| ||| || | || | ||| ||| | || || |
Sbjct 6195 AACTCCCCACATATCGTATTGAAGTTCGCCCTT-CGAGACAGGTGAGCCTTCGTAGGTCT 6137
Query 71390 CGTATGGT--CCTTCTTTTTCGGCTAGTTCACAACTCGCC-TCT-AATGCTCCATAATAA 71445
| || ||| || || || | | | || |||| | | | || || | | |||
Sbjct 6136 CATA-GGTACCCAACTCCTTAG-CAA--TCTCAACGGACGATGTCAAAGCAGCGTGGTAA 6081
Query 71446 ATGGTTTCGAAAATCTTCTTATTGAGAT-CTTGTGCTTCCGGGCTATCAAATGGATAATT 71504
|| |||||||| || | | ||||| | |||| ||||| || |||||||| ||||
Sbjct 6080 ATAGTTTCGAAGATTTGAATGTTGAGGTGCTTG-GCTTCAGGTGATTCAAATGG-TAATC 6023
Query 71505 TAAGAGA-ATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCT 71563
||||| | ||| || || || | |||||||| || | | ||||||||| || |
Sbjct 6022 GAAGAGCCAAAAAAGCATCGGCAAGACCTTGAACACCGACAGCGATAGGTCGATGACGGA 5963
Query 71564 TATTAGAAATTTCAG-CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGA 71622
||| | |||| | | ||||| | || || || || || || || || || || |
Sbjct 5962 AATT-GCTCTTTCTGGCCTCTGGGACGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAG 5904
Query 71623 TTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAA---TCTCCCATCT 71679
|||||||| | |||| || || | || || | ||||| | || | |||
Sbjct 5903 TTTCTGACAACGACTTGAGTAACCTCGTGAAGCTTTTGGAAATCGTAAGTTCCCTCATTC 5844
Query 71680 AT-TACAAACACGTTCA-AG-GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCA 71736
|| | || | | ||| || |||| || |||| ||||| || || |||| |
Sbjct 5843 ATGTCCACAAATGTTGGGAGAGCAATGGAAGCCAAGTTACAGCAAGCGACTTCATCTGGG 5784
Query 71737 TCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGT 71796
| | |||| | |||||| ||||| | ||| | ||||| || | || | |
Sbjct 5783 GCAGAGTATTCGACAATTTCTGTGCACAAATTGGAGCTGCGAATGGTGCCGAGGTTCTTT 5724
Query 71797 TGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATC 71856
|| || ||||| ||||| || |||||||| ||||| || || ||| | || || ||| |
Sbjct 5723 TGGTTGCTCTTCTTGTTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGTCTCAGTT 5664
Query 71857 TGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGT-ATCTCTT 71915
|||| || | ||| | | ||| | | | || || || | |||| | ||||
Sbjct 5663 TGAGCCTCGAGAATGGAGTACCAAAGCTTTTGGGCTTTGATGGT---CTTGCGACCTCTA 5607
Query 71916 TTCTCTTTCGTATTG-TGT-ATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAAT 71973
|| ||| || | | ||| | ||| |||||||| || | ||| | ||
Sbjct 5606 CCTTCCTTCTCATAACTCTCATAGAGAGCTTCAAACTCGTCGCCATATACATCAGCCAAC 5547
Query 71974 CCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTT--ACTCGTTTCA 72031
|||||||||||||| || ||||| | || ||| || | | || ||| || || ||||
Sbjct 5546 CCAGGACATTCATTGGGGCACATTAGTGTCCAATCCGCGT--TCTTTTCAACACGCTTCA 5489
Query 72032 TAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTT 72090
| |||||||| |||||||| | || ||| || ||||| | || | || || ||
Sbjct 5488 TGAAGAGATCCGGAATCCACA-AGGCATAGAAAAGATCACGGGCGCGGACTTCTTCCTTG 5430
Query 72091 CCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTAT 72150
|| |||||| || || |||||| | | || ||| | ||||| || || | ||
Sbjct 5429 CCGTGGTTCTTTCGGAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAG 5370
Query 72151 ATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 72210
| || | | || || || |||||||| || || || | ||||||||| ||||||||
Sbjct 5369 ACTGCAAATGCACCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTATTG 5310
Query 72211 TAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTT 72270
|||||| | ||| || | || || ||||| ||| ||||| |||| ||| ||
Sbjct 5309 AAAACTCGTAGCATCGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATGCA 5250
Query 72271 CCACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAAT 72330
||| ||||||| || || ||| ||||| || || || || |||||||||| |
Sbjct 5249 CCAGTGGCACGGATTCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATCATA 5190
Query 72331 GCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGA 72390
|| ||| || | |||||||| || || || |||||||| ||| |||| | || ||
Sbjct 5189 GCACATGTCTTGAGGGTATCATAAATACCATCAATACTATCCTCCTTCATATCAATGAGG 5130
Query 72391 AAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 72450
|| || || | || | || || || || | ||||| || |||||
Sbjct 5129 AAGCATGATGAAAGCTGTGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGT 5070
Query 72451 GTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATC-CCATTG 72509
|| || |||| | |||| || ||||| |||||||| || || ||||| || |
Sbjct 5069 GTGAAGTATTTGTTGGACATAAGGTTGTAGGTCTCAATGGCGCTCTCGATATCGTCACCG 5010
Query 72510 ATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTC 72554
|| || || || || |||||||| | ||| ||||| || | |||
Sbjct 5009 -TGAATACCAACGGCAACACGCATGATCATTTGCTGTGGACGTTC 4966
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671108948400560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |