Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242965.1_202017-08- 07] 3,606 sequences; 37,244,066 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1816 212 8e-50 >seq1816 Length=7458 Score = 212 bits (234), Expect = 8e-50 Identities = 1140/1785 (64%), Gaps = 53/1785 (3%) Strand=Plus/Minus Query 70801 GTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCCTGTTTTTAGA 70860 || |||||||| || | ||||||||| | ||||| || |||||||| || || || ||| Sbjct 6728 GTGAACTGAATAGGTGCGGATGCGGCCATGGTACGGAGGTAGTACATTCCGGTCTTGAGA 6669 Query 70861 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGA-ATAGCTAGGATCGGCTAT 70919 || | |||| ||| |||||||| || | ||| || | | || || || Sbjct 6668 CCCAATTTCCAACCGGCGAAATGCATGGAAGTAATCTTGCCCATTG-TGGGGTCTTTCAT 6610 Query 70920 GTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 70979 |||||| ||||| || || || || | ||||| || | || || ||||||| | Sbjct 6609 GTGAATGTTCATTGATTGTGACTGGTCAACAAAGGCACCACGATCAGCGGCCATTTGAAC 6550 Query 70980 GATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAG 71039 || || ||| | ||| ||||| | || || |||| | ||| || || |||||| Sbjct 6549 AATTGTTCGTTGAGAAATCTCCCAGACGGTCTTGTAAAGTGCCTTGATGTCAGCTGGAAT 6490 Query 71040 GTTTGTA---TTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATT 71096 ||| | | || ||||| || |||||||| || || || | || || || | || Sbjct 6489 GTTGGGAATGTTTTGAATAGAACCACCATCAGCGATGATACGGTTCTTCATGTTGTCTGA 6430 Query 71097 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCC 71156 ||||||| | ||| | | | | || || || ||||| ||||| |||||||| Sbjct 6429 CCATAATCCCATGTCGACAAGATCCTTGAGCAGCCATGGGTTAACAACTTGGAATTCTCC 6370 Query 71157 AGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCC 71216 || ||| || | ||||| ||| || ||| || || ||||| | |||| || || Sbjct 6369 AGCCAAGACACGACGAGAGTAGATGTTAGAAGTGTATGGTTCAAAGCACTCGTTGAAACC 6310 Query 71217 CAAAATTTGAGCAGTTGATG-CAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGAC 71275 | |||||||| || || || | || |||||||| || || | | ||| || | | || Sbjct 6309 GAGAATTTGAG-AGGTGCTGGCTGTTGGCATAGGAGCAACGAGCAAACTGTTGCGGACAC 6251 Query 71276 CATGT-----GATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGATCCGATGGTAC 71330 | ||| ||| |||||| ||| || || |||| | |||||| || | ||| Sbjct 6250 CGTGTTGTTTGAT-GGATTT---CTTCAAGCTAT-CCCAGTCCCAAAGGTCGGTAGGTGT 6196 Query 71331 AACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACTAG-CGTATGATCCTGCATATGTAT 71389 ||| ||| || | || | ||| ||| | || || | Sbjct 6195 AACTCCCCACATATCGTATTGAAGTTCGCCCTT-CGAGACAGGTGAGCCTTCGTAGGTCT 6137 Query 71390 CGTATGGT--CCTTCTTTTTCGGCTAGTTCACAACTCGCC-TCT-AATGCTCCATAATAA 71445 | || ||| || || || | | | || |||| | | | || || | | ||| Sbjct 6136 CATA-GGTACCCAACTCCTTAG-CAA--TCTCAACGGACGATGTCAAAGCAGCGTGGTAA 6081 Query 71446 ATGGTTTCGAAAATCTTCTTATTGAGAT-CTTGTGCTTCCGGGCTATCAAATGGATAATT 71504 || |||||||| || | | ||||| | |||| ||||| || |||||||| |||| Sbjct 6080 ATAGTTTCGAAGATTTGAATGTTGAGGTGCTTG-GCTTCAGGTGATTCAAATGG-TAATC 6023 Query 71505 TAAGAGA-ATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCT 71563 ||||| | ||| || || || | |||||||| || | | ||||||||| || | Sbjct 6022 GAAGAGCCAAAAAAGCATCGGCAAGACCTTGAACACCGACAGCGATAGGTCGATGACGGA 5963 Query 71564 TATTAGAAATTTCAG-CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGA 71622 ||| | |||| | | ||||| | || || || || || || || || || || | Sbjct 5962 AATT-GCTCTTTCTGGCCTCTGGGACGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAG 5904 Query 71623 TTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAA---TCTCCCATCT 71679 |||||||| | |||| || || | || || | ||||| | || | ||| Sbjct 5903 TTTCTGACAACGACTTGAGTAACCTCGTGAAGCTTTTGGAAATCGTAAGTTCCCTCATTC 5844 Query 71680 AT-TACAAACACGTTCA-AG-GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCA 71736 || | || | | ||| || |||| || |||| ||||| || || |||| | Sbjct 5843 ATGTCCACAAATGTTGGGAGAGCAATGGAAGCCAAGTTACAGCAAGCGACTTCATCTGGG 5784 Query 71737 TCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGT 71796 | | |||| | |||||| ||||| | ||| | ||||| || | || | | Sbjct 5783 GCAGAGTATTCGACAATTTCTGTGCACAAATTGGAGCTGCGAATGGTGCCGAGGTTCTTT 5724 Query 71797 TGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATC 71856 || || ||||| ||||| || |||||||| ||||| || || ||| | || || ||| | Sbjct 5723 TGGTTGCTCTTCTTGTTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGTCTCAGTT 5664 Query 71857 TGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGT-ATCTCTT 71915 |||| || | ||| | | ||| | | | || || || | |||| | |||| Sbjct 5663 TGAGCCTCGAGAATGGAGTACCAAAGCTTTTGGGCTTTGATGGT---CTTGCGACCTCTA 5607 Query 71916 TTCTCTTTCGTATTG-TGT-ATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAAT 71973 || ||| || | | ||| | ||| |||||||| || | ||| | || Sbjct 5606 CCTTCCTTCTCATAACTCTCATAGAGAGCTTCAAACTCGTCGCCATATACATCAGCCAAC 5547 Query 71974 CCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTT--ACTCGTTTCA 72031 |||||||||||||| || ||||| | || ||| || | | || ||| || || |||| Sbjct 5546 CCAGGACATTCATTGGGGCACATTAGTGTCCAATCCGCGT--TCTTTTCAACACGCTTCA 5489 Query 72032 TAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTT 72090 | |||||||| |||||||| | || ||| || ||||| | || | || || || Sbjct 5488 TGAAGAGATCCGGAATCCACA-AGGCATAGAAAAGATCACGGGCGCGGACTTCTTCCTTG 5430 Query 72091 CCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTAT 72150 || |||||| || || |||||| | | || ||| | ||||| || || | || Sbjct 5429 CCGTGGTTCTTTCGGAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAG 5370 Query 72151 ATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 72210 | || | | || || || |||||||| || || || | ||||||||| |||||||| Sbjct 5369 ACTGCAAATGCACCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTATTG 5310 Query 72211 TAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTT 72270 |||||| | ||| || | || || ||||| ||| ||||| |||| ||| || Sbjct 5309 AAAACTCGTAGCATCGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATGCA 5250 Query 72271 CCACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAAT 72330 ||| ||||||| || || ||| ||||| || || || || |||||||||| | Sbjct 5249 CCAGTGGCACGGATTCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATCATA 5190 Query 72331 GCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGA 72390 || ||| || | |||||||| || || || |||||||| ||| |||| | || || Sbjct 5189 GCACATGTCTTGAGGGTATCATAAATACCATCAATACTATCCTCCTTCATATCAATGAGG 5130 Query 72391 AAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 72450 || || || | || | || || || || | ||||| || ||||| Sbjct 5129 AAGCATGATGAAAGCTGTGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGT 5070 Query 72451 GTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATC-CCATTG 72509 || || |||| | |||| || ||||| |||||||| || || ||||| || | Sbjct 5069 GTGAAGTATTTGTTGGACATAAGGTTGTAGGTCTCAATGGCGCTCTCGATATCGTCACCG 5010 Query 72510 ATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTC 72554 || || || || || |||||||| | ||| ||||| || | ||| Sbjct 5009 -TGAATACCAACGGCAACACGCATGATCATTTGCTGTGGACGTTC 4966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671108948400560